RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780325|ref|YP_003064738.1| mutator MutT protein
[Candidatus Liberibacter asiaticus str. psy62]
(141 letters)
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR
{Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A*
1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Length = 129
Score = 125 bits (315), Expect = 4e-30
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Query: 8 KILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIV 67
K L + + ++ ++ R D EFPGGKIE GETPE+A+ REL EE+ I
Sbjct: 2 KKLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGIT 61
Query: 68 VKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPAD 127
+ FSL + + + H+ + F++ +EG P EGQ +W++L L PA+
Sbjct: 62 PQHFSL--FEKLEYEFPDRHITLWFWLVERWEGEPWGKEGQPGEWMSLVGLNADDFPPAN 119
Query: 128 LSLISFLRK 136
+I+ L++
Sbjct: 120 EPVIAKLKR 128
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica
serovar typhimurium STR. unknown function; HET: PO4;
1.75A {Salmonella enterica subsp} PDB: 3n77_A
Length = 165
Score = 115 bits (288), Expect = 4e-27
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 11/132 (8%)
Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGE-FWEFPGGKIEDGETPEEALTRELFEELAIVVKP 70
+ C + + G LL ++ W GG +E GE EEAL RE+ EEL +
Sbjct: 29 TIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLIL 88
Query: 71 FSLVPLTFI---------SHPYEKFHLLMPFFVCHCFEG-IPQSCEGQQLQWVALDDLQN 120
+ P TF E+ +++ F C I + E Q WV ++L
Sbjct: 89 SDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDICINDEFQDYAWVKPEELAL 148
Query: 121 YSMLPADLSLIS 132
Y + A ++
Sbjct: 149 YDLNVATRHTLA 160
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious
diseases, hydrolase, structural genomics; 2.10A
{Bartonella henselae str}
Length = 158
Score = 107 bits (268), Expect = 7e-25
Identities = 65/131 (49%), Positives = 87/131 (66%)
Query: 7 KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66
+L+VVACA+ + +VLL+ RP+ KS WEFPGGK+E GETPE +L REL EEL +
Sbjct: 26 SSLLIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGV 85
Query: 67 VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPA 126
V+ +L PLTF SH YE FHLLMP + C ++G+ Q EGQ L+W+ ++DL Y M A
Sbjct: 86 HVQADNLFPLTFASHGYETFHLLMPLYFCSHYKGVAQGREGQNLKWIFINDLDKYPMPEA 145
Query: 127 DLSLISFLRKH 137
D L+ L+
Sbjct: 146 DKPLVQVLKNF 156
>1iry_A HMTH1; nudix motif(G37-L59), hydrolase; NMR {Homo sapiens} SCOP:
d.113.1.1
Length = 156
Score = 102 bits (256), Expect = 2e-23
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 1/116 (0%)
Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71
+ + +VLL + + G W GGK+++GET E+ REL EE + V
Sbjct: 6 LYTLVLVLQPQRVLLGMKKRGFGAG-RWNGFGGKVQEGETIEDGARRELQEESGLTVDAL 64
Query: 72 SLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPAD 127
V E + + F +G P + + W LD + M P D
Sbjct: 65 HKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDD 120
>2b06_A MUTT/nudix family protein; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP:
d.113.1.1
Length = 155
Score = 101 bits (252), Expect = 7e-23
Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Query: 7 KKILLVVACAVFEP-GGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELA 65
+ +L C + + +V++ R + + + FPGG +E+ E E++ RE++EE
Sbjct: 5 QLTILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETG 64
Query: 66 IVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLP 125
+ ++ LV + + ++ + F G QS E ++ WV D + N ++
Sbjct: 65 LTIQNPQLVGIKNWPLDTGGRY-IVICYKATEFSGTLQSSEEGEVSWVQKDQIPNLNLAY 123
Query: 126 ADLSLISFLRK 136
L L+ +
Sbjct: 124 DMLPLMEMMEA 134
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2,
protein structure initiative; 2.00A {Bacteroides
fragilis nctc 9343}
Length = 140
Score = 99.9 bits (248), Expect = 2e-22
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 5 NLKKILLVVACAVFEPGGKVLLSCRPKDK--SHGEFWEFPGGKIEDGETPEEALTRELFE 62
+LK I V AV G K L R + K +EFPGGK+E+GE+ +EAL RE+ E
Sbjct: 2 SLKSI--EVVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIME 59
Query: 63 ELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYS 122
E+ L + H Y F + M F+CH E QW++ ++
Sbjct: 60 EMDY--VIEVGEKLLTVHHTYPDFEITMHAFLCHPVGQRYVLKEHIAAQWLSTREMAILD 117
Query: 123 MLPADLSLISFLRKH 137
AD ++ + +
Sbjct: 118 WAEADKPIVRKISEQ 132
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.50A {Bacillus
halodurans}
Length = 188
Score = 99.6 bits (248), Expect = 2e-22
Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 8/128 (6%)
Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEEL---AIVVK 69
V + +VLL +P+ +W PGGK+E GE+ E + RE +EE +
Sbjct: 6 VTNCIVVDHDQVLLLQKPRRG----WWVAPGGKMEAGESILETVKREYWEETGITVKNPE 61
Query: 70 PFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQ-SCEGQQLQWVALDDLQNYSMLPADL 128
+ + ++ F EG +L+W D++ M D
Sbjct: 62 LKGIFSMVIFDEGKIVSEWMLFTFKATEHEGEMLKQSPEGKLEWKKKDEVLELPMAAGDK 121
Query: 129 SLISFLRK 136
+ +
Sbjct: 122 WIFKHVLH 129
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 2.55A
{Bacillus thuringiensis str}
Length = 171
Score = 94.7 bits (235), Expect = 6e-21
Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 12/134 (8%)
Query: 6 LKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELA 65
++ I+ V + KVLL + K W PGG++E+GET EEA+ RE+ EE
Sbjct: 18 IENIMQVRVTGILIEDEKVLLVKQ---KVANRDWSLPGGRVENGETLEEAMIREMREETG 74
Query: 66 IVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIP-------QSCEGQQLQWVALDDL 118
+ VK L L P LL F+ EG +Q V +++L
Sbjct: 75 LEVKIKKL--LYVCDKPDASPSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINEL 132
Query: 119 QNYSMLPADLSLIS 132
Y ++LIS
Sbjct: 133 SYYGFSETFINLIS 146
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II),
NYSGXRC, 11180K, structural genomics; 2.00A
{Lactobacillus brevis atcc 367}
Length = 161
Score = 91.0 bits (225), Expect = 8e-20
Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 3/138 (2%)
Query: 7 KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66
+ + LV V +P + +L + FPGG +E GE A RE+FEE +
Sbjct: 7 QPVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGL 66
Query: 67 VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSM--- 123
+ + + L + F G ++ QL W+ + L +
Sbjct: 67 RLSGVTFCGTCEWFDDDRQHRKLGLLYRASNFTGTLKASAEGQLSWLPITALTRENSAAS 126
Query: 124 LPADLSLISFLRKHALHM 141
LP L + + +
Sbjct: 127 LPEFLQVFTGTASTLVSD 144
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix,
hydrolase, GFG, GFG-1, FGF2AS, structural genomics,
structural genomics consortium; HET: FLC; 1.70A {Homo
sapiens}
Length = 199
Score = 87.9 bits (217), Expect = 7e-19
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 8/132 (6%)
Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72
VA AVF+ + +L + ++K W+FPGG E E + RE+FEE I + S
Sbjct: 29 VAGAVFDESTRKILVVQDRNKLKN-MWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRS 87
Query: 73 LVPLTFISHPYEKFHLLMPFFVCHC----FEGIPQSCEGQQLQWVALDDLQNYSMLPADL 128
++ + F + +C F E + +W+ L+DL
Sbjct: 88 VLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAK---TENTT 144
Query: 129 SLISFLRKHALH 140
+ S + + L+
Sbjct: 145 PITSRVARLLLY 156
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer,
putative nudix hydrolase, structural genomics, unknown
function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1
PDB: 1jrk_A 1k26_A
Length = 156
Score = 87.2 bits (215), Expect = 1e-18
Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 16/139 (11%)
Query: 11 LVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKP 70
++V V GKVLL + + +PGG +E ETP EA+ RE EE IVV+P
Sbjct: 1 MIVTSGVLVENGKVLLVKHKRLG----VYIYPGGHVEHNETPIEAVKREFEEETGIVVEP 56
Query: 71 FSLVPLTFISHPYEKFHLLMPFF------------VCHCFEGIPQSCEGQQLQWVALDDL 118
+ E+ L+ + + + +W+ + ++
Sbjct: 57 IGFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREI 116
Query: 119 QNYSMLPADLSLISFLRKH 137
P ++S
Sbjct: 117 DRIETFPNVRKVVSLALST 135
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase;
1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A*
3ffu_A*
Length = 153
Score = 83.8 bits (206), Expect = 1e-17
Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 2/131 (1%)
Query: 7 KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66
K + V GK+L+ RP++ S WEFPGGKIE+GETPEEAL REL EEL I
Sbjct: 18 KGHWIPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGI 77
Query: 67 VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPA 126
+ +H Y +L+ F+ ++G P++ L+W+ ++L++ ++ A
Sbjct: 78 EAEV--GELKLACTHSYGDVGILILFYEILYWKGEPRAKHHMMLEWIHPEELKHRNIPEA 135
Query: 127 DLSLISFLRKH 137
+ ++ + K
Sbjct: 136 NRKILHKIYKA 146
>2pqv_A MUTT/nudix family protein; structural genomics, PSI-2, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.63A {Streptococcus pneumoniae TIGR4}
Length = 154
Score = 84.1 bits (207), Expect = 1e-17
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 13/140 (9%)
Query: 8 KILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIV 67
+ V A A+ K+L+ + K K + GG I+ E+ E+A+ RE+ EEL +
Sbjct: 16 TVFGVRATALIVQNHKLLV-TKDKGK-----YYTIGGAIQVNESTEDAVVREVKEELGVK 69
Query: 68 VKPFSLVPLTFISHPY--EKFHLLMPFFVCHCFEGIPQSC----EGQQLQWVALDDLQNY 121
+ L + +H + ++ E P + + Q +W+ LD LQN
Sbjct: 70 AQAGQLAFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNI 129
Query: 122 SMLPADL-SLISFLRKHALH 140
++P L + + H
Sbjct: 130 QLVPVFLKTALPDWEGQLRH 149
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2,
protein structure initiative; 1.70A {Chromobacterium
violaceum}
Length = 163
Score = 82.7 bits (204), Expect = 3e-17
Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 12/132 (9%)
Query: 6 LKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELA 65
L L A A+ E VL++ + + PGGK GE +AL RE+ EE
Sbjct: 11 LPSDLARRATAIIEMPDGVLVTASRGGR-----YNLPGGKANRGELRSQALIREIREETG 65
Query: 66 IVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLP 125
+ + ++ L P+ ++C E +++ V+ D + +
Sbjct: 66 LRINS--MLYLFDHITPFNAHK----VYLCIAQGQPKPQNEIERIALVSSPDT-DMDLFV 118
Query: 126 ADLSLISFLRKH 137
+++ +
Sbjct: 119 EGRAILRRYARL 130
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure
initiative II(PSI II), nysgxrc; 1.76A {Bacillus
thuringiensis str}
Length = 153
Score = 82.1 bits (202), Expect = 5e-17
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 12/127 (9%)
Query: 9 ILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVV 68
I AV + +L P + +W P G IE GETPEEA+ RE++EE + V
Sbjct: 19 IFXPSVAAVIKNEQGEILFQYPGGE----YWSLPAGAIELGETPEEAVVREVWEETGLKV 74
Query: 69 KP------FSLVPLTFISHPYEKFHLLMPFFVCHCFEG--IPQSCEGQQLQWVALDDLQN 120
+ F + ++ ++ F C G E +LQ+ +L +
Sbjct: 75 QVKKQKGVFGGKEYRYTYSNGDEVEYIVVVFECEVTSGELRSIDGESLKLQYFSLSEKPP 134
Query: 121 YSMLPAD 127
++ D
Sbjct: 135 LALPYPD 141
>3dku_A Putative phosphohydrolase; nudix hydrolase, ORF153, YMFB,
nucleoside triphosphatase; 2.69A {Escherichia coli apec
O1}
Length = 153
Score = 81.7 bits (201), Expect = 5e-17
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 6/122 (4%)
Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71
V V GK L+ + W P G +E ET EA REL+EE I +P
Sbjct: 6 VTVACVVHAEGKFLVVEETIN--GKALWNQPAGHLEADETLVEAAARELWEETGISAQPQ 63
Query: 72 SLVPLTFISHPYEKFHLLMPFFVCHCFEG---IPQSCEGQQLQWVALDDLQNYSMLPADL 128
+ + P +K L F + P + +WV+ +++ S L + L
Sbjct: 64 HFIRMHQWIAP-DKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPL 122
Query: 129 SL 130
Sbjct: 123 VA 124
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18;
NUDT18, NXR1, nucleotide hydrolase, hydrolase,
structural genomics; 2.10A {Homo sapiens}
Length = 156
Score = 80.9 bits (199), Expect = 9e-17
Identities = 34/136 (25%), Positives = 50/136 (36%), Gaps = 11/136 (8%)
Query: 7 KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66
K + VV +VLL K + G W P G++E GET EAL RE+ EE +
Sbjct: 17 KNVCYVVLAVFLSEQDEVLLIQEAKRECRG-SWYLPAGRMEPGETIVEALQREVKEEAGL 75
Query: 67 VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQ-----SCEGQQLQWVALDDLQNY 121
+P +L +S + F+ GI + E Q W L
Sbjct: 76 HCEPETL-----LSVEERGPSWVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTP 130
Query: 122 SMLPADLSLISFLRKH 137
L L+ ++
Sbjct: 131 LRAHDILHLVELAAQY 146
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate,
structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex
aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Length = 134
Score = 80.5 bits (198), Expect = 1e-16
Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 8/129 (6%)
Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71
A V G+VLL P + W FP G IE GE PEE RE++EE + +
Sbjct: 5 FSAGGVLFKDGEVLLIKTPSNV-----WSFPKGNIEPGEKPEETAVREVWEETGVKGEIL 59
Query: 72 SLVPLTFISHPYE--KFHLLMPFFVCHCFEGIPQ-SCEGQQLQWVALDDLQNYSMLPADL 128
+ + + + + +++ EG P+ S E + ++ + + + D
Sbjct: 60 DYIGEIHYWYTLKGERIFKTVKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDK 119
Query: 129 SLISFLRKH 137
+ K
Sbjct: 120 EIFEKALKL 128
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI; 2.27A {Streptococcus suis}
Length = 206
Score = 80.4 bits (198), Expect = 1e-16
Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 10/121 (8%)
Query: 9 ILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVV 68
L A+F+ K+LL W PGG + ++ ++ + +E+ EE + V
Sbjct: 69 PKLDTRAAIFQ-EDKILLVQENDGL-----WSLPGGWCDVDQSVKDNVVKEVKEEAGLDV 122
Query: 69 KPFSLVPL---TFISHPYEKFHLLMPFFVCHCFEGIPQ-SCEGQQLQWVALDDLQNYSML 124
+ +V + + + F +C G Q + E + +LDDL +
Sbjct: 123 EAQRVVAILDKHKNNPAKSAHRVTKVFILCRLLGGEFQPNSETVASGFFSLDDLPPLYLG 182
Query: 125 P 125
Sbjct: 183 K 183
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2,
protein structure initiative; 1.70A {Methanosarcina
mazei}
Length = 153
Score = 79.9 bits (196), Expect = 2e-16
Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 4/124 (3%)
Query: 7 KKILLVVACAVFEPGGKVLLSCRPKDK-SHGEFWEFPGGKIEDGETPEEALTRELFEELA 65
K ++ V + G+ LL R ++ ++ W+ PGGK+ E+ +E + RE++EE
Sbjct: 5 KPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETG 64
Query: 66 IVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEG-IPQSCEGQQLQWVALDDLQNYSML 124
I + P + ++ + ++ F + S E + WV+L+ + L
Sbjct: 65 ITMVPGDI--AGQVNFELTEKKVIAIVFDGGYVVADVKLSYEHIEYSWVSLEKILGMETL 122
Query: 125 PADL 128
PA
Sbjct: 123 PAYF 126
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrolase; two
individual domains; HET: APR NAD; 2.60A {Synechocystis
SP}
Length = 341
Score = 79.0 bits (194), Expect = 3e-16
Identities = 29/127 (22%), Positives = 44/127 (34%), Gaps = 11/127 (8%)
Query: 11 LVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKP 70
+ AV G VL+ R G PGG I+ ET E + REL EE + V
Sbjct: 203 FITTDAVVVQAGHVLMVRRQAKPGLG-LIALPGGFIKQNETLVEGMLRELKEETRLKVPL 261
Query: 71 FSLVPLTFISHPY------EKFHLLMPFFVCHCFEG----IPQSCEGQQLQWVALDDLQN 120
L SH + + + + G + + Q+ W++L DL
Sbjct: 262 PVLRGSIVDSHVFDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYA 321
Query: 121 YSMLPAD 127
+
Sbjct: 322 QEEQIYE 328
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, hydrolase,
riken structural genomics/proteomics initiative, RSGI;
1.70A {Thermus thermophilus HB8} SCOP: d.113.1.1 PDB:
1vc8_A 1vc9_A*
Length = 126
Score = 78.1 bits (192), Expect = 7e-16
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 6/125 (4%)
Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72
VF +VLL W FP G E GE+ EEA RE++EE + +
Sbjct: 5 AGGVVFNAKREVLLLRDRMGF-----WVFPKGHPEPGESLEEAAVREVWEETGVRAEVLL 59
Query: 73 LVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLIS 132
+ + + +F+ W + ++ + P DL L+
Sbjct: 60 PLY-PTRYVNPKGVEREVHWFLMRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLE 118
Query: 133 FLRKH 137
+
Sbjct: 119 VALER 123
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, unknown function; 1.55A {Nitrosomonas europaea}
SCOP: d.113.1.1
Length = 153
Score = 77.6 bits (190), Expect = 1e-15
Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 4/129 (3%)
Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71
V AV E K LL + P G +E GE+ +A +RE+ EE P
Sbjct: 9 VTVAAVIEQDDKYLL-VEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPE 67
Query: 72 SLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSC---EGQQLQWVALDDLQNYSMLPADL 128
L + + L F P + W ++D+++ +
Sbjct: 68 VLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRTP 127
Query: 129 SLISFLRKH 137
++ + +
Sbjct: 128 LVMQCIEDY 136
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol
polyphosphate metabolism, structural genomics,
structural genomics consortium; HET: IHP; 1.25A {Homo
sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A
Length = 194
Score = 77.4 bits (190), Expect = 1e-15
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 11 LVVACAVF--EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVV 68
AC F E +VLL + H + W PGG +E E P A RE+ EE +
Sbjct: 41 KRAACLCFRSESEEEVLLVSSSR---HPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKG 97
Query: 69 KPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIP-QSCEGQQLQWVALDDL 118
LV F + + + V E G++ +W ++D
Sbjct: 98 TLGRLVG-IFENQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDA 147
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR
{Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Length = 171
Score = 76.2 bits (187), Expect = 2e-15
Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 3/111 (2%)
Query: 11 LVVACAVFEPGGKVLLSCRPKDKSH-GEFWEFP-GGKIEDGETPEEALTRELFEELAIVV 68
VV + G++ + R KS + GG ++ GET EEA RE EEL + +
Sbjct: 35 RVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEI 94
Query: 69 KPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGI-PQSCEGQQLQWVALDDL 118
S PL S M + + +W+ + L
Sbjct: 95 DALSWRPLASFSPFQTTLSSFMCVYELRSDATPIFNPNDISGGEWLTPEHL 145
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA
turnover, structural genomic consortium, SGC; HET: IMP;
1.72A {Homo sapiens} PDB: 3cou_A
Length = 217
Score = 74.5 bits (182), Expect = 8e-15
Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 20/122 (16%)
Query: 22 GKVLLSCRPKDKSHGEFWEFPGGKIEDGETP-EEALTRELFEELAIVVKPFSLVPLTF-I 79
+L+ R + FPGG ++ + E+ L REL EEL F + +
Sbjct: 65 YAILMQMRFDGR-----LGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRS 119
Query: 80 SHPYEKFHLLMPFFVCHCFEGIPQSCEG------------QQLQWVALDDLQNYSM-LPA 126
SH ++ F+ + E L V L L++ LP
Sbjct: 120 SHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLRDGVGGLPT 179
Query: 127 DL 128
L
Sbjct: 180 FL 181
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.20A {Listeria innocua}
Length = 187
Score = 74.0 bits (181), Expect = 1e-14
Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 17/130 (13%)
Query: 11 LVVACAVF-------EPGGKVLLSCRPKDK------SHGEFWEFPGGKIEDGETPEEALT 57
+ +P +LL R G W PGG +++ E+ E+A
Sbjct: 28 YTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAE 87
Query: 58 RELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHC----FEGIPQSCEGQQLQWV 113
REL EE ++ P + + ++ F E + ++
Sbjct: 88 RELEEETSLTDIPLIPFGVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLF 147
Query: 114 ALDDLQNYSM 123
+ + +
Sbjct: 148 PMTEALELPL 157
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP:
a.4.5.68 d.113.1.6
Length = 273
Score = 72.9 bits (178), Expect = 2e-14
Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 9/128 (7%)
Query: 8 KILLVVACAVF-----EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFE 62
K L V + KVLL R W PGG + E+ E+++ RE E
Sbjct: 37 KPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRN-SWALPGGFVNRNESTEDSVLRETKE 95
Query: 63 ELAIVVKPFSLVPLTFISHPY--EKFHLLMPFFVCHCFEGIPQ-SCEGQQLQWVALDDLQ 119
E +V+ ++ L S P + ++ ++ E + +++ W L+
Sbjct: 96 ETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHG 155
Query: 120 NYSMLPAD 127
+ L +
Sbjct: 156 QHITLSHE 163
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair,
alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: d.113.1.3
Length = 155
Score = 72.7 bits (177), Expect = 2e-14
Identities = 20/132 (15%), Positives = 40/132 (30%)
Query: 7 KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66
+ V G ++LL RP WEFP E E + + + A
Sbjct: 19 ESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAG 78
Query: 67 VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPA 126
+ L L + H + L + P + +W+ ++ ++ A
Sbjct: 79 PLPATHLRHLGEVVHTFSHIKLTYQVYGLALEGQTPVTTVPPGARWLTQEEFHTAAVSTA 138
Query: 127 DLSLISFLRKHA 138
+ + +
Sbjct: 139 MKKVFRVYQGQS 150
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural
genomics, NPPSFA; 1.80A {Aquifex aeolicus VF5}
Length = 139
Score = 72.8 bits (178), Expect = 3e-14
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 7/123 (5%)
Query: 5 NLKKILLVVACAVF----EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTREL 60
N+K LL + E ++L R K PGG +E GE EEA RE+
Sbjct: 4 NVKTPLLATDVIIRLWDGENFKGIVLIER---KYPPVGLALPGGFVEVGERVEEAAAREM 60
Query: 61 FEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQN 120
EE + V+ L+ + + H++ ++ + ++++ L+++
Sbjct: 61 REETGLEVRLHKLMGVYSDPERDPRAHVVSVVWIGDAQGEPKAGSDAKKVKVYRLEEIPL 120
Query: 121 YSM 123
+
Sbjct: 121 DKL 123
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
domains, hydrolase; HET: AMP; 2.30A {Francisella
tularensis} PDB: 2r5w_B
Length = 352
Score = 71.4 bits (174), Expect = 7e-14
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 12/119 (10%)
Query: 11 LVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKP 70
V A+ +L+ R W PGG +E ET +A+ RELFEE I +
Sbjct: 208 FVTVDALVIVNDHILMVQRKAHPGKD-LWALPGGFLECDETIAQAIIRELFEETNINLTH 266
Query: 71 FSLVPLTFISHPYEK----------FHLLMPFFVCHCFEGIPQSC-EGQQLQWVALDDL 118
L ++ H+ + F + + + ++W++L
Sbjct: 267 EQLAIAKRCEKVFDYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSN 325
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix
Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP:
d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Length = 160
Score = 70.3 bits (171), Expect = 2e-13
Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 11/129 (8%)
Query: 10 LLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVK 69
L+ + V G+ LL R + G +W PGG+++ ET E A R EL + +
Sbjct: 18 LVSLDFIVENSRGEFLLGKRTNRPAQG-YWFVPGGRVQKDETLEAAFERLTMAELGLRLP 76
Query: 70 PFSLVPLTFISHPYE--------KFHLLMPFFVCHCFEG--IPQSCEGQQLQWVALDDLQ 119
+ H Y+ H ++ F E + + +W+ D L
Sbjct: 77 ITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALL 136
Query: 120 NYSMLPADL 128
+ A+
Sbjct: 137 ASDNVHANS 145
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay,
cytoplasm, hydrolase, manganese, metal-binding, mRNA
processing; NMR {Saccharomyces cerevisiae}
Length = 146
Score = 69.9 bits (170), Expect = 2e-13
Identities = 29/143 (20%), Positives = 49/143 (34%), Gaps = 16/143 (11%)
Query: 7 KKILLVVACAVF-EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELA 65
KK + V A+F E K+LL + W FP GKI E + RE+ EE+
Sbjct: 1 KKSIPVRGAAIFNENLSKILLVQGTESD----SWSFPRGKISKDENDIDCCIREVKEEIG 56
Query: 66 IVVKPF-SLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEG-QQLQWVALDDLQN--- 120
+ + + + + + + V F PQ +++W +
Sbjct: 57 FDLTDYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMY 116
Query: 121 ------YSMLPADLSLISFLRKH 137
Y + L +LR
Sbjct: 117 KSNIKYYLINSMMRPLSMWLRHQ 139
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP
pyrophosphohydrolase MUTT dihydroneopterin triphosphate
pyrophosphohydrolase folate biosynthesis; 1.80A
{Escherichia coli} PDB: 2o5w_A
Length = 150
Score = 69.5 bits (169), Expect = 2e-13
Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 17/145 (11%)
Query: 1 MIDVNLKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTREL 60
M D K+ + ++ + +VL+ R D FW+ G +E+GET +A RE+
Sbjct: 1 MKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPD---FWQSVTGSVEEGETAPQAAMREV 57
Query: 61 FEELAIVVKPFSLVP--------------LTFISHPYEKFHLLMPFFVCHCFEGIPQSCE 106
EE+ I V L L P + F + E E
Sbjct: 58 KEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTESWFCLALPHERQIVFTE 117
Query: 107 GQQLQWVALDDLQNYSMLPADLSLI 131
+W+ + ++ I
Sbjct: 118 HLAYKWLDAPAAAALTKSWSNRQAI 142
>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A
hydrolase, alpha-beta; NMR {Homo sapiens} SCOP:
d.113.1.1 PDB: 1xsb_A 1xsc_A*
Length = 153
Score = 69.5 bits (169), Expect = 2e-13
Identities = 22/130 (16%), Positives = 37/130 (28%), Gaps = 8/130 (6%)
Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72
+ V + LL H W P G +E GE E R EE I +
Sbjct: 20 LIPKVDNNAIEFLLLQASDGIHH---WTPPKGHVEPGEDDLETALRATQEEAGIEAGQLT 76
Query: 73 LVPLTFISHPYEKFHLLMPFFVCHC-----FEGIPQSCEGQQLQWVALDDLQNYSMLPAD 127
++ Y + I S E Q +W+ L++ +
Sbjct: 77 IIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEM 136
Query: 128 LSLISFLRKH 137
+ + +
Sbjct: 137 KAALQEGHQF 146
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis,
structural genomics, PSI, protein structure initiative;
HET: 1PE; 1.90A {Enterococcus faecalis V583} SCOP:
d.113.1.1
Length = 148
Score = 69.2 bits (168), Expect = 3e-13
Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72
V +P ++ + + + PGG+IE ET EEA+ RE+ EEL I V+
Sbjct: 21 AYIIVSKPENNTMVLVQAPNG----AYFLPGGEIEGTETKEEAIHREVLEELGISVEIGC 76
Query: 73 LVPLT----FISHPYEKFHLLMPFFVCHCFEGIPQSCE-GQQLQWVALDDLQNYSMLPAD 127
+ + +H ++ F+V + + + + E L WVA ++ +
Sbjct: 77 YLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLLKRGSH 136
Query: 128 LSLI-SFLRKHA 138
+ +L +
Sbjct: 137 RWAVEKWLAAAS 148
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium
perfringens atcc 13124}
Length = 197
Score = 69.1 bits (168), Expect = 3e-13
Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 19/136 (13%)
Query: 11 LVVACAVFEP-GGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVK 69
L + K L+ S W + GG ++ + + +EL EE +
Sbjct: 46 LTSSAFAVNKERNKFLMIHHNIYNS----WAWTGGHSDNEKDQLKVAIKELKEETGVKNP 101
Query: 70 PFSLVPLTFISHPYEKFHLLMPFFV--------------CHCFEGIPQSCEGQQLQWVAL 115
L + H+ +V + + E + W+
Sbjct: 102 TPLLDKAFALDVLTVNGHIKRGKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPF 161
Query: 116 DDLQNYSMLPADLSLI 131
+++ Y P + +
Sbjct: 162 NEISKYCSEPHMIPIY 177
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A
{Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7
PDB: 2qkm_B*
Length = 271
Score = 68.5 bits (167), Expect = 6e-13
Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 6/118 (5%)
Query: 7 KKILLVVACAVF-EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELA 65
K + V + + +L K S W FP GKI+ E+ + RE++EE
Sbjct: 98 KTRIPVRGAIMLDMSMQQCVLVKGWKASSG---WGFPKGKIDKDESDVDCAIREVYEETG 154
Query: 66 IVVKPFSLVPLTFISHPYEKFHLLMPFFVCHC-FEGIPQSCEG-QQLQWVALDDLQNY 121
+ L ++ + +++W L DL +
Sbjct: 155 FDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTF 212
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich,
structural genomics, BSGC structure funded by NIH; 1.39A
{Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A
1su2_A* 1sz3_A*
Length = 159
Score = 68.3 bits (166), Expect = 6e-13
Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 8/124 (6%)
Query: 5 NLKKILLVVACAVFEPGGKVLLSCR---PKDKSHGEFWEFPGGKIEDGETPEEALTRELF 61
++ L + G +LL P W P G +EDGE P++A RE
Sbjct: 8 HVPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREAC 67
Query: 62 EELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIP----QSCEGQQLQWVALDD 117
EE + V+P + P + +L ++ G + E + +V+ +D
Sbjct: 68 EETGLRVRPVKFLGAYLGRFP-DGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSRED 126
Query: 118 LQNY 121
Sbjct: 127 FAQL 130
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix
hydrolase, PSI-2, protein structure initiative; 1.89A
{Thermotoga maritima}
Length = 211
Score = 68.1 bits (166), Expect = 7e-13
Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 10/120 (8%)
Query: 12 VVACAVFEPGGKVLLSCR----PKDKSHGEFWEFPGGKIED------GETPEEALTRELF 61
V+ V G +VL++ R + + H + GG + + E + L RE+
Sbjct: 69 VIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVN 128
Query: 62 EELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNY 121
EE+ + ++ + L S L F+ + + + + + L++L+ +
Sbjct: 129 EEVDVSLRELEFLGLINSSTTEVSRVHLGALFLGRGKFFSVKEKDLFEWELIKLEELEKF 188
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl,
isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2
PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A*
1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A
2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Length = 190
Score = 67.7 bits (165), Expect = 8e-13
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 7/117 (5%)
Query: 11 LVVACAVFEPGGKVLLSCRPKDKSH-GEFWEFP-GGKIEDGETPEEALTRELFEELAIVV 68
L + +F G++L++ R K W G + GE+ E+A+ R EL + +
Sbjct: 33 LAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEI 92
Query: 69 KPFSLVPLTFISHPYEK----FHLLMPFFVCHCFEGI-PQSCEGQQLQWVALDDLQN 120
P + F + + + P F + E QW L D+ +
Sbjct: 93 TPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLH 149
>3cou_A Nudix motif 16, nucleoside diphosphate-linked moiety X motif 16;
hydrolase, NUDT16, mRNA decapping, mRNA turnover,
structural genomics consortium; 1.80A {Homo sapiens}
Length = 217
Score = 66.9 bits (163), Expect = 2e-12
Identities = 26/132 (19%), Positives = 41/132 (31%), Gaps = 20/132 (15%)
Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETP-EEALTRELFEELAIVVKPF 71
+ +L+ R + FPGG ++ + E+ L REL EEL F
Sbjct: 56 MLFGRIPLRYAILMQMRFDGR-----LGFPGGFVDTQDRSLEDGLNRELREELGEAAAAF 110
Query: 72 SLVPLTF-ISHPYEKFHLLMPFFVCH------------CFEGIPQSCEGQQLQWVALDDL 118
+ + SH ++ F+ E L V L L
Sbjct: 111 RVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTL 170
Query: 119 QN-YSMLPADLS 129
++ LP L
Sbjct: 171 RDGVGGLPTFLE 182
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium
cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP:
d.113.1.1 PDB: 1kt9_A*
Length = 138
Score = 66.4 bits (161), Expect = 2e-12
Identities = 25/130 (19%), Positives = 43/130 (33%), Gaps = 7/130 (5%)
Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71
+V + LL H W P G ++ GE +A RE EE I +
Sbjct: 8 LVIYRKLAGKIEFLLLQASYPPHH---WTPPKGHVDPGEDEWQAAIRETKEEANITKEQL 64
Query: 72 SLVPLTFISHPYEKF--HLLMPFFVCHCFEG--IPQSCEGQQLQWVALDDLQNYSMLPAD 127
++ + YE + +++ + S E Q +W L+D +
Sbjct: 65 TIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIADYAEM 124
Query: 128 LSLISFLRKH 137
SL+
Sbjct: 125 GSLLRKFSAF 134
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein
structure initiative; 2.50A {Bacteroides
thetaiotaomicron vpi-5482} SCOP: a.4.5.68 d.113.1.6
Length = 226
Score = 66.0 bits (160), Expect = 3e-12
Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 8/140 (5%)
Query: 8 KILLVVACAVF---EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEEL 64
L + C +F E +LL R + + G W GG ++ E+ ++A R L E
Sbjct: 11 TFYLGIDCIIFGFNEGEISLLLLKRNFEPAMG-EWSLMGGFVQKDESVDDAAKRVLAELT 69
Query: 65 AIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEG--IPQSCEGQQLQWVALDDLQNYS 122
+ V ++ + + + WV +++L
Sbjct: 70 GLENVYMEQVGAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPALI 129
Query: 123 MLPADL--SLISFLRKHALH 140
++ +++ A
Sbjct: 130 FDHPEMVDKAREMMKQKASV 149
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed
4-stranded beta sheet, 2-stranded antiparallel sheet;
NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Length = 165
Score = 64.8 bits (157), Expect = 6e-12
Identities = 23/129 (17%), Positives = 37/129 (28%), Gaps = 26/129 (20%)
Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVK--- 69
V + K+ + R W+ P G I++GE P A REL EE +
Sbjct: 17 VGICLMNNDKKIFAASRLDIPD---AWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVI 73
Query: 70 -----------PFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIP---------QSCEGQQ 109
P + I + +F+ + E +
Sbjct: 74 AEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGE 133
Query: 110 LQWVALDDL 118
WV + L
Sbjct: 134 WSWVTPEQL 142
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II(PSI
II), NYSGXRC, 11181H, structural genomics; 2.15A
{Bifidobacterium adolescentis ATCC15703}
Length = 364
Score = 62.9 bits (152), Expect = 2e-11
Identities = 24/156 (15%), Positives = 43/156 (27%), Gaps = 30/156 (19%)
Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71
+ +V + RPK W +P GK+E ET A RE+ EE VK
Sbjct: 28 SKSAQEQLDSIEVCIVHRPKYDD----WSWPKGKLEQNETHRHAAVREIGEETGSPVKLG 83
Query: 72 SLVPLTFISHPYEKFHLLMP-----------FFVCHCFEG--------------IPQSCE 106
+ E +++ E
Sbjct: 84 PYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGE 143
Query: 107 GQQLQWVALDDLQNYSMLPADLSLIS-FLRKHALHM 141
+ WV++ + + D ++ F+ +
Sbjct: 144 INDIVWVSVREARKILSHSTDKDTLAVFVDRVQEGA 179
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH
domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A*
3gz8_A*
Length = 240
Score = 62.4 bits (151), Expect = 4e-11
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 8/138 (5%)
Query: 7 KKILLVVACAVF---EPGGKVLLSCRPKDKSHGEFWEFPGGKIED--GETPEEALTRELF 61
K LL V +F + KVLL R G W PGG I++ E+ E+ + R+L
Sbjct: 19 KAQLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGL-WGLPGGFIDETCDESLEQTVLRKLA 77
Query: 62 EELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHC--FEGIPQSCEGQQLQWVALDDLQ 119
E+ A+V + + + + + Q ++W L D+
Sbjct: 78 EKTAVVPPYIEQLCTVGNNSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVL 137
Query: 120 NYSMLPADLSLISFLRKH 137
+ L LI R+
Sbjct: 138 QMPLAFDHLQLIEQARER 155
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold; 2.10A
{Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A*
2a8p_A* 2a8r_A* 2a8s_A*
Length = 212
Score = 62.0 bits (150), Expect = 5e-11
Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 9/113 (7%)
Query: 13 VACAVFEPGGKVLLSCRPKD------KSHGEFWEFPGGKIEDGETP-EEALTRELFEELA 65
+ P L P FPGG ++ + EE L REL EEL
Sbjct: 36 CHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPGGFVDTRDISLEEGLKRELEEELG 95
Query: 66 IVVKPFSLV-PLTFISHPYEKFHLLM-PFFVCHCFEGIPQSCEGQQLQWVALD 116
+ + S E + F++ + E + +
Sbjct: 96 PALATVEVTEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHG 148
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, structural genomics; 2.02A {Clostridium
perfringens atcc 13124}
Length = 159
Score = 61.5 bits (148), Expect = 6e-11
Identities = 30/141 (21%), Positives = 44/141 (31%), Gaps = 25/141 (17%)
Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVK-- 69
KVLL K K GG IE E PEEA RE EE + V
Sbjct: 7 FTVSVFIVCKDKVLLHLHKKAK----KMLPLGGHIEVNELPEEACIREAKEEAGLNVTLY 62
Query: 70 ------------PFSLVPLTFISHPYEKFHLLMPFFVCHCF-------EGIPQSCEGQQL 110
L H + + E P+ E + L
Sbjct: 63 NPIDINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKIL 122
Query: 111 QWVALDDLQNYSMLPADLSLI 131
+W + +DL+N + ++ ++
Sbjct: 123 KWYSKEDLKNAHNIQENILVM 143
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; HET: MSE; 2.20A {Escherichia coli
K12} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Length = 269
Score = 58.1 bits (140), Expect = 7e-10
Identities = 31/131 (23%), Positives = 46/131 (35%), Gaps = 10/131 (7%)
Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72
V +L + + G +E GET E+A+ RE+ EE I VK
Sbjct: 141 PCIIVAIRRDDSILLAQHTRHRN-GVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLR 199
Query: 73 LVPLTFISHPYEKFHLLMPFFVCHCFEG--IPQSCEGQQLQWVALDDLQNYSMLPADLSL 130
S P+ LM F+ G + E + W DDL LP ++
Sbjct: 200 ----YVTSQPWPFPQSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPL---LPPPGTV 252
Query: 131 ISFLRKHALHM 141
L + + M
Sbjct: 253 ARRLIEDTVAM 263
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc;
NMR {Escherichia coli} PDB: 2kdw_A
Length = 164
Score = 57.4 bits (138), Expect = 1e-09
Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 24/126 (19%)
Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72
V + G+V+ R + W+FP G I GE+ E+A+ RELFEE+ + K
Sbjct: 11 VGIVICNRQGQVMW-ARRFGQ---HSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVR 66
Query: 73 L-------------VPLTFISHPYEKFHLLMPFFVCHCFEGIP-------QSCEGQQLQW 112
+ L +F+ G + E +W
Sbjct: 67 ILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRW 126
Query: 113 VALDDL 118
V+
Sbjct: 127 VSYWYP 132
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans,
hydrolase; 1.70A {Deinococcus radiodurans} SCOP:
d.113.1.1 PDB: 1nqy_A
Length = 194
Score = 55.5 bits (133), Expect = 4e-09
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 12 VVACAVFEPGGKVLLSCRPKD-KSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKP 70
V+ E +VLL+ R + +H FPGG ++ GETP +A RE EE+A+ P
Sbjct: 38 VLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVAL--DP 95
Query: 71 FSLVPLTFISHPYEKFHLLMPFFVC----HCFEGIPQSCEGQQLQWVALDDLQN 120
++ L + + + + + + + E Q+ L +L+
Sbjct: 96 AAVTLLGELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRA 149
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA
glycosylase, transition state analog, DNA repair; HET:
NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A*
1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Length = 369
Score = 55.5 bits (133), Expect = 4e-09
Identities = 21/126 (16%), Positives = 45/126 (35%), Gaps = 6/126 (4%)
Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72
+ + G+VL+ R WEFP + + + E L + + E+ + V+
Sbjct: 243 AVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADGKE-KLEQMVGEQYGLQVE--L 299
Query: 73 LVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLIS 132
P+ H + + F G P + + D+L+ Y+ + +
Sbjct: 300 TEPIVSFEHAFSHLVWQLTVFPGRLVHGGP---VEEPYRLAPEDELKAYAFPVSHQRVWR 356
Query: 133 FLRKHA 138
++ A
Sbjct: 357 EYKEWA 362
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase;
HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB:
1qvj_A*
Length = 292
Score = 52.3 bits (125), Expect = 4e-08
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 19 EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTF 78
+ + + R W PGG ++ GE L RE EE ++ S
Sbjct: 136 KHILQFVAIKRK----DCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREI 191
Query: 79 ISHPYEKFH 87
++ F
Sbjct: 192 EEKLHKLFS 200
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine
diphospho-ribose, RV1700; HET: APR; 2.00A {Mycobacterium
tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A*
1mqw_A* 1mr2_A*
Length = 207
Score = 51.5 bits (123), Expect = 6e-08
Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 10/113 (8%)
Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIED-GETPEEALTRELFEELAIVVKPF 71
VA + G + + + + WE P G ++ GE P REL EE+ + +
Sbjct: 46 VAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTW 105
Query: 72 SLVPLTFISHPY--EKFHLLMPFFVCHCFEGIPQSC----EGQQLQWVALDDL 118
++ + + E + + E + W + +
Sbjct: 106 QVLVDLDTAPGFSDESVRV---YLATGLREVGRPEAHHEEADMTMGWYPIAEA 155
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural
genomics, PSI, protein structure initiative; HET: MSE;
2.00A {Escherichia coli K12} SCOP: d.113.1.2
Length = 180
Score = 51.7 bits (123), Expect = 6e-08
Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 8/134 (5%)
Query: 11 LVVACAVFEPGGKVLLSCRPKDKSHGEFWE--FPGGKIEDGETPEEALTRELFEELAIVV 68
V + GK+L+ R + K GG ++ E E+ RE EEL I
Sbjct: 38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAG 97
Query: 69 KPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGI-PQSCEGQQLQWVALDDLQNY--SMLP 125
P + + F C Q E ++ W+ +++ P
Sbjct: 98 VP--FAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTP 155
Query: 126 ADLSLIS-FLRKHA 138
L ++ +++++A
Sbjct: 156 DSLKALALWMKRNA 169
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT
family, riken structural genomics/proteomics initiative,
RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP:
d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A
1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Length = 170
Score = 50.1 bits (119), Expect = 2e-07
Identities = 21/105 (20%), Positives = 36/105 (34%)
Query: 14 ACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSL 73
+ G++L + + E P G IE GE P EA REL E+ + L
Sbjct: 37 VAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLTYL 96
Query: 74 VPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDL 118
++ + E P E ++ W+ ++
Sbjct: 97 FSYFVSPGFTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEA 141
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase;
2.00A {Deinococcus radiodurans}
Length = 145
Score = 49.8 bits (118), Expect = 2e-07
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 5/109 (4%)
Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72
V G+ +L + + E G +E GE A REL EE+
Sbjct: 8 VFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGG--AASE 65
Query: 73 LVPLTFISHPYEKFHLLMPFFVCHCF---EGIPQSCEGQQLQWVALDDL 118
VPL ++ + + E + + L ++
Sbjct: 66 WVPLPGFYPQPSISGVVFYPLLALGVTLGAAQLEDTETIERVVLPLAEV 114
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3
family, structural genomics, protein structure
initiative; HET: MSE; 1.80A {Rhodospirillum rubrum atcc
11170}
Length = 300
Score = 48.1 bits (114), Expect = 6e-07
Identities = 16/144 (11%), Positives = 34/144 (23%), Gaps = 16/144 (11%)
Query: 12 VVACAVFEPGGKVLLSCRPKDKSH--GEFWEFPGGKIEDGETPEEALTRELFEELAIVVK 69
+ + + R DKS G+ G + + L +E EE +
Sbjct: 123 LNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEA 182
Query: 70 PFSLVPLTFISHPYEKFHLLMPFFVCHCFEGI--------PQSCEGQQLQWVALDDL--- 118
+ + ++ E +
Sbjct: 183 LARQAIPVGAITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEA 242
Query: 119 --QNYSMLP-ADLSLISFLRKHAL 139
+ +L++I F +H L
Sbjct: 243 VRTTEAFKFNVNLTVIDFAIRHGL 266
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix
fold, hydrolase; 1.90A {Escherichia coli} SCOP:
d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Length = 209
Score = 47.7 bits (113), Expect = 8e-07
Identities = 23/121 (19%), Positives = 36/121 (29%), Gaps = 18/121 (14%)
Query: 12 VVACAVFEPGGKVLL--SCRP---KDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66
V +V+L R E G IE+GE+ E+ RE EE +
Sbjct: 60 AVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGL 119
Query: 67 VVKPFSLVPLTFISHPY--EKFHLLMPFFVCHCFEGIPQSCEGQ-------QLQWVALDD 117
+VK V S E+ + V G ++ V+ +
Sbjct: 120 IVKRTKPVLSFLASPGGTSERSSI----MVGEVDATTASGIHGLADENEDIRVHVVSREQ 175
Query: 118 L 118
Sbjct: 176 A 176
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose
pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo
sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A
Length = 212
Score = 45.9 bits (108), Expect = 3e-06
Identities = 25/121 (20%), Positives = 38/121 (31%), Gaps = 18/121 (14%)
Query: 12 VVACAVFEPGG---KVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVV 68
V V + ++L + + G EFP G I+DGETPE A REL EE
Sbjct: 64 VAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKG 123
Query: 69 KPFSLVPLTFISHPY--EKFHLLMPFFVCHCFEGIPQSCEGQQ---------LQWVALDD 117
P + H ++ + + + +D
Sbjct: 124 DIAECSPAVCMDPGLSNCTIH----IVTVTINGDDAENARPKPKPGDGEFVEVISLPKND 179
Query: 118 L 118
L
Sbjct: 180 L 180
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protein
structure initiative, midwest center for structural
genomics; 2.00A {Nitrosomonas europaea atcc 19718}
Length = 189
Score = 45.7 bits (107), Expect = 4e-06
Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 6/108 (5%)
Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71
V+ + E KVLL R G W P G +E+ ET + RE EE V+
Sbjct: 41 VIVGCIPEWENKVLLCKRAIAPYRG-KWTLPAGFMENNETLVQGAARETLEEANARVEIR 99
Query: 72 SLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSC-EGQQLQWVALDDL 118
L + + + F + E +++ ++
Sbjct: 100 EL----YAVYSLPHISQVYMLFRAKLLDLDFFPGIESLEVRLFGEQEI 143
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD,
hydrolase, structural genomics, NPPSFA; HET: RBY; 1.66A
{Thermus thermophilus HB8} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Length = 182
Score = 45.5 bits (107), Expect = 5e-06
Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 2/111 (1%)
Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71
G LL + + + E P GK+++GETPE A REL EE+ +
Sbjct: 43 ASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETL 102
Query: 72 SLVPLTFISHPY--EKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQN 120
+P + FH + + E + + L ++
Sbjct: 103 IPLPSFHPQPSFTAVVFHPFLALKARVVTPPTLEEGELLESLELPLTEVYA 153
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A
{Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Length = 198
Score = 45.5 bits (107), Expect = 5e-06
Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 3/111 (2%)
Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71
V ++L + F G I+ GE+ EA REL EE+
Sbjct: 50 EAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDL 109
Query: 72 SLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQ--QLQWVALDDLQN 120
+ + ++ P + + + E + L + +
Sbjct: 110 TFLKKLSMA-PSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMD 159
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein;
1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Length = 235
Score = 44.8 bits (105), Expect = 6e-06
Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 20/130 (15%)
Query: 11 LVVACAVFEPGGKVLLSCRPKDKSH--GEFWEFPGGKIEDGETP---------EEALTRE 59
+ +F K+LL R K G F A R
Sbjct: 60 RAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRR 119
Query: 60 LFEELAIVVKPFSLVPLTFISHPYEKF---HLLMPFFVCHCFEG------IPQSCEGQQL 110
L EL I ++ + +++ + K + + + P E +
Sbjct: 120 LKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRMNVTLNPDPNEIKSY 179
Query: 111 QWVALDDLQN 120
+V+ ++L+
Sbjct: 180 CYVSKEELKE 189
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis,
cholesterol biosynthesis, isoprene biosynthesis, lipid
synthesis, peroxisome; HET: GOL; 1.81A {Homo sapiens}
Length = 246
Score = 39.7 bits (92), Expect = 2e-04
Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 20/130 (15%)
Query: 11 LVVACAVFEPGGKVLLSCRPKDKSH-GEFWEFP-GGKIEDGETP---------EEALTRE 59
+ +F ++L+ R K ++ A R
Sbjct: 71 RAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRR 130
Query: 60 LFEEL---AIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCF----EGIPQSC--EGQQL 110
L EL + P +V +T H + + +C+ E + +
Sbjct: 131 LQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSI 190
Query: 111 QWVALDDLQN 120
+++ ++L
Sbjct: 191 LYLSQEELWE 200
>1viu_A ADP-ribose pyrophosphatase; structural genomics, hydrolase; 2.40A
{Escherichia coli} SCOP: d.113.1.1
Length = 203
Score = 33.5 bits (76), Expect = 0.019
Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 13/118 (11%)
Query: 12 VVACAVFEPGGKVLLS--CRP---KDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66
V+L R + + + D + PE + +E EE
Sbjct: 50 ATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGY 109
Query: 67 VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSC------EGQQLQWVALDDL 118
V + ++S L+ FF+ + + E ++ +
Sbjct: 110 EVGEVRKLFELYMSP--GGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQA 165
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation,
RNA-binding, structural genomics consortium, SGC, RNA
degradation; 1.70A {Homo sapiens}
Length = 214
Score = 32.9 bits (75), Expect = 0.031
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 41 FPGGKIEDG-ETPEEALTRELFEELAIV 67
FPGG ++ + E+ L R L L +
Sbjct: 58 FPGGFVDRRFWSLEDGLNRVLGLGLGCL 85
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices,
helix-hairpin-helix motif, iron-sulfur cluste hydrolase;
2.30A {Homo sapiens}
Length = 287
Score = 30.1 bits (67), Expect = 0.19
Identities = 7/37 (18%), Positives = 8/37 (21%)
Query: 6 LKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFP 42
L V CA + L FP
Sbjct: 245 LSGSPDVEECAPNTGQCHLCLPPSEPWDQTLGVVNFP 281
>3iyt_A APAF-1, apoptotic protease-activating factor 1; apoptosome,
procaspase-9 CARD, apoptosis; HET: ATP; 9.50A {Homo
sapiens}
Length = 1263
Score = 28.2 bits (62), Expect = 0.71
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 7 KKILLVV-------ACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRE 59
+ LL++ F+ ++LL+ R K + +E E+ L E
Sbjct: 242 PRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGL--E 299
Query: 60 LFEELA 65
+
Sbjct: 300 ILSLFV 305
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 1d9k_B* 2aq3_A
3byy_A 3byt_A 3bzd_A 1u3h_B ...
Length = 238
Score = 26.1 bits (56), Expect = 3.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 17 VFEPGGKVLLSCRPKDKSHGEFW 39
V GGKV LSC+ + + +W
Sbjct: 10 VAVTGGKVTLSCQQTNNHNNMYW 32
>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET:
SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A*
Length = 155
Score = 25.6 bits (56), Expect = 4.4
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 35 HGEFWEFPGGKIEDGETPEEALTRE 59
F GK++DGE E L E
Sbjct: 58 ALWLHNFSAGKVQDGEKYIEELFLE 82
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 25.4 bits (55), Expect = 4.7
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 22/94 (23%)
Query: 21 GGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVP----- 75
GGK + C P+ S GE E L+R ++ +V P +P
Sbjct: 114 GGKGGIICDPRTMSFGEL---------------ERLSRGYVRAISQIVGPTKDIPAPDVY 158
Query: 76 --LTFISHPYEKFHLLMPFFVCHCFEGIPQSCEG 107
++ +++ L F G P G
Sbjct: 159 TNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGG 192
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB:
1bwm_A
Length = 238
Score = 25.2 bits (54), Expect = 5.0
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 17 VFEPGGKVLLSCRPKDKSHGEFW--EFPGGKIE 47
V GGKV LSC + + +W + G +
Sbjct: 11 VAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLR 43
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C PSI-2;
2.00A {Corynebacterium glutamicum}
Length = 516
Score = 25.1 bits (54), Expect = 5.7
Identities = 13/121 (10%), Positives = 28/121 (23%), Gaps = 3/121 (2%)
Query: 1 MIDVNLKKILLVVACAVFEPGGKVLL---SCRPKDKSHGEFWEFPGGKIEDGETPEEALT 57
+ + + + ++ + G+ + D E
Sbjct: 225 IRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEESESGDDFLAEVCRD 284
Query: 58 RELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDD 117
E A T ++ L + + G W+A+DD
Sbjct: 285 WEHATAPASDAGKRVAFIRTGVALSGRGGMLPLLKTLFSTGLGGKFGDGTSWFSWIAIDD 344
Query: 118 L 118
L
Sbjct: 345 L 345
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 2006
Score = 25.3 bits (55), Expect = 5.8
Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 110 LQWVALDDLQNYSMLPADLSLISFLRKHAL 139
++ A +DL++ ++PAD + H+L
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAG----HSL 1764
>2ial_A CD4+ T cell receptor E8 alpha chain; X-RAY crystallography, major
histocompatibility complex, T cell stimulation,
melanoma, tumor antigen; 1.92A {Homo sapiens} PDB:
2iam_C 2ian_D
Length = 202
Score = 24.8 bits (53), Expect = 6.9
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 19 EPGGKVLLSCRPKDKSHGEFW--EFPGGK 45
+ G L C D + W + P G+
Sbjct: 13 QEGANSTLRCNFSDSVNNLQWFHQNPWGQ 41
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold,
glycosyltransferase, GT55, GDP, cytoplasm, magnesium,
transferase; HET: GDP; 2.00A {Pyrococcus horikoshii}
PDB: 2zu7_A* 2zu8_A*
Length = 394
Score = 24.5 bits (53), Expect = 9.3
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 17 VFEPGGKVL-LSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIV----VKPF 71
F+ G+V ++ + E F + G E A+T +L E L ++P+
Sbjct: 214 YFKKWGRVSEITNHYLNLLVSEHTAFETTIMVTGNAGEHAMTMKLAEILPFSTGYSIEPY 273
Query: 72 SLV 74
+V
Sbjct: 274 EIV 276
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.325 0.142 0.452
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,344,922
Number of extensions: 61520
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 79
Length of query: 141
Length of database: 5,693,230
Length adjustment: 83
Effective length of query: 58
Effective length of database: 3,680,978
Effective search space: 213496724
Effective search space used: 213496724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.3 bits)