HHsearch alignment for GI: 254780325 and conserved domain: cd04671
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.92 E-value=4.6e-24 Score=159.14 Aligned_cols=114 Identities=27% Similarity=0.415 Sum_probs=89.0
Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf 99999993598699999178988898382257310178748899998888762652024420255665205788606999
Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP 91 (141)
Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (141)
T Consensus 2 vV~avi~~~~g~vLLv~r~~~~~-~g~W~lPGG~vE~GEt~eeaa~REv~EETGl~v~~~~l~~v~~-----~~~~~~~~ 75 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEAKRSC-RGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEE-----QGGSWFRF 75 (123)
T ss_pred EEEEEEEECCCEEEEEEECCCCC-CCEEECCEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEE-----CCCEEEEE
T ss_conf 89999998899899999658999-9959798018049989999999999997498889777999992-----69809999
Q ss_pred EEEEEEECCEECC-----CHHHEEEECCHHHHCCCCCCCCCHHHHHHH
Q ss_conf 9999975483768-----823315702778832488973698999999
Q gi|254780325|r 92 FFVCHCFEGIPQS-----CEGQQLQWVALDDLQNYSMLPADLSLISFL 134 (141)
Q Consensus 92 ~~~~~~~~~~~~~-----~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l 134 (141)
T Consensus 76 ~f~~~~~~G~l~~~~~~~~E~~ea~Wf~~deLP~-pl~--~~~~~~~~ 120 (123)
T cd04671 76 VFTGNITGGDLKTEKEADSESLQARWYSNKDLPL-PLR--AHDILSLI 120 (123)
T ss_pred EEEEEEECCEECCCCCCCCCEEEEEEECHHHCCC-CCC--CCHHHHHH
T ss_conf 9999992765116899998779989988899868-764--04345463