HHsearch alignment for GI: 254780326 and conserved domain: pfam01960
>pfam01960 ArgJ ArgJ family. Members of the ArgJ family catalyse the first EC:2.3.1.1 and fifth steps EC:2.3.1.35 in arginine biosynthesis.
Probab=100.00 E-value=0 Score=1144.61 Aligned_cols=387 Identities=48% Similarity=0.735 Sum_probs=379.3
Q ss_pred EEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 79999980310188946999994899869998325778534348888872358802999937872234147989999999
Q gi|254780326|r 25 VRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTVRFI 104 (416)
Q Consensus 25 f~~~~~~aGiK~~~r~DL~li~~~~pa~~AgvFT~N~~~AAPV~~~k~~l~~~~~raivvNSGnANA~TG~~G~~~a~~~ 104 (416)
T Consensus 1 F~~~gv~aGiK~~~r~Dl~li~s~~~~~~AgvFT~n~~~AApV~~~~~~l~~~~~ravvvNSGnANA~TG~~G~~da~~~ 80 (387)
T pfam01960 1 FRAAGVHAGIKKSGKKDLALIVSDVPATAAGVFTTNKFKAAPVLVSREHLKGGKARAVVVNSGNANACTGEQGLEDAREM 80 (387)
T ss_pred CEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCEECCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 96423785466599997899996799649998647852406769999874359805999915863000438899999999
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEE
Q ss_conf 99998764987330887114310224320222210012223458322688887643156575224668875696289999
Q gi|254780326|r 105 AKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTING 184 (416)
Q Consensus 105 ~~~~a~~l~~~~~~Vl~~STGVIG~~Lp~~ki~~~i~~l~~~l~~~~~~~aA~AImTTDt~pK~~~~~~~i~g~~v~i~G 184 (416)
T Consensus 81 ~~~~a~~l~~~~~~Vlv~STGVIG~~lp~~~i~~~i~~~~~~l~~~~~~~aA~AImTTDt~pK~~~~~~~i~g~~v~i~G 160 (387)
T pfam01960 81 AELVAELLGIPPEEVLVASTGVIGEPLPMEKIRAGIPALVAALSADGWEDAARAIMTTDTFPKEAAREVEIGGKTVTIGG 160 (387)
T ss_pred HHHHHHHHCCCCCEEEEECCCEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEE
T ss_conf 99999984999640798215312662888999987899987548344899998774258740489999998998899999
Q ss_pred EEECCHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf 85020002434522588999656439999999999860055541431676564422899632653467777688877779
Q gi|254780326|r 185 LAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRL 264 (416)
Q Consensus 185 iaKGsGMI~PnMATML~fi~TDa~i~~~~L~~~L~~~v~~SFN~IsVDGDtSTNDtv~l~AnG~~~~~~~~i~~~~~~~~ 264 (416)
T Consensus 161 iaKGsGMI~PnMATML~fi~TDa~i~~~~Lq~~L~~av~~SFN~ItVDGDtSTNDtv~llAnG~s~~--~~i~~-~~~~~ 237 (387)
T pfam01960 161 IAKGSGMIHPNMATMLAFITTDAAISPELLQKALRRAVDRSFNRITVDGDTSTNDTVLVLANGAAGN--PPITE-GSPDY 237 (387)
T ss_pred EECCCCCCCCCHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCCEEEEEECCCCCC--CCCCC-CCHHH
T ss_conf 9645435786446456452005666999999999999986524142068778766799981465578--74777-99779
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCC
Q ss_conf 98888788999999998622630021379999824899999999987735715665555067886244532220245776
Q gi|254780326|r 265 SLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVL 344 (416)
Q Consensus 265 ~~f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~sg~~ 344 (416)
T Consensus 238 ~~f~~aL~~v~~~LA~~IvrDGEGATK~I~V~V~gA~s~~~A~~iA~sIa~S~LVKTAi~G~DpN-WGRI~~AiG~sg~~ 316 (387)
T pfam01960 238 AAFQEALTEVCQELAKQIVRDGEGATKLIEVTVTGAASEEDARKVARAIANSPLVKTAIFGEDPN-WGRILAAVGYSGVD 316 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCC-HHHHHHHCCCCCCC
T ss_conf 99999999999999998542668663489999927889999999999974486888998468988-88999870677776
Q ss_pred CCHHHEEEEECCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCHHHEECCCCCCC
Q ss_conf 582334999899998717731878899999986254877999972689812899954587546001146579
Q gi|254780326|r 345 VDRDRLSVWFGDVRIANNGEPEINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSNVQS 416 (416)
Q Consensus 345 ~d~~~i~i~ig~~~v~~~G~~~~~~~e~~~~~~~~~~~i~i~idLg~G~~~~t~~tcDLt~~YV~iNa~Yrs 416 (416)
T Consensus 317 ~d~~~i~i~~g~~~v~~~G~~-~~~~e~~~~~~m~~~ei~I~vdLg~G~~~~t~wtcDLt~~YV~INa~YrT 387 (387)
T pfam01960 317 FDPDKVDISFGGVLVVENGEP-VDFDEEAASAILKEDEITIRVDLGLGDGSATAWTCDLSYDYVKINADYRT 387 (387)
T ss_pred CCHHHEEEEECCEEEEECCCC-CCCCHHHHHHHHCCCEEEEEEEECCCCCCEEEEECCCCHHHHEECCCCCC
T ss_conf 675772999899999959946-88898999976478928999997888963899947588416067774369