HHsearch alignment for GI: 254780326 and conserved domain: cd00123
>cd00123 DmpA_OAT DmpA/OAT superfamily; composed of L-aminopeptidase D-amidase/D-esterase (DmpA), ornithine acetyltransferase (OAT) and similar proteins. DmpA is an aminopeptidase that releases N-terminal D and L amino acids from peptide substrates. This group represents one of the rare aminopeptidases that are not metalloenzymes. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucleophilic attack of the side chain of an N-terminal serine, threonine, or cysteine. OAT catalyzes the first and fifth steps in arginine biosynthesis, coupling acetylation of glutamate with deacetylation of N-acetylornithine, which allows recycling of the acetyl group in the arginine biosynthetic pathway. The superfamily also contains an enzyme, endo-type 6-aminohexanoate-oligomer hydrolase, that have been shown to be involved in nylon degradation. Proteins in this superfamily undergo autocatalytic c
Probab=100.00 E-value=0 Score=543.65 Aligned_cols=254 Identities=29% Similarity=0.329 Sum_probs=219.4
Q ss_pred CCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCE-EEEEECCCCCCCCCHHHHHH
Q ss_conf 47479999980310188946999994899869998325778534348888872358802-99993787223414798999
Q gi|254780326|r 22 IKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIAR-ALIVNSGIANAFTGKRGRDT 100 (416)
Q Consensus 22 i~Gf~~~~~~aGiK~~~r~DL~li~~~~pa~~AgvFT~N~~~AAPV~~~k~~l~~~~~r-aivvNSGnANA~TG~~G~~~ 100 (416)
T Consensus 1 PkG~~~~~a~aGiK~~gR~Dl~li~~~~~a~~AgVFT~n~~~aa~~~~~~~---~g~~~~~vv~~~~n~~~~~a~~~~~~ 77 (286)
T cd00123 1 PRGVVVGTAPVGEADDGRDGFTVIASTAPATVSVVFTRGRFAGPLCREAVA---GGQFRHGVVVLARNEGEENAREVREA 77 (286)
T ss_pred CCCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHH---CCCCCEEEEEECCCCCCCCHHHHHHH
T ss_conf 983899888603557999888999957998899996467774187999971---88864589980474345553558999
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-CHHHHHHHCCCCCCCCCH------HHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 9999999987649873308871143102243-202222100122234583------226888876431565752246688
Q gi|254780326|r 101 VRFIAKAVSELIPCKEEEVYVASTGIIGEFL-DVALFDGVLSKMLCDATD------DAWLDSAKAMMTTDRYAKVAVRTV 173 (416)
Q Consensus 101 a~~~~~~~a~~l~~~~~~Vl~~STGVIG~~L-p~~ki~~~i~~l~~~l~~------~~~~~aA~AImTTDt~pK~~~~~~ 173 (416)
T Consensus 78 ~-~~~~~~~~~~~~~~~~v~vasTgvIG~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~aA~aImTTDT~pK~a~~~~ 156 (286)
T cd00123 78 V-ARARGLPRTGFAEEGEXLIASTYDIGRQYTPXESIRAHLRTALWPAGEGGFDRGRASAGAARAIXTTDTGPGEARRSV 156 (286)
T ss_pred H-HHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHEEEE
T ss_conf 9-999855664288711002113433355467750344443321011013454334224899988860476640221431
Q ss_pred EECCCEEEEEEEEECCHH-----------------------CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 756962899998502000-----------------------243452258899965643999999999986005554143
Q gi|254780326|r 174 DIDGIRVTINGLAKGAGM-----------------------IAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSIT 230 (416)
Q Consensus 174 ~i~g~~v~i~GiaKGsGM-----------------------I~PnMATML~fi~TDa~i~~~~L~~~L~~~v~~SFN~Is 230 (416)
T Consensus 157 ~----~~ti~giAKGsGm~~~~~~i~GiakG~gmiA~~~~~I~PnMATML~fi~TDA~i~p~~L~~l~~-~vd~SFN~IT 231 (286)
T cd00123 157 G----GATIVAIVKGNGXLEIVDRAGTVVRGQEAFAEQVPPVTPDXATLITFFATDARLDPAELDRLAR-VXDRTFNRVS 231 (286)
T ss_pred C----CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEEECCCCCHHHHHHHHH-HHHCCCCEEE
T ss_conf 3----5056532026665332222243102433223456666988666201344156589899999998-7524433488
Q ss_pred ECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 16765644228996326534677776888777799888878899999999862263
Q gi|254780326|r 231 VDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKDLALQVVCDG 286 (416)
Q Consensus 231 VDGDtSTNDtv~l~AnG~~~~~~~~i~~~~~~~~~~f~~aL~~v~~~LA~~Iv~DG 286 (416)
T Consensus 232 VDGDTSTnDt~ll~AtG~ag~--~~i~~~~~~~~~~~~~al~~v~~~LA~~iVrDa 285 (286)
T cd00123 232 IDTDTSTGDTAVAFATGLAGL--PTTPGSSRGRLEVDAGEFEEAAHTAALAAVKDA 285 (286)
T ss_pred ECCCCCCCCEEEEEECCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 548777665777750678799--867877656699999999999999999985247