HHsearch alignment for GI: 254780325 and conserved domain: cd04688
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.90 E-value=1.2e-22 Score=150.88 Aligned_cols=110 Identities=27% Similarity=0.434 Sum_probs=87.4
Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEE--ECCCCCCEEEE
Q ss_conf 9999993598699999178988898382257310178748899998888762652024420255665--20578860699
Q gi|254780325|r 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFI--SHPYEKFHLLM 90 (141)
Q Consensus 13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~--~~~~~~~~~~~ 90 (141)
T Consensus 3 rv~aii~~~~~vLl~~~~~----~~~w~lPGG~ve~gEt~~eA~~RE~~EEtGl~v~~~~l~~v~e~~f~~~~~~~h~i~ 78 (126)
T cd04688 3 RAAAIIIHNGKLLVQKNPD----ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIE 78 (126)
T ss_pred EEEEEEEECCEEEEEEECC----CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEEEECCCCCCEEEE
T ss_conf 9999999899999999779----998999853436998999999888888759678824699999768872997547999
Q ss_pred EEEEEEEECCEECCC---------HHHEEEECCHHHHCCCCCCCC
Q ss_conf 999999754837688---------233157027788324889736
Q gi|254780325|r 91 PFFVCHCFEGIPQSC---------EGQQLQWVALDDLQNYSMLPA 126 (141)
Q Consensus 91 ~~~~~~~~~~~~~~~---------E~~~~~Wi~~~el~~~~~~~~ 126 (141)
T Consensus 79 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~Wv~ldeL~~l~l~P~ 123 (126)
T cd04688 79 FYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYPE 123 (126)
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCC
T ss_conf 999999978855778764327798799999847999276887970