RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780325|ref|YP_003064738.1| mutator MutT protein
[Candidatus Liberibacter asiaticus str. psy62]
         (141 letters)



>gnl|CDD|181607 PRK08999, PRK08999, hypothetical protein; Provisional.
          Length = 312

 Score =  139 bits (353), Expect = 3e-34
 Identities = 52/129 (40%), Positives = 71/129 (55%), Gaps = 2/129 (1%)

Query: 7   KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66
            K + V A  + +  G++LL+ RP+ K  G  WEFPGGK+E GET E+AL REL EEL I
Sbjct: 2   MKRIHVAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGI 61

Query: 67  VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPA 126
            V   +  PL  + H Y    + +       ++G P   EGQ L WVA D+L  Y   PA
Sbjct: 62  EVT--AARPLITVRHDYPDKRVRLDVRRVTAWQGEPHGREGQPLAWVAPDELAVYPFPPA 119

Query: 127 DLSLISFLR 135
           +  ++  LR
Sbjct: 120 NQPIVRALR 128


>gnl|CDD|182721 PRK10776, PRK10776, nucleoside triphosphate pyrophosphohydrolase;
           Provisional.
          Length = 129

 Score =  100 bits (251), Expect = 1e-22
 Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 2/130 (1%)

Query: 7   KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66
            K L +    +  P  ++ ++ R  D      WEFPGGKIE GETPE+AL REL EE+ I
Sbjct: 1   MKKLQIAVGIIRNPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGI 60

Query: 67  VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPA 126
            V+  +L     + + +   H+ + F++   +EG P   EGQ  +WV+   L      PA
Sbjct: 61  TVQHATL--FEKLEYEFPDRHITLWFWLVESWEGEPWGKEGQPGRWVSQVALNADEFPPA 118

Query: 127 DLSLISFLRK 136
           +  +I+ L+ 
Sbjct: 119 NEPIIAKLKA 128


>gnl|CDD|182536 PRK10546, PRK10546, pyrimidine (deoxy)nucleoside triphosphate
           pyrophosphohydrolase; Provisional.
          Length = 135

 Score = 84.8 bits (210), Expect = 7e-18
 Identities = 49/128 (38%), Positives = 65/128 (50%), Gaps = 11/128 (8%)

Query: 8   KILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIV 67
           K++ VVA A+ E  GK+LL+ RP        WEF GGK+E GE+  +AL REL EEL I 
Sbjct: 2   KMIDVVA-AIIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIE 60

Query: 68  VKPFSLVPLTFISHPYE----KFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSM 123
                 V     SH  E    + H L  + V   F G  Q+ E Q L W   ++   Y +
Sbjct: 61  ATVGEYVA----SHQREVSGRRIH-LHAWHVPD-FHGELQAHEHQALVWCTPEEALRYPL 114

Query: 124 LPADLSLI 131
            PAD+ L+
Sbjct: 115 APADIPLL 122


>gnl|CDD|129674 TIGR00586, mutt, mutator mutT protein.  All proteins in this family
           for which functions are known are involved in repairing
           oxidative damage to dGTP (they are 8-oxo-dGTPases). This
           family is based on the phylogenomic analysis of JA Eisen
           (1999, Ph.D. Thesis, Stanford University).
          Length = 128

 Score = 73.8 bits (181), Expect = 1e-14
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 2/129 (1%)

Query: 7   KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66
           KK+  +    +    G+++++ R       +  EFPGGK E GETPE+A+ REL EE+ I
Sbjct: 1   KKLQQIAVGIIRNENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGI 60

Query: 67  VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPA 126
                    L      Y +   L  + +     G P      +  WV +  L +     A
Sbjct: 61  PQHFSEFEKL--EYEFYPRHITLWFWLLERWEGGPPGKEGQPEEWWVLVGLLADDFFPAA 118

Query: 127 DLSLISFLR 135
           +  +I  LR
Sbjct: 119 NPVIIKLLR 127


>gnl|CDD|131752 TIGR02705, nudix_YtkD, nucleoside triphosphatase YtkD.  The
          functional assignment to the proteins of this family is
          contentious. Reference challenges the findings of
          reference, both in interpretation and in enzyme assay
          results. This protein belongs to the nudix family and
          shares some sequence identity with E. coli MutT but
          appears not to be functionally interchangeable with it.
          Length = 156

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 15/59 (25%)

Query: 21 GGKVLLSCRPKDKSHGEFW----------EFPGGKIEDGETPEEALTRELFEELAIVVK 69
             VL+  R KD+     W          EFPGGK+E GET +EA  RE+ EE   +VK
Sbjct: 24 PNHVLVIPRYKDQ-----WLLTEHKRRGLEFPGGKVEPGETSKEAAIREVMEETGAIVK 77


>gnl|CDD|179094 PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.
          Length = 156

 Score = 49.4 bits (119), Expect = 3e-07
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEE 63
          V   +    G+V    R   + H   W+FP G I+ GETPE+A+ REL+EE
Sbjct: 11 VGIILLNRQGQVFWGRR-IGQGHS--WQFPQGGIDPGETPEQAMYRELYEE 58


>gnl|CDD|185369 PRK15472, PRK15472, nucleoside triphosphatase NudI; Provisional.
          Length = 141

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 15/125 (12%)

Query: 12  VVACAVFEPGGKVLLSCRPKDKSHGEF---WEFPGGKIEDGETPEEALTRELFEELAIVV 68
            + C + +  G  LL     D+  G F   W   GG +E GE  EEAL RE+ EEL   +
Sbjct: 5   TIVCPLIQNDGAYLLCKMADDR--GVFPGQWALSGGGVEPGERIEEALRREIREELGEQL 62

Query: 69  KPFSLVPLTFISHPYEKFH-------LLMPFFVCHCFEGIPQSC---EGQQLQWVALDDL 118
               + P TF      K +       + M + +  C           E Q   WV  +DL
Sbjct: 63  LLTEITPWTFRDDIRTKTYADGRKEEIYMIYLIFDCVSANRDVKINEEFQDYAWVKPEDL 122

Query: 119 QNYSM 123
            +Y +
Sbjct: 123 VHYDL 127


>gnl|CDD|183303 PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional.
          Length = 185

 Score = 39.0 bits (92), Expect = 5e-04
 Identities = 15/23 (65%), Positives = 16/23 (69%)

Query: 41  FPGGKIEDGETPEEALTRELFEE 63
           FP G I+ GETP EA  REL EE
Sbjct: 78  FPKGLIDPGETPLEAANRELKEE 100


>gnl|CDD|180046 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide
           adenylyltransferase/ADP-ribose pyrophosphatase;
           Provisional.
          Length = 340

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 22  GKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEE 63
           G VLL  R  +   G  W  PGG +E  ET  +A  REL EE
Sbjct: 214 GHVLLVRRRAEPGKG-LWALPGGFLEQDETLLDACLRELREE 254


>gnl|CDD|179643 PRK03759, PRK03759, isopentenyl-diphosphate delta-isomerase;
           Provisional.
          Length = 184

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 29/122 (23%)

Query: 15  CAVFEPGGKVLLSCRPKDKSHGEFWEFPG-------GKIEDGETPEEALTRELFEELAIV 67
           C +F+  G++L++ R   K       +PG       G  + GE+ E+A+ R   EEL + 
Sbjct: 39  CYLFDADGRLLVTRRALSKKT-----WPGVWTNSCCGHPQPGESLEDAVIRRCREELGVE 93

Query: 68  VKPFSLVPLTFISHPYEKFHLLMP-----FFVCHCFEGI------PQSCEGQQLQWVALD 116
           +    LV   F      ++    P       VC  F         P   E    QWV   
Sbjct: 94  ITDLELVLPDF------RYRATDPNGIVENEVCPVFAARVTSALQPNPDEVMDYQWVDPA 147

Query: 117 DL 118
           DL
Sbjct: 148 DL 149


>gnl|CDD|181858 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase;
          Provisional.
          Length = 148

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 6/59 (10%)

Query: 11 LVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVK 69
          LVV   ++ P   VL+  R  D    +FW+   G +E+GETP +   RE+ EE  I V 
Sbjct: 11 LVV---IYTPDLGVLMLQRADDP---DFWQSVTGSLEEGETPAQTAIREVKEETGIDVL 63


>gnl|CDD|182682 PRK10729, nudF, ADP-ribose pyrophosphatase NudF; Provisional.
          Length = 202

 Score = 33.6 bits (77), Expect = 0.017
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 40  EFPGGKIEDGETPEEALTRELFEELAIVVK 69
           E   G IE+GE+ E+   RE  EE  ++V 
Sbjct: 85  EMVAGMIEEGESVEDVARREAIEEAGLIVG 114


>gnl|CDD|178944 PRK00241, nudC, NADH pyrophosphatase; Reviewed.
          Length = 256

 Score = 31.0 bits (71), Expect = 0.11
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 44  GKIEDGETPEEALTRELFEELAIVVK 69
           G +E GET E+ + RE+ EE  I VK
Sbjct: 163 GFVEVGETLEQCVAREVMEESGIKVK 188


>gnl|CDD|177959 PLN02325, PLN02325, nudix hydrolase.
          Length = 144

 Score = 31.0 bits (70), Expect = 0.13
 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 13 VACAVFE-PGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEE 63
          VA  VF   G  VLL  R        F   PGG +E GE+ EE   RE+ EE
Sbjct: 10 VAVVVFLLKGNSVLLGRRRSSIGDSTF-ALPGGHLEFGESFEECAAREVKEE 60


>gnl|CDD|129162 TIGR00052, TIGR00052, nudix-type nucleoside diphosphatase,
           YffH/AdpP family. 
          Length = 185

 Score = 28.6 bits (64), Expect = 0.61
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 40  EFPGGKIEDGETPEEALTRELFEELAIVVK 69
           E   G +E GE+PE+   RE  EE    VK
Sbjct: 80  ELSAGMVEKGESPEDVARREAIEEAGYQVK 109


>gnl|CDD|185332 PRK15434, PRK15434, GDP-mannose mannosyl hydrolase NudD;
          Provisional.
          Length = 159

 Score = 28.6 bits (64), Expect = 0.62
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 22 GKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66
          G+ LL  R    + G +W  PGG+++  ET E A  R    EL +
Sbjct: 29 GEFLLGKRTNRPAQG-YWFVPGGRVQKDETLEAAFERLTMAELGL 72


>gnl|CDD|181809 PRK09376, rho, transcription termination factor Rho; Provisional.
          Length = 416

 Score = 27.8 bits (63), Expect = 1.1
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 15/46 (32%)

Query: 45  KIE--DGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHL 88
           K+E  +GE PE+A  R LFE         +L PL    +P E+  L
Sbjct: 115 KVETVNGEDPEKARNRPLFE---------NLTPL----YPNERLRL 147


>gnl|CDD|185291 PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional.
          Length = 180

 Score = 27.5 bits (61), Expect = 1.3
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 22  GKVLLSCRP--KDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72
           GK+L+  R   KD   G      GG ++ GE   E+  RE  EEL I   PF+
Sbjct: 49  GKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFA 101


>gnl|CDD|179648 PRK03776, PRK03776, phosphoglycerol transferase I; Provisional.
          Length = 762

 Score = 27.0 bits (60), Expect = 1.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 61  FEELAIVVKPFSLVPLTFISHPYEKF 86
           FEEL+   + FSL  LT  +H  + F
Sbjct: 316 FEELSRSGQRFSLFTLTVDTHHPDGF 341


>gnl|CDD|183935 PRK13271, treA, trehalase; Provisional.
          Length = 569

 Score = 26.8 bits (59), Expect = 2.1
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 9/24 (37%)

Query: 107 GQQ---------LQWVALDDLQNY 121
           GQQ         LQWVA + LQNY
Sbjct: 448 GQQWDAPNGWAPLQWVATEGLQNY 471


>gnl|CDD|177550 PHA03173, PHA03173, UL37 tegument protein; Provisional.
          Length = 1028

 Score = 26.5 bits (59), Expect = 2.5
 Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)

Query: 45  KIEDGETPEEALTRELFEELAIVVKPFSLVPLT 77
             + G T    L  E F E    + P +LVP  
Sbjct: 244 TRDRGATAPSRLL-EQFAEDVREIDPAALVPPG 275


>gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase.
          Length = 475

 Score = 26.3 bits (58), Expect = 2.7
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 19  EPGGKVLLS--CRPKDKSHGEFWEF 41
           +PGGKVL+S  CR       EF E+
Sbjct: 360 KPGGKVLISDYCRSPGTPSPEFAEY 384


>gnl|CDD|130156 TIGR01084, mutY, A/G-specific adenine glycosylase.  This equivalog
           model identifies mutY members of the pfam00730
           superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro
           rich loop followed by a conserved aspartate). The major
           members of the superfamily are nth and mutY.
          Length = 275

 Score = 25.8 bits (57), Expect = 4.0
 Identities = 11/41 (26%), Positives = 16/41 (39%)

Query: 9   ILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDG 49
                   +    G+VLL  RP+    G  + FP  + ED 
Sbjct: 226 ERTTYFLVLQNYDGEVLLEQRPEKGLWGGLYCFPQFEDEDS 266


>gnl|CDD|163013 TIGR02776, NHEJ_ligase_prk, DNA ligase D.  Members of this protein
           family are DNA ligases involved in the repair of DNA
           double-stranded breaks by non-homologous end joining
           (NHEJ). The system of the bacterial Ku protein
           (TIGR02772) plus this DNA ligase is seen in about 20 %
           of bacterial genomes to date and at least one archaeon
           (Archeoglobus fulgidus). This model describes a central
           and a C-terminal domain. These two domains may be
           permuted, as in genus Mycobacterium, or divided into
           tandem ORFs, and therefore not be identified by this
           model. An additional N-terminal 3'-phosphoesterase (PE)
           domain present in some but not all examples of this
           ligase is not included in the seed alignment for this
           model; This alignment models only the central
           ATP-dependent ligase domain and the C-terminal
           polymerase domain. Most examples of genes for this
           ligase are adjacent to the gene for Ku.
          Length = 552

 Score = 25.4 bits (56), Expect = 4.9
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 12/57 (21%)

Query: 56  LTRELFEELAIVVKPFS----------LVPLTFISHPYEKFHLLMPFFVCHCFEGIP 102
           L ++L +EL +V   F           +VPL   +  +++  L       +     P
Sbjct: 415 LMKQLLDELGLV--SFVKTSGGKGLHVVVPLRPNTFTWDETKLFAKAIAEYLARQFP 469


>gnl|CDD|183022 PRK11183, PRK11183, D-lactate dehydrogenase; Provisional.
          Length = 564

 Score = 25.2 bits (56), Expect = 5.6
 Identities = 10/13 (76%), Positives = 11/13 (84%)

Query: 46  IEDGETPEEALTR 58
           I+ GETPEE LTR
Sbjct: 186 IDLGETPEEILTR 198


>gnl|CDD|178232 PLN02625, PLN02625, uroporphyrin-III C-methyltransferase.
          Length = 263

 Score = 25.4 bits (56), Expect = 6.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 42  PGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFI 79
           P   +E G TPE+ +     E++A  V    LV  T I
Sbjct: 206 PAAAVERGTTPEQRVVFGTLEDIAEDVAAAGLVSPTVI 243


>gnl|CDD|129044 smart00808, FABD, F-actin binding domain (FABD).  FABD is the
          F-actin binding domain of Bcr-Abl and its cellular
          counterpart c-Abl. The Bcr-Abl tyrosine kinase causes
          different forms of leukemia in humans. Depending on its
          position within the cell, Bcr-Abl differentially
          affects cellular growth. The FABD forms a compact
          left-handed four-helix bundle in solution.
          Length = 126

 Score = 25.2 bits (55), Expect = 7.0
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 47 EDGETPEEALTRELFEELAIVV-KPFSLVPLTFISHPY--EKFHLL 89
               P +A+++++  EL  ++    S       SH    +K H L
Sbjct: 15 PAERIPSDAISKDMILELTELLESALSSSSEQPASHSQWLDKGHQL 60


>gnl|CDD|151547 pfam11103, DUF2887, Protein of unknown function (DUF2887).  This
           bacterial family of proteins has no known function.
          Length = 200

 Score = 24.9 bits (55), Expect = 7.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 106 EGQQLQWVALDDLQNYSMLPADLSLI 131
             Q++Q + LD+L    +L   L+L+
Sbjct: 117 NSQRVQRIYLDELGEAELLSLGLALM 142


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.325    0.142    0.452 

Gapped
Lambda     K      H
   0.267   0.0723    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,449,036
Number of extensions: 148428
Number of successful extensions: 378
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 29
Length of query: 141
Length of database: 5,994,473
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,179,401
Effective search space: 238225857
Effective search space used: 238225857
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.8 bits)