Query gi|254780326|ref|YP_003064739.1| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 416
No_of_seqs 128 out of 1654
Neff 5.1
Searched_HMMs 33803
Date Wed Jun 1 12:09:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780326.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1vz6_A Ornithine acetyl-trans 100.0 0 0 725.7 23.9 256 19-288 6-261 (261)
2 >1vra_B Arginine biosynthesis 100.0 0 0 558.0 22.8 201 198-403 1-202 (202)
3 >2v4i_B Glutamate N-acetyltran 100.0 0 0 539.9 19.8 195 198-403 1-200 (200)
4 >2v4i_A Glutamate N-acetyltran 100.0 0 0 475.8 18.0 172 22-197 2-173 (173)
5 >1vra_A Arginine biosynthesis 100.0 0 0 362.2 11.1 142 21-163 2-144 (144)
6 >1vz6_A Ornithine acetyl-trans 100.0 4.1E-41 1.4E-45 291.1 11.2 114 289-403 1-119 (119)
7 >1vra_A Arginine biosynthesis 99.3 1.2E-12 3.5E-17 103.2 4.5 35 163-197 30-64 (64)
8 >1b65_A DMPA, protein (aminope 96.5 0.069 2E-06 32.1 11.1 81 169-250 53-156 (230)
9 >2drh_A PH0078 protein, 361AA 93.1 0.39 1.2E-05 27.1 6.7 226 11-251 13-291 (361)
10 >1g5m_A Protein (apoptosis reg 71.8 5.7 0.00017 19.4 4.1 64 263-339 48-111 (166)
11 >1f16_A Protein (apoptosis reg 67.8 7.9 0.00023 18.5 4.1 17 323-340 99-116 (192)
12 >2vof_A BCL-2-related protein 67.2 3.8 0.00011 20.5 2.4 36 301-342 67-102 (157)
13 >2ims_A Apoptosis regulator BA 65.8 2.4 7.2E-05 21.8 1.2 66 262-340 54-119 (171)
14 >1k3k_A Functional anti-apopto 60.4 3.5 0.0001 20.8 1.1 34 302-342 61-95 (158)
15 >2nl9_A Fusion protein consist 60.1 4.7 0.00014 19.9 1.8 18 323-341 83-101 (157)
16 >2v6q_A BHRF1 protein; alterna 58.9 3.8 0.00011 20.5 1.1 19 319-338 100-118 (173)
17 >2a5y_A Apoptosis regulator CE 57.6 3.1 9E-05 21.2 0.4 15 323-338 114-128 (204)
18 >3fdl_A Apoptosis regulator BC 57.3 2.9 8.6E-05 21.3 0.3 20 322-342 50-69 (130)
19 >1r2d_A Apoptosis regulator BC 55.0 5.1 0.00015 19.7 1.2 65 263-340 82-146 (218)
20 >2e7z_A Acetylene hydratase AH 54.1 14 0.00042 16.8 5.6 120 265-393 33-153 (166)
21 >2w3l_A BCL2-XL, apoptosis reg 53.9 6.4 0.00019 19.1 1.6 63 266-341 30-92 (144)
22 >1ohu_A Apoptosis regulator CE 53.5 15 0.00043 16.7 5.1 55 266-339 55-109 (175)
23 >1pq1_A Apoptosis regulator BC 47.2 7.8 0.00023 18.5 1.2 65 263-340 82-146 (196)
24 >1mk3_A BCL-W, apoptosis regul 45.6 9.4 0.00028 18.0 1.4 19 322-341 84-102 (178)
25 >1eu1_A Dimethyl sulfoxide red 45.0 20 0.00058 15.9 3.9 123 265-392 32-181 (195)
26 >1sq5_A Pantothenate kinase; P 37.2 11 0.00033 17.5 0.7 17 156-172 112-128 (245)
27 >1jqk_A CODH, carbon monoxide 33.0 30 0.00088 14.6 2.9 54 72-133 49-102 (253)
28 >3bk2_A RNAse J, metal depende 31.1 25 0.00074 15.2 1.7 20 113-132 84-103 (161)
29 >1uty_A Non-structural protein 28.7 22 0.00065 15.5 1.0 38 160-197 86-133 (187)
30 >1rm6_A 4-hydroxybenzoyl-COA r 26.7 38 0.0011 13.9 7.8 185 64-283 103-301 (365)
31 >1i9g_A Hypothetical protein R 26.2 39 0.0012 13.9 2.2 43 181-223 35-79 (213)
32 >1gnl_A HCP, hybrid cluster pr 25.9 39 0.0012 13.9 5.0 64 72-145 38-103 (199)
33 >2d8i_A T-cell lymphoma invasi 25.6 40 0.0012 13.8 2.7 45 348-392 58-102 (114)
34 >1kl7_A Threonine synthase; th 25.6 25 0.00075 15.1 0.9 15 208-222 19-33 (218)
35 >1wgx_A KIAA1903 protein; MYB 23.7 28 0.00084 14.8 0.9 31 303-340 13-43 (73)
36 >3bk2_A RNAse J, metal depende 23.6 43 0.0013 13.6 3.2 65 58-122 46-133 (134)
37 >1xks_A Nuclear pore complex p 23.1 34 0.00099 14.3 1.1 23 115-137 107-129 (132)
38 >1su8_A CODH 2, carbon monoxid 22.5 46 0.0014 13.4 1.8 61 61-131 13-73 (228)
39 >2v4j_B Sulfite reductase, dis 22.4 46 0.0014 13.4 3.4 35 188-222 87-123 (180)
40 >2hfx_A Carbonic anhydrase 3; 21.1 49 0.0014 13.2 2.2 16 189-204 196-211 (260)
No 1
>>1vz6_A Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine, N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces clavuligerus} (A:1-261)
Probab=100.00 E-value=0 Score=725.69 Aligned_cols=256 Identities=34% Similarity=0.482 Sum_probs=248.1
Q ss_pred CCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHH
Q ss_conf 78747479999980310188946999994899869998325778534348888872358802999937872234147989
Q gi|254780326|r 19 LLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGR 98 (416)
Q Consensus 19 l~~i~Gf~~~~~~aGiK~~~r~DL~li~~~~pa~~AgvFT~N~~~AAPV~~~k~~l~~~~~raivvNSGnANA~TG~~G~ 98 (416)
+..++||++++++||||+++|+||+||+++.||++|||||||+|+||||+|||++++++++|+|||||||||||||++|+
T Consensus 6 v~~P~Gf~~~g~~aGiK~~~r~Dlali~s~~pa~~AgvFT~N~~~AAPV~~~~~~l~~~~~ravvvNSGnANA~TG~~G~ 85 (261)
T 1vz6_A 6 PKTPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGE 85 (261)
T ss_dssp --CCTTEEEEEECCCSSTTCCCCEEEEEESSCCEEEEEECCCTTCCHHHHHHHHHTTTSBCCEEEEEEEECCCSCHHHHH
T ss_pred CCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCHHHHH
T ss_conf 89998489999995355699986899996899669999725875203639999875068840899943874434537799
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 99999999998764987330887114310224320222210012223458322688887643156575224668875696
Q gi|254780326|r 99 DTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGI 178 (416)
Q Consensus 99 ~~a~~~~~~~a~~l~~~~~~Vl~~STGVIG~~Lp~~ki~~~i~~l~~~l~~~~~~~aA~AImTTDt~pK~~~~~~~i~g~ 178 (416)
+|+++|++.+|+.|+|++++||++||||||+|||||+|+.+||++..+++.++|++||+||||||||||.+.+ +|+
T Consensus 86 ~da~~~~~~~A~~l~~~~~~Vl~~STGvIG~~lp~dki~~~i~~l~~~l~~~~~~~aA~AImTTDt~pK~~~i----~g~ 161 (261)
T 1vz6_A 86 ENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRV----SVG 161 (261)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEEEEESSCCCCHHHHHHHHTTCCCCSSSBCHHHHHHHTCSSCSSCEEEEE----EET
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEE----EEC
T ss_conf 9999999764233243763155402301211464124444333112455753577765675067531037899----613
Q ss_pred EEEEEEEEECCHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 28999985020002434522588999656439999999999860055541431676564422899632653467777688
Q gi|254780326|r 179 RVTINGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITD 258 (416)
Q Consensus 179 ~v~i~GiaKGsGMI~PnMATML~fi~TDa~i~~~~L~~~L~~~v~~SFN~IsVDGDtSTNDtv~l~AnG~~~~~~~~i~~ 258 (416)
+++|+|||||||||||||||||+||+|||.|+++.||++|++++++|||+|||||||||||||++||||+++
T Consensus 162 ~~~i~GiaKGsGMI~PnMATML~fi~TDA~i~~~~L~~~L~~~v~~SFN~ItVDGDtSTNDtvlllAnG~a~-------- 233 (261)
T 1vz6_A 162 GATLVGIAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAG-------- 233 (261)
T ss_dssp TEEEEEEEECSSSCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHTGGGBCSSSCCCSSCEEEEEEEEEEE--------
T ss_pred CCEEEEEEECCHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCC--------
T ss_conf 743788961054205431000789998235676889999998641450006535888877579999548755--------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 877779988887889999999986226300
Q gi|254780326|r 259 VSDKRLSLFRPALFDLLKDLALQVVCDGEG 288 (416)
Q Consensus 259 ~~~~~~~~f~~aL~~v~~~LA~~Iv~DGEG 288 (416)
.+++.+|+++|.+||++||+||||||||
T Consensus 234 --~~~~~~f~~aL~~v~~~LAk~Iv~DGEG 261 (261)
T 1vz6_A 234 --EVDAGEFEEALHTAALALVKDIASDGEG 261 (261)
T ss_dssp --ECCHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf --2108899999999999999998736544
No 2
>>1vra_B Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} (B:1-202)
Probab=100.00 E-value=0 Score=557.98 Aligned_cols=201 Identities=41% Similarity=0.594 Sum_probs=193.9
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 25889996564399999999998600555414316765644228996326534677776888777799888878899999
Q gi|254780326|r 198 TTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKD 277 (416)
Q Consensus 198 TML~fi~TDa~i~~~~L~~~L~~~v~~SFN~IsVDGDtSTNDtv~l~AnG~~~~~~~~i~~~~~~~~~~f~~aL~~v~~~ 277 (416)
||||||+|||+|+++.||++|+++|++|||+|||||||||||||++||||++++ ++ .+.+++++.+|+++|.+||++
T Consensus 1 TML~fi~TDA~i~~~~L~~~L~~~v~~SFN~IsVDGDtSTNDtv~llAnG~ag~--~~-i~~~~~~~~~f~~aL~~v~~~ 77 (202)
T 1vra_B 1 TXLSFVTTDANIDHGHLQGALSAITNETFNRITVDGDTSTNDXVVVXASGLAEN--ET-LTPEHPDWANFYKALQLACED 77 (202)
T ss_dssp CCEEEEEECCCCCHHHHHHHHHHHHHHTGGGBCSSSCCCSSCEEEEEECCTTCC--SC-CCTTSTTHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCC--CC-CCHHHHHHHHHHHHHHHHHHH
T ss_conf 989999977868999999999999872566278769888503798864002368--73-101367899999999999999
Q ss_pred HHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHEEEEECCE
Q ss_conf 99986226300213799998248999999999877357156655550678862445322202457765823349998999
Q gi|254780326|r 278 LALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDV 357 (416)
Q Consensus 278 LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~sg~~~d~~~i~i~ig~~ 357 (416)
||+|||||||||||||+|+|+||+++.+|+++||+|+||||||||+||+||| ||||+||+||+|++|||++++||||++
T Consensus 78 LAk~IvrDGEGatK~i~v~V~gA~~~~~A~~iA~sIa~S~LVKtAi~G~DpN-WGRI~aAiG~sg~~~d~~~i~i~~g~v 156 (202)
T 1vra_B 78 LAKQIARDGEGATKLIEVEVTGAANDQEAGXVAKQIVGSDLVKTAIYGADAN-WGRIICAIGYSGCEVNQETIDIAIGPI 156 (202)
T ss_dssp HHHHHHHTSTTCSCEEEEEEEEESSHHHHHHHHHHHHTCHHHHHHHHTTCCC-HHHHHHHHHHSSSCCCTTSCEEEETTE
T ss_pred HHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCHHHHHHHHHHCCCC-HHHHHHHHHHCCCCCCCCCCEEEECCC
T ss_conf 9999873756650589999824897899999999970319999988502886-135411222056430012120243130
Q ss_pred EEEECCCCCCCCCHHHHHHHHCC-CCEEEEEECCCCCEEEEEEECCC
Q ss_conf 98717731878899999986254-87799997268981289995458
Q gi|254780326|r 358 RIANNGEPEINFSQESVRSIVKK-KCVPITVDLQIGNGIHTVWTCDF 403 (416)
Q Consensus 358 ~v~~~G~~~~~~~e~~~~~~~~~-~~i~i~idLg~G~~~~t~~tcDL 403 (416)
+|+++|.| .+|+++++.++|++ +||.|.||||.|++++++|||||
T Consensus 157 ~v~~~G~~-~~~~~~~~~~~~~~~~ei~I~vdL~~G~~~~t~wtcDL 202 (202)
T 1vra_B 157 VTLKQSEP-TGFSEEEATAYLKEADPVKISVNLHIGNGTGKAWGCDL 202 (202)
T ss_dssp EEEETTEE-CCCCHHHHHHHHHHCSSEEEEEECCSSSEEEEEEEECC
T ss_pred EEEECCCC-CCCCHHHHHHHHHCCCEEEEEEEECCCCCCEEEEECCC
T ss_conf 00217835-77558999999726882799999687687179994869
No 3
>>2v4i_B Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_D* 2vzk_B* (B:1-200)
Probab=100.00 E-value=0 Score=539.95 Aligned_cols=195 Identities=37% Similarity=0.576 Sum_probs=187.8
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 25889996564399999999998600555414316765644228996326534677776888777799888878899999
Q gi|254780326|r 198 TTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKD 277 (416)
Q Consensus 198 TML~fi~TDa~i~~~~L~~~L~~~v~~SFN~IsVDGDtSTNDtv~l~AnG~~~~~~~~i~~~~~~~~~~f~~aL~~v~~~ 277 (416)
.||+||+|||+|+++.||++|+++|++|||||||||||||||||++||||+++ .+++.+|+++|.+||++
T Consensus 1 ~ML~fi~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtSTNDtv~~lAnG~sg----------~~~~~~f~~aL~~v~~~ 70 (200)
T 2v4i_B 1 XLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAG----------EVDAGEFEEALHTAALA 70 (200)
T ss_dssp CCEEEEEECCBCCHHHHHHHHHHHHHHTGGGBCSSSCCCSCCEEEEEEECTTC----------BCCHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHCCCCCC----------CCCHHHHHHHHHHHHHH
T ss_conf 91899997785899999999999987257628876888863302331333469----------86315678899999999
Q ss_pred HHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCC--CCCCHHHEEEEEC
Q ss_conf 99986226300213799998248999999999877357156655550678862445322202457--7658233499989
Q gi|254780326|r 278 LALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSG--VLVDRDRLSVWFG 355 (416)
Q Consensus 278 LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~sg--~~~d~~~i~i~ig 355 (416)
||||||||||||||||+|+|+||+++.+|+++||+|+||||||||+||+||| ||||++|+||++ ++|||++++||||
T Consensus 71 LAk~IvrDGEGAtKli~v~V~gA~~~~~A~~iArsIa~S~LVKtAi~G~DpN-WGRI~~AiG~sg~~v~~dp~~v~i~~~ 149 (200)
T 2v4i_B 71 LVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPN-WGRVAMAIGKCSDDTDIDQERVTIRFG 149 (200)
T ss_dssp HHHHHHHSSTTCCCEEEEEEEEESSHHHHHHHHHHHHTCHHHHHHHHTTCCC-HHHHHHHHHTCTTCTTCCTTTCEEEET
T ss_pred HHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHCCCCC-HHHHHHHHCCCCCCCCCCCCCCEEEEC
T ss_conf 9999972732234279999964899899999999861019999988501653-666777535444454436432105526
Q ss_pred CEEEEECCCC---CCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 9998717731---87889999998625487799997268981289995458
Q gi|254780326|r 356 DVRIANNGEP---EINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDF 403 (416)
Q Consensus 356 ~~~v~~~G~~---~~~~~e~~~~~~~~~~~i~i~idLg~G~~~~t~~tcDL 403 (416)
++.++++|.+ ..+|+|++++++|+++||+|.||||.|++++++|||||
T Consensus 150 ~~~v~~~g~~~~~~~~~de~~~~~~l~~~ei~I~idLg~G~~~~t~w~cDL 200 (200)
T 2v4i_B 150 EVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDL 200 (200)
T ss_dssp TEEEECC-------CHHHHHHHHHHHHSSEEEEEEECCSSSEEEEEEEECC
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCC
T ss_conf 778763245676540667999999845686899999787881289994859
No 4
>>2v4i_A Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_A* (A:)
Probab=100.00 E-value=0 Score=475.83 Aligned_cols=172 Identities=33% Similarity=0.480 Sum_probs=168.3
Q ss_pred CCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHH
Q ss_conf 47479999980310188946999994899869998325778534348888872358802999937872234147989999
Q gi|254780326|r 22 IKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTV 101 (416)
Q Consensus 22 i~Gf~~~~~~aGiK~~~r~DL~li~~~~pa~~AgvFT~N~~~AAPV~~~k~~l~~~~~raivvNSGnANA~TG~~G~~~a 101 (416)
++||++++++||||+++|+||+||+++.||++|||||+|+|+||||+|||++++++++|+|||||||||||||++|++|+
T Consensus 2 P~Gf~~~g~~aGiK~~~r~Dlali~s~~p~~~AgvFT~N~~~AApV~~~~~~l~~~~~raiivNSGnANA~TG~~G~~~a 81 (173)
T 2v4i_A 2 PRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENA 81 (173)
T ss_dssp CTTEEEEEECCCSSTTCCCCEEEEEESSCEEEEEEECCCTTCCHHHHHHHHHTSSSBCCEEEEEESCCCCSCHHHHHHHH
T ss_pred CCCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHH
T ss_conf 98599999995355599986899996799559999833873104153112314456203999940322446605678999
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEE
Q ss_conf 99999998764987330887114310224320222210012223458322688887643156575224668875696289
Q gi|254780326|r 102 RFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVT 181 (416)
Q Consensus 102 ~~~~~~~a~~l~~~~~~Vl~~STGVIG~~Lp~~ki~~~i~~l~~~l~~~~~~~aA~AImTTDt~pK~~~~~~~i~g~~v~ 181 (416)
++|++.+|+.|+|++++||++||||||+|||||+|+++||++..+|++++|++||+||||||||||.++++ |++++
T Consensus 82 ~~~~~~~a~~l~i~~~~Vl~aSTGVIG~~lp~dki~~~i~~l~~~l~~~~~~~aA~AImTTDt~pK~~~~~----g~~v~ 157 (173)
T 2v4i_A 82 REVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRVS----VGGAT 157 (173)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEEESCSSCCCCHHHHHHHHTTCCCCSSCBCHHHHHHHHCSSCSSCEEEEEE----ETTEE
T ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEE----CCCEE
T ss_conf 99998765305436653566213323565707777655554444330022888744355067750799995----79999
Q ss_pred EEEEEECCHHCCCCCC
Q ss_conf 9998502000243452
Q gi|254780326|r 182 INGLAKGAGMIAPDMA 197 (416)
Q Consensus 182 i~GiaKGsGMI~PnMA 197 (416)
|+||||||||||||||
T Consensus 158 i~GiaKGsGMI~PnMA 173 (173)
T 2v4i_A 158 LVGIAKGVGMLEPDMA 173 (173)
T ss_dssp EEEEEECSSSCCCCCC
T ss_pred EEEEEEEHHHCCCCCC
T ss_conf 9999808664584779
No 5
>>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} (A:31-174)
Probab=100.00 E-value=0 Score=362.17 Aligned_cols=142 Identities=35% Similarity=0.446 Sum_probs=138.5
Q ss_pred CCCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHC-CCCCEEEEEECCCCCCCCCHHHHH
Q ss_conf 7474799999803101889469999948998699983257785343488888723-588029999378722341479899
Q gi|254780326|r 21 PIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLS-HGIARALIVNSGIANAFTGKRGRD 99 (416)
Q Consensus 21 ~i~Gf~~~~~~aGiK~~~r~DL~li~~~~pa~~AgvFT~N~~~AAPV~~~k~~l~-~~~~raivvNSGnANA~TG~~G~~ 99 (416)
.++||++++++||||++ |+||+||+++.||++|||||+|+|+||||+|||++++ ++++|+|||||||||||||++|++
T Consensus 2 ap~Gf~~~~~~aGiK~~-~~Dlali~s~~p~~~AgvFT~n~~~AApV~~~~~~l~~~~~~raivvNSGnANA~TG~~G~~ 80 (144)
T 1vra_A 2 SAKGFSAVGIHTGVKRK-RKDLGAIVCEVPASSAAVYTLNKVQAAPLKVTQESIAVEGKLQAXIVNSGIANACTGKRGLD 80 (144)
T ss_dssp GSTTEEEEEECCSSSSS-SCCEEEEEEEEEEEEEEEEBCCSSCCHHHHHHHHHHHHHSEEEEEEEEEEECCCSCHHHHHH
T ss_pred CCCCEEEEEEEECCCCC-CCCEEEEEECCCCEEEEEECCCCEEEEEEHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHH
T ss_conf 78856999899577789-98899999689965999976895060045776777741587249998335555455636589
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9999999998764987330887114310224320222210012223458322688887643156
Q gi|254780326|r 100 TVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTD 163 (416)
Q Consensus 100 ~a~~~~~~~a~~l~~~~~~Vl~~STGVIG~~Lp~~ki~~~i~~l~~~l~~~~~~~aA~AImTTD 163 (416)
|+++|++.+++.|+|++++||++||||||+|||||+|++++|++..+|++++|++||+||||||
T Consensus 81 ~a~~~~~~~a~~l~~~~~~VlvaSTGVIG~~Lp~d~i~~~i~~~~~~l~~~~~~~aA~AImTTD 144 (144)
T 1vra_A 81 DAYTXRAVGAETFHIPEHYVAVTSTGVIGEFLPXDVITNGIRQLKPEATIEGAHAFNEAILTTD 144 (144)
T ss_dssp HHHHHHHHHHHHHTSCGGGEEEEEEEESSCCCCHHHHHHHHHHCCCBSSHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9999998654114303331244313423354873777655542010011678999985630899
No 6
>>1vz6_A Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine, N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces clavuligerus} (A:262-380)
Probab=100.00 E-value=4.1e-41 Score=291.11 Aligned_cols=114 Identities=39% Similarity=0.617 Sum_probs=109.5
Q ss_pred CCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCC--CCCCHHHEEEEECCEEEEECCCCC
Q ss_conf 213799998248999999999877357156655550678862445322202457--765823349998999987177318
Q gi|254780326|r 289 ASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSG--VLVDRDRLSVWFGDVRIANNGEPE 366 (416)
Q Consensus 289 atk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~sg--~~~d~~~i~i~ig~~~v~~~G~~~ 366 (416)
|||||||+|+||+|+.+|+.+||+|+||||||||+||+||| ||||+||+|||+ ++|||++++|+||+++++++|.+.
T Consensus 1 ATKlieV~V~gA~~~~~A~~iArsIa~S~LVKtAi~G~DpN-WGRI~aAiG~sg~~v~~d~~~v~i~~~~~~v~~~g~~~ 79 (119)
T 1vz6_A 1 AAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPN-WGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARG 79 (119)
T ss_dssp CSSEEEEEEEEESSHHHHHHHHHHHHTCHHHHHHHHTTCCC-HHHHHHHHHTCTTCTTCCTTTCEEEETTEEEECC----
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHCCCCCCCCCCHHHEEEEECCEEEEECCCCC
T ss_conf 41589999768999999999999975339999887355884-77776652556666677613169998999999636678
Q ss_pred ---CCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf ---7889999998625487799997268981289995458
Q gi|254780326|r 367 ---INFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDF 403 (416)
Q Consensus 367 ---~~~~e~~~~~~~~~~~i~i~idLg~G~~~~t~~tcDL 403 (416)
.+|+|+.++++|+++||.|.||||.|++++|+|||||
T Consensus 80 ~~~~~~~e~~~~~~l~~~ei~I~idL~~G~~~~t~w~cDL 119 (119)
T 1vz6_A 80 DQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDL 119 (119)
T ss_dssp ---CHHHHHHHHHHTTSSEEEEEEECCSSSEEEEEEEECC
T ss_pred CCCCHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCC
T ss_conf 8672566999998755783899999788882189992769
No 7
>>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} (A:1-30,A:175-208)
Probab=99.32 E-value=1.2e-12 Score=103.18 Aligned_cols=35 Identities=34% Similarity=0.522 Sum_probs=34.1
Q ss_pred CCCCCEEEEEEEECCCEEEEEEEEECCHHCCCCCC
Q ss_conf 65752246688756962899998502000243452
Q gi|254780326|r 163 DRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMA 197 (416)
Q Consensus 163 Dt~pK~~~~~~~i~g~~v~i~GiaKGsGMI~PnMA 197 (416)
-||||.++++++++|++|+|.||||||||||||||
T Consensus 30 ~T~pK~~s~e~~I~Gk~VtI~GIAKGSGMIhPNMA 64 (64)
T 1vra_A 30 VTVEKHTCYQTIVNGKTVTVGGVAKGSGXIHPNXA 64 (64)
T ss_dssp GSSCCEEEEEEEETTEEEEEEEEEECSSSCCCCBC
T ss_pred ECCCEEEEEEEEECCCEEEEEEEEEECCCCCCCCC
T ss_conf 99870589999989918999999804204683679
No 8
>>1b65_A DMPA, protein (aminopeptidase); hydrolase, peptide degradation, NTN hydrolase; 1.82A {Ochrobactrum anthropi} (A:70-101,A:178-375)
Probab=96.50 E-value=0.069 Score=32.06 Aligned_cols=81 Identities=20% Similarity=0.261 Sum_probs=61.5
Q ss_pred EEEEEEECCCEEEEEEEE-----------------------ECCHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 466887569628999985-----------------------020002434522588999656439999999999860055
Q gi|254780326|r 169 AVRTVDIDGIRVTINGLA-----------------------KGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYS 225 (416)
Q Consensus 169 ~~~~~~i~g~~v~i~Gia-----------------------KGsGMI~PnMATML~fi~TDa~i~~~~L~~~L~~~v~~S 225 (416)
+++.+..++..++++-+. +..-+-.|.+.|+++.|.|||.+++..|+++=+++-+--
T Consensus 53 ASr~l~~~~g~~tVGALv~~N~~g~~~~~~~g~~~g~~~~~~~~~~~~~~~nTtI~VVATDApLtk~QlkRlA~~AhdGl 132 (230)
T 1b65_A 53 ASRVVEFGGRSFTIGALVQANHGQRDWLTIAGVPVGQHMRDGTPQSQLQERGSIIVVLATDLPLMPHQLKRLARRASIGI 132 (230)
T ss_dssp EEEEEEETTEEEEEEEEEEECCCCGGGCCBTTBCHHHHCCTTCHHHHC----CEEEEEEECSCCCHHHHHHHHHTHHHHH
T ss_pred CEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 40578607883689999974378860235477310102233567777788998899999598279899878998753445
Q ss_pred CCEEEECCCCCCCCEEEEEECCCCC
Q ss_conf 5414316765644228996326534
Q gi|254780326|r 226 FNSITVDGDTSTSDTLLLFATGTVL 250 (416)
Q Consensus 226 FN~IsVDGDtSTNDtv~l~AnG~~~ 250 (416)
-..|+. .+|.--|+|+.||||...
T Consensus 133 ARai~P-~ht~DGDtvfA~STg~~~ 156 (230)
T 1b65_A 133 GRNGTP-GGNNSGDIFIAFSTANQR 156 (230)
T ss_dssp HTTTCC-CCTTCEEEEEEEECCSCC
T ss_pred HCCCCC-CCCCCCCEEEEECCCCCC
T ss_conf 423667-779984679995057766
No 9
>>2drh_A PH0078 protein, 361AA long hypothetical D-aminopeptidase; structural genomics, NPPSFA; 2.10A {Pyrococcus horikoshii OT3} (A:)
Probab=93.12 E-value=0.39 Score=27.10 Aligned_cols=226 Identities=15% Similarity=0.109 Sum_probs=118.3
Q ss_pred CCCCCCCCCCCCCCEEEEEEEE--CC------CCCCCCEEEEEEECCCCEE-----EEE-----ECCCCCCCCCHHHHHH
Q ss_conf 6887789878747479999980--31------0188946999994899869-----998-----3257785343488888
Q gi|254780326|r 11 LQSHVSPVLLPIKGVRLSAAAL--GI------KYVGRDDVFLMVFDNPASV-----AGV-----FTRSSCPSAPVDFCKG 72 (416)
Q Consensus 11 ~~~~~~p~l~~i~Gf~~~~~~a--Gi------K~~~r~DL~li~~~~pa~~-----Agv-----FT~N~~~AAPV~~~k~ 72 (416)
+.|--...+..|+||+++...- |- ....+--+.+|..+.++.. +|. ||+..= ..|-.+
T Consensus 13 ~~~G~~naITDV~GV~VGH~t~~~g~~~~~~~d~~~~TGvTvIlp~~g~~~~vdvrgga~~~np~treT~----ll~~~~ 88 (361)
T 2drh_A 13 FKPGKRNKITDVKGVKVGHVTLIKGKGKLIPGKGPVRTGVTAILPHEGNIYKEKVLAGAFVMNGYSKPVG----LIQLWE 88 (361)
T ss_dssp SCCCSSCSGGGSTTCEEEEEEEEECCSSCBTTTBCEEEEEEEEESSSSCTTTEEEEEEEEEEEECSCCBS----HHHHHH
T ss_pred CCCCCCCCCCCCCCCEEECEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCCCC----CCCHHH
T ss_conf 7889988210479977733072268864346888777455899538997356763230222589864224----458656
Q ss_pred HHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-----EE-EEE---CCCCCCCCCCHHH-HHHHCCC
Q ss_conf 723588029999378722341479899999999999876498733-----08-871---1431022432022-2210012
Q gi|254780326|r 73 NLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEE-----EV-YVA---STGIIGEFLDVAL-FDGVLSK 142 (416)
Q Consensus 73 ~l~~~~~raivvNSGnANA~TG~~G~~~a~~~~~~~a~~l~~~~~-----~V-l~~---STGVIG~~Lp~~k-i~~~i~~ 142 (416)
... ...+|++-. |-.=|+...--+..++.+.-..... .| ..+ .=|=|..+.+.+. ...++..
T Consensus 89 ~~~--~v~~IvLTg------gsa~Gl~a~~gV~~~lee~~~g~~~~~~~~PiV~~~~Dl~l~d~~~~~~~~~~~~aA~~a 160 (361)
T 2drh_A 89 LGT--IETPIILTN------TLSIGTAVEGLLDYILEENEDIGVTTGSVNPLVLECNDSYLNDIRGRHVKREHVVEAIKR 160 (361)
T ss_dssp HCE--ECSCEEEEE------GGGHHHHHHHHHHHHHHHCTTBTTTBCCCCCEEEEECCTTTSCGGGCCCCHHHHHHHHHH
T ss_pred CCC--CEEEEEECC------CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 267--136788527------772456788999999986789886776346543225776337866689726778999985
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCC---CEEEEEEEECCCEEEEEEEEE----C------------------CHHCCCCCC
Q ss_conf 223458322688887643156575---224668875696289999850----2------------------000243452
Q gi|254780326|r 143 MLCDATDDAWLDSAKAMMTTDRYA---KVAVRTVDIDGIRVTINGLAK----G------------------AGMIAPDMA 197 (416)
Q Consensus 143 l~~~l~~~~~~~aA~AImTTDt~p---K~~~~~~~i~g~~v~i~GiaK----G------------------sGMI~PnMA 197 (416)
......+. -.. |-.=||.-.|. ..+++.+.+++..++++-+.- | .-+-.|.+.
T Consensus 161 a~~~v~eG-~vG-AGtGa~~g~~KGGiGtaSr~~~~~~~~~tVGalv~~N~~g~~~~~~~g~~~g~~~~~~~~~~~~~~n 238 (361)
T 2drh_A 161 ADEDFEEG-AVG-AGTGMSAFEFKGGIGSASRIVEIEGKKYTVGALVLSNFGRREDLTIAGVPVGLELKNWPGRGGEGKG 238 (361)
T ss_dssp CBSSCCCB-SSG-GGTTCEETTEECEEEEEEEEEESSSCEEEEEEEEEECCCCGGGCCBTTBCHHHHTTTSSCCC-----
T ss_pred CCCCCCCC-CCC-CCCEEEECCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
T ss_conf 46775565-756-6611363455666650357750378427999998523688655444762556011025767788899
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCC
Q ss_conf 258899965643999999999986005554143167656442289963265346
Q gi|254780326|r 198 TTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLG 251 (416)
Q Consensus 198 TML~fi~TDa~i~~~~L~~~L~~~v~~SFN~IsVDGDtSTNDtv~l~AnG~~~~ 251 (416)
|.+..|.|||.+++..|+++-+++-+- +-|----..|+--|+++.||+|....
T Consensus 239 TtI~VVATDApL~~~ql~RlA~~A~~G-lAR~i~p~ht~dGD~vfa~ST~~~~~ 291 (361)
T 2drh_A 239 SIIMIIATDAPLTGRQLNRVAKRAIVG-LARTGGYAYNGSGDIAVAFSTANRIK 291 (361)
T ss_dssp CEEEEEEECSCCCHHHHHHHHHHHHHH-HHHTTCCCCTTCEEEEEEEEEEEEEE
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHH-HCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 889999969938999999999986410-20306677899868457862267677
No 10
>>1g5m_A Protein (apoptosis regulator BCL-2 with putative flexible loop replaced with A portion...; NMR {Homo sapiens} (A:)
Probab=71.84 E-value=5.7 Score=19.38 Aligned_cols=64 Identities=19% Similarity=0.181 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHC
Q ss_conf 79988887889999999986226300213799998248999999999877357156655550678862445322202
Q gi|254780326|r 263 RLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVG 339 (416)
Q Consensus 263 ~~~~f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG 339 (416)
......+.|..++.+|-++.-..=++...-+. .+...+...-..|+++ +|....| ||||++-.-
T Consensus 48 ~~~~v~~~L~~igdel~~~~~~~f~~~~~~l~------~~~~~~~~~f~~v~~e------lf~dgin-WgRival~~ 111 (166)
T 1g5m_A 48 ESEVVHLALRQAGDDFSRRYRGDFAEMSSQLH------LTPFTARGRFATVVEE------LFRDGVN-WGRIVAFFE 111 (166)
T ss_dssp SSSSHHHHHHHHHHHHHHHHCSSSTGGGGSSC------CSHHHHHHHHHHHHHH------HTTSCCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCC------CCCCCCCCCHHHHHHH------HHHCCCC-HHHEEEEEE
T ss_conf 57899999997052576774254888740216------5653235307999999------9872655-123356765
No 11
>>1f16_A Protein (apoptosis regulator BAX, membrane isoform alpha); helical protein; NMR {Homo sapiens} (A:)
Probab=67.82 E-value=7.9 Score=18.48 Aligned_cols=17 Identities=35% Similarity=0.694 Sum_probs=12.2
Q ss_pred HHCC-CCCCHHHHHHHHCC
Q ss_conf 5067-88624453222024
Q gi|254780326|r 323 FASE-SFGWWGRIVMAVGK 340 (416)
Q Consensus 323 ~~G~-DpN~WGRI~aAiG~ 340 (416)
+|.. +.| ||||++-..-
T Consensus 99 lF~dg~in-WGRIval~~F 116 (192)
T 1f16_A 99 MFSDGNFN-WGRVVALFYF 116 (192)
T ss_dssp HTSSSSCC-SHHHHHHHHH
T ss_pred HHHCCCCC-HHHHHHHHHH
T ss_conf 98469985-8999999999
No 12
>>2vof_A BCL-2-related protein A1; BH3, cytoplasm, apoptosis, Pro-surviVal, mitochondrion, protein-protein complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 2vm6_A (A:)
Probab=67.16 E-value=3.8 Score=20.54 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCC
Q ss_conf 999999999877357156655550678862445322202457
Q gi|254780326|r 301 ADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSG 342 (416)
Q Consensus 301 ~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~sg 342 (416)
.++..++..=.+|+++. +..++.| ||||++-..-++
T Consensus 67 ~~~~~~~~~f~~V~~el-----F~dg~in-WGRIval~~f~~ 102 (157)
T 2vof_A 67 ESIDTARIIFNQVXEKE-----FEDGIIN-WGRIVTIFAFGG 102 (157)
T ss_dssp CSHHHHHHHHHHHHHHH-----HTTCCCC-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-----HCCCCCC-HHHHHHHHHHHH
T ss_conf 99524999999999999-----5689997-799999999999
No 13
>>2ims_A Apoptosis regulator BAK; dimer; 1.48A {Homo sapiens} PDB: 2imt_A 2jcn_A 2yv6_A 2jby_B 2voh_B* (A:)
Probab=65.82 E-value=2.4 Score=21.83 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCC
Q ss_conf 7799888878899999999862263002137999982489999999998773571566555506788624453222024
Q gi|254780326|r 262 KRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGK 340 (416)
Q Consensus 262 ~~~~~f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~ 340 (416)
+........|..++.+|-++--..=++..+-+. .++..+...=..|++ -+|....| ||||++-.--
T Consensus 54 ~~~~~v~~~L~~igdele~~~~~~f~~~~~~l~------~~~~~~~~~f~~Va~------elF~dgin-WGRIval~~F 119 (171)
T 2ims_A 54 STXGQVGRQLAIIGDDINRRYDSEFQTXLQHLQ------PTAENAYEYFTKIAT------SLFESGIN-WGRVVALLGF 119 (171)
T ss_dssp SHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCC------SSHHHHHHHHHHHHH------HHTTTCCC-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCCCCHHHHHHHHHH------HHHCCCCC-HHHHHHHHHH
T ss_conf 449999999999999999986999999999738------995328999999999------99638986-9999999999
No 14
>>1k3k_A Functional anti-apoptotic factor VBCL-2 homolog; solution structure, apoptosis; NMR {Human herpesvirus 8} (A:)
Probab=60.40 E-value=3.5 Score=20.83 Aligned_cols=34 Identities=9% Similarity=0.169 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHCC-CCCCHHHHHHHHCCCC
Q ss_conf 9999999987735715665555067-8862445322202457
Q gi|254780326|r 302 DCASAKKVALSIANSPLVKTAFASE-SFGWWGRIVMAVGKSG 342 (416)
Q Consensus 302 ~~~~A~~ia~sIa~S~LvKtA~~G~-DpN~WGRI~aAiG~sg 342 (416)
+...+...-..|+. -+|.. .+| ||||++-+.-++
T Consensus 61 ~~~~~~~~f~~v~~------~lf~dg~in-WGRIval~~F~~ 95 (158)
T 1k3k_A 61 HSTTGIDQLGLSML------QVSGDGNMN-WGRALAILTFGS 95 (158)
T ss_dssp CHHHHHHHHHTHHH------HHCSSCSCC-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH------HHHHCCCCC-HHHHHHHHHHHH
T ss_conf 97768999999999------998369975-999999999999
No 15
>>2nl9_A Fusion protein consisting of induced myeloid leukemia cell differentiation protein...; apoptosis, MCL-1, BIM; HET: MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A 2pqk_A 1wsx_A 2jm6_B 2roc_A 2rod_A (A:)
Probab=60.09 E-value=4.7 Score=19.95 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=12.2
Q ss_pred HHC-CCCCCHHHHHHHHCCC
Q ss_conf 506-7886244532220245
Q gi|254780326|r 323 FAS-ESFGWWGRIVMAVGKS 341 (416)
Q Consensus 323 ~~G-~DpN~WGRI~aAiG~s 341 (416)
+|. .++| ||||++-+.-+
T Consensus 83 lf~dg~~n-WGRIval~~F~ 101 (157)
T 2nl9_A 83 VFSDGVTN-WGRIVTLISFG 101 (157)
T ss_dssp HGGGSCCC-HHHHHHHHHHH
T ss_pred HHCCCCCC-HHHHHHHHHHH
T ss_conf 97268975-57899999999
No 16
>>2v6q_A BHRF1 protein; alternative splicing, membrane, apoptosis, epstein-BARR virus; 2.7A {Epstein-barr virus} PDB: 1q59_A (A:)
Probab=58.94 E-value=3.8 Score=20.54 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=13.8
Q ss_pred HHHHHHCCCCCCHHHHHHHH
Q ss_conf 65555067886244532220
Q gi|254780326|r 319 VKTAFASESFGWWGRIVMAV 338 (416)
Q Consensus 319 vKtA~~G~DpN~WGRI~aAi 338 (416)
+.--|+-+||| |||+++=+
T Consensus 100 f~eiFh~gdp~-lGR~laWl 118 (173)
T 2v6q_A 100 FLEIFHRGDPS-LGRALAWM 118 (173)
T ss_dssp HHHHHSSSCCC-HHHHHHHH
T ss_pred HHHHHCCCCCC-HHHHHHHH
T ss_conf 99996279982-88999999
No 17
>>2a5y_A Apoptosis regulator CED-9; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} (A:)
Probab=57.60 E-value=3.1 Score=21.19 Aligned_cols=15 Identities=13% Similarity=0.445 Sum_probs=11.3
Q ss_pred HHCCCCCCHHHHHHHH
Q ss_conf 5067886244532220
Q gi|254780326|r 323 FASESFGWWGRIVMAV 338 (416)
Q Consensus 323 ~~G~DpN~WGRI~aAi 338 (416)
+|....| ||||++-+
T Consensus 114 lf~~gin-WGRIValf 128 (204)
T 2a5y_A 114 TDQSPMS-YGRLIGLI 128 (204)
T ss_dssp --CCTTC-HHHHHHHH
T ss_pred HHCCCCC-HHHHHHHH
T ss_conf 5037887-99999999
No 18
>>3fdl_A Apoptosis regulator BCL-X; helical bundle, peptide-protein complex, apoptosis, alternative splicing, membrane, mitochondrion, nucleus, transmembrane; 1.78A {Homo sapiens} PDB: 3fdm_A 3inq_A* 3io8_A 2o2m_A* 2o2n_A* (A:29-158)
Probab=57.35 E-value=2.9 Score=21.35 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=15.6
Q ss_pred HHHCCCCCCHHHHHHHHCCCC
Q ss_conf 550678862445322202457
Q gi|254780326|r 322 AFASESFGWWGRIVMAVGKSG 342 (416)
Q Consensus 322 A~~G~DpN~WGRI~aAiG~sg 342 (416)
-+|..+.| ||||++...-++
T Consensus 50 ~lf~dgin-WGRIval~~F~~ 69 (130)
T 3fdl_A 50 ELFRDGVN-WGRIVAFFSFGG 69 (130)
T ss_dssp HHTTTCCC-HHHHHHHHHHHH
T ss_pred HHHCCCCC-HHHHHHHHHHHH
T ss_conf 98228997-999999999999
No 19
>>1r2d_A Apoptosis regulator BCL-X; monomeric, alpha-helical; 1.95A {Homo sapiens} (A:)
Probab=54.98 E-value=5.1 Score=19.74 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCC
Q ss_conf 799888878899999999862263002137999982489999999998773571566555506788624453222024
Q gi|254780326|r 263 RLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGK 340 (416)
Q Consensus 263 ~~~~f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~ 340 (416)
......+.|..++.+|-++.-..=++...-+.+. ... +...-+.|++ -+|....| ||||++-+.-
T Consensus 82 ~~~~v~~~L~~igdele~~~~~~f~~~~~~l~~~--~~~----~~~~f~~Va~------elF~dgin-WGRIval~~F 146 (218)
T 1r2d_A 82 PMAAVKQALREAGDEFELRYRRAFSDLTSQLHIT--PGT----AYQSFEQVVN------ELFRDGVN-WGRIVAFFSF 146 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHCCC--TTC----CHHHHHHHHG------GGGTTCCC-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCC----HHHHHHHHHH------HHHCCCCC-HHHHHHHHHH
T ss_conf 5479999999999999999899999999961889--860----6999999999------99538996-8999999999
No 20
>>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus} (A:46-136,A:384-458)
Probab=54.05 E-value=14 Score=16.78 Aligned_cols=120 Identities=7% Similarity=0.017 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCC
Q ss_conf 98888788999999998622630021379999824899999999987735715665555067886244532220245776
Q gi|254780326|r 265 SLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVL 344 (416)
Q Consensus 265 ~~f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~sg~~ 344 (416)
..|++||+.+...|.+-+-..|-.+--++.-.=.......-+++.++++...+..-.+.+ ++ ||--...+...-..
T Consensus 33 isWdeAl~~ia~~l~~i~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~n~~~~~~~---~~-~~~~~~~~~~~~~~ 108 (166)
T 2e7z_A 33 ISWDQALDEIAEKLKKIIAKYGPESLGVSQTEINQQSEYGTLRRFMNLLGSPNWTSAMYM---GA-FMANPTALFTAMAT 108 (166)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCGGGEEEEECGGGTCCCTTHHHHHHHHHTCCCEECGGGS---SC-SCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC---CC-CCCCCHHHHHHHHH
T ss_conf 289999999999999999975997599981687778999999999997099976786306---64-33463167777650
Q ss_pred CCHHHEEEEECCEEEEECCCC-CCCCCHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 582334999899998717731-8788999999862548779999726898
Q gi|254780326|r 345 VDRDRLSVWFGDVRIANNGEP-EINFSQESVRSIVKKKCVPITVDLQIGN 393 (416)
Q Consensus 345 ~d~~~i~i~ig~~~v~~~G~~-~~~~~e~~~~~~~~~~~i~i~idLg~G~ 393 (416)
-+|.+|+..+ ++ .+.| ...-+...+.+.+++-+..|.+|.-.-+
T Consensus 109 ~~~~~ik~l~----~~-~~Np~~~~p~~~~~~~al~kld~vV~~d~~~te 153 (166)
T 2e7z_A 109 EKPYPVKAFF----AL-ASNALMGYANQQNALKGLMNQDLVVCYDQFMTP 153 (166)
T ss_dssp CCSSCCCEEE----EE-SCCGGGSSSCHHHHHHHHHTCSEEEEEESSCCT
T ss_pred CCCCCEEEEE----EE-CCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 3777528999----93-786101187504556665314516873145771
No 21
>>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A* (A:)
Probab=53.92 E-value=6.4 Score=19.07 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCC
Q ss_conf 8888788999999998622630021379999824899999999987735715665555067886244532220245
Q gi|254780326|r 266 LFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKS 341 (416)
Q Consensus 266 ~f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~s 341 (416)
...+.|..++.+|-++--..=++..+-+ .+ ++..+...-..|+. -+|....| ||||++-+.-+
T Consensus 30 ~~~~~L~~~~~~le~~~~~~f~~~~~~l--~i----~~~~~~~~f~~va~------elf~dgin-WGRIval~~F~ 92 (144)
T 2w3l_A 30 VVHKTLREAGDDFSRRYRRDFAEMSSGL--HL----TPFTARGRFATVVE------ELFRDGVN-WGRIVAFFEFG 92 (144)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHTTC--CC----CTTTHHHHHHHHHH------HHTTTCCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CC----CCCCHHHHHHHHHH------HHHCCCCC-HHHHHHHHHHH
T ss_conf 9999999999999998799999999971--99----96638999999999------99658996-99999999999
No 22
>>1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A {Caenorhabditis elegans} (A:)
Probab=53.47 E-value=15 Score=16.72 Aligned_cols=55 Identities=11% Similarity=0.210 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHC
Q ss_conf 88887889999999986226300213799998248999999999877357156655550678862445322202
Q gi|254780326|r 266 LFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVG 339 (416)
Q Consensus 266 ~f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG 339 (416)
+|++.......++++++--+-+. ....-..+++.+....+++ .-.| ||||++-.-
T Consensus 55 ele~~~~~~~~~~~~~l~i~~~~-------------~~~~f~~v~~~~f~~~if~-----~gin-WGRIVal~~ 109 (175)
T 1ohu_A 55 IFEKKHAENFETFSEQLLAVPRI-------------SFSLYQDVVRTVGNAQTDQ-----SPXS-YGRLIGLIS 109 (175)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSC-------------CHHHHHHHHTTSCC-----------CCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHHHHHHCC-----CCCC-HHHHHHHHH
T ss_conf 99999899999999981899882-------------3899999999997510025-----8998-999999999
No 23
>>1pq1_A Apoptosis regulator BCL-X; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus} (A:)
Probab=47.19 E-value=7.8 Score=18.51 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCC
Q ss_conf 799888878899999999862263002137999982489999999998773571566555506788624453222024
Q gi|254780326|r 263 RLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGK 340 (416)
Q Consensus 263 ~~~~f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~ 340 (416)
......+.|..++.+|-++.-++=++..+-+.+ +...+...=.+|++ -+|....| ||||++-..-
T Consensus 82 ~~~~v~~~L~~~gdele~~~~~~f~~~~~~l~~------~~~~~~~~f~~V~~------elF~dgin-WGRIval~aF 146 (196)
T 1pq1_A 82 PMAAVKQALREAGDEFELRYRRAFSDLTSQLHI------TPGTAYQSFEQVVN------ELFRDGVN-WGRIVAFFSF 146 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGTTHHHHTTC------CTTTHHHHHHHHHH------HHTTTCCC-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCCCHHHHHHHHHH------HHHCCCCC-HHHHHHHHHH
T ss_conf 467999999999999999989999999995288------87507999999999------99648996-8999999999
No 24
>>1mk3_A BCL-W, apoptosis regulator BCL-W; BCL-W protein, apoptotis; NMR {Homo sapiens} (A:)
Probab=45.56 E-value=9.4 Score=17.98 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=14.1
Q ss_pred HHHCCCCCCHHHHHHHHCCC
Q ss_conf 55067886244532220245
Q gi|254780326|r 322 AFASESFGWWGRIVMAVGKS 341 (416)
Q Consensus 322 A~~G~DpN~WGRI~aAiG~s 341 (416)
-+|....| ||||++-..-+
T Consensus 84 eif~dgin-WGRIval~~F~ 102 (178)
T 1mk3_A 84 ELFQGGPN-WGRLVAFFVFG 102 (178)
T ss_dssp HHHTTCCC-SHHHHHHHHHH
T ss_pred HHHCCCCC-HHHHHHHHHHH
T ss_conf 98169996-89999999999
No 25
>>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopterin, MGD, oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} (A:53-145,A:376-477)
Probab=45.02 E-value=20 Score=15.86 Aligned_cols=123 Identities=11% Similarity=-0.065 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC----CHHHHHHHHHHHCCCHHHHHH-----------HHCCCCC
Q ss_conf 9888878899999999862263002137999982489----999999998773571566555-----------5067886
Q gi|254780326|r 265 SLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAA----DCASAKKVALSIANSPLVKTA-----------FASESFG 329 (416)
Q Consensus 265 ~~f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~----~~~~A~~ia~sIa~S~LvKtA-----------~~G~DpN 329 (416)
..|++||+++...|.+-+.+.|..+--+..-.-.++. +..-.++..+++..++..-.. .++.+|.
T Consensus 32 isWdeAl~~ia~kl~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (195)
T 1eu1_A 32 VTWDEALDLVARELKRVQESYGPTGTFGGSYGWKSPGRLHNCQVLMRRALNLAGGFVNSSGDISDGGKAVEGAAWLSESG 111 (195)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCGGGEECCCCCCCCCCSSCCHHHHHHHHHHHHTCCBEEESCCCCCC---CC-------C
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 45999999999999999998598489983357786588889999999999864887688988785454430133212124
Q ss_pred C-------HHHHHHHHCCCCC----CCCHHHEEEEECCEEEEECCCCC-CCCCHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 2-------4453222024577----65823349998999987177318-78899999986254877999972689
Q gi|254780326|r 330 W-------WGRIVMAVGKSGV----LVDRDRLSVWFGDVRIANNGEPE-INFSQESVRSIVKKKCVPITVDLQIG 392 (416)
Q Consensus 330 ~-------WGRI~aAiG~sg~----~~d~~~i~i~ig~~~v~~~G~~~-~~~~e~~~~~~~~~~~i~i~idLg~G 392 (416)
. |+......|..-. ..++.+++..+ + ..+.|. .--+.....+.|++-+..|.+|.-.-
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ik~l~----~-~~~Np~~s~p~~~~~~~al~kldl~V~~D~~~t 181 (195)
T 1eu1_A 112 ATSIPCARVVDMLLNPGGEFQFNGATATYPDVKLAY----W-AGGNPFAHHQDRNRMLKAWEKLETFIVQDFQWT 181 (195)
T ss_dssp CSEEEGGGHHHHHHCTTCEEEETTEEEECCCCCEEE----E-ESCCHHHHSSCHHHHHHHGGGCSEEEEEESBCC
T ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEE----E-ECCCHHCCCCCHHHHHHHHHCCCCEEEEEEECC
T ss_conf 455745443222307751466544433478828999----9-488833047589999998706981999973057
No 26
>>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} (A:1-121,A:185-308)
Probab=37.18 E-value=11 Score=17.50 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=13.5
Q ss_pred HHHHHCCCCCCCEEEEE
Q ss_conf 87643156575224668
Q gi|254780326|r 156 AKAMMTTDRYAKVAVRT 172 (416)
Q Consensus 156 A~AImTTDt~pK~~~~~ 172 (416)
--+++|||+|||..-.+
T Consensus 112 ~V~LvTTDgF~dILIVE 128 (245)
T 1sq5_A 112 RVELITTDGFPDILILE 128 (245)
T ss_dssp CEEEEEGGGGCCEEEEE
T ss_pred CEEEEECCEECCEEEEC
T ss_conf 53998211359979972
No 27
>>1jqk_A CODH, carbon monoxide dehydrogenase; rossmann fold, oxidoreductase; 2.80A {Rhodospirillum rubrum} (A:240-252,A:400-639)
Probab=33.03 E-value=30 Score=14.65 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=37.0
Q ss_pred HHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCH
Q ss_conf 87235880299993787223414798999999999998764987330887114310224320
Q gi|254780326|r 72 GNLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDV 133 (416)
Q Consensus 72 ~~l~~~~~raivvNSGnANA~TG~~G~~~a~~~~~~~a~~l~~~~~~Vl~~STGVIG~~Lp~ 133 (416)
+.+..|++|+++.--||.|.-.|++- .-.++++.+ .++++|+.+||==..++-+
T Consensus 49 d~I~~G~IrGvv~ivGC~n~k~~~~~--~~~~iakeL------ik~dvlVlt~GC~a~~~~k 102 (253)
T 1jqk_A 49 DNVVNGNIQGIVLFVGCNTTKVQQDS--AYVDLAKSL------AKRNVLVLATGCAAGAFAK 102 (253)
T ss_dssp HHHHHTSSCEEEEECCCCCTTSCTTH--HHHHHHHHH------HHTTEEEEEEHHHHHHHHH
T ss_pred HHHHCCCCCEEEEEECCCCCCCCCCC--HHHHHHHHH------HHCCEEEECCCHHHHHHHH
T ss_conf 99974987628999658999988730--899999987------2089899835067778875
No 28
>>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A* (A:219-379)
Probab=31.10 E-value=25 Score=15.16 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=9.5
Q ss_pred CCCCCEEEEECCCCCCCCCC
Q ss_conf 98733088711431022432
Q gi|254780326|r 113 PCKEEEVYVASTGIIGEFLD 132 (416)
Q Consensus 113 ~~~~~~Vl~~STGVIG~~Lp 132 (416)
+.+++++++-.||--|||+.
T Consensus 84 ~~~~~~vvii~TGsqgEp~a 103 (161)
T 3bk2_A 84 DLPDHQVLILATGSQGQPXS 103 (161)
T ss_dssp TSCGGGEEEEECCTTSCSHH
T ss_pred CCCCCCCCEECCCCCCCHHH
T ss_conf 15633222102334466377
No 29
>>1uty_A Non-structural protein 2; viral protein, RNA binding protein; 2.4A {Bluetongue virus} (A:)
Probab=28.69 E-value=22 Score=15.53 Aligned_cols=38 Identities=29% Similarity=0.483 Sum_probs=23.7
Q ss_pred HCCCCCCCEEEE---------EEEECCCEEE-EEEEEECCHHCCCCCC
Q ss_conf 315657522466---------8875696289-9998502000243452
Q gi|254780326|r 160 MTTDRYAKVAVR---------TVDIDGIRVT-INGLAKGAGMIAPDMA 197 (416)
Q Consensus 160 mTTDt~pK~~~~---------~~~i~g~~v~-i~GiaKGsGMI~PnMA 197 (416)
.||+..++..+. .+.++|..+- -.-++||+||+.|-|.
T Consensus 86 ~t~eRWeewkFE~v~~~p~~~ri~i~g~~~d~EIK~~Kg~g~V~PYTr 133 (187)
T 1uty_A 86 ATTERWEEWKFEGVSVTPMATRVQYNGVMVDAEIKYCKGMGIVQPYMR 133 (187)
T ss_dssp EESSCCTTBCCEEEECEEEEEEEEETTEEEEEEEEEEECCCCSCTTCB
T ss_pred EECCCHHCCEEEEECCCCCEEEEEECCEEEEEEEEEEEECCCCCCCCC
T ss_conf 011200011556611314269998876743336887330133388562
No 30
>>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} (A:28-142,A:191-283,A:453-609)
Probab=26.67 E-value=38 Score=13.95 Aligned_cols=185 Identities=14% Similarity=0.103 Sum_probs=103.3
Q ss_pred CCCHHHHHHHHC-CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHH------H
Q ss_conf 343488888723-588029999378722341479899999999999876498733088711431022432022------2
Q gi|254780326|r 64 SAPVDFCKGNLS-HGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVAL------F 136 (416)
Q Consensus 64 AAPV~~~k~~l~-~~~~raivvNSGnANA~TG~~G~~~a~~~~~~~a~~l~~~~~~Vl~~STGVIG~~Lp~~k------i 136 (416)
-+||..-.+... -...+++..|.--.-++.|.-+-+..+.+.+.+|+.||++|-++-.----.=|..-+... .
T Consensus 103 ~~~v~~~~~A~~~~~~~~av~Tn~~~~ga~Rg~G~pqa~E~~id~lA~~lg~Dp~e~R~kN~~~~g~~~~~g~~~~~~~~ 182 (365)
T 1rm6_A 103 LPAYMTPKAAMKAMELNATLAEYDPVRDMLTLNTTTQVPYYVHLKVAACLQMDSARIRVIKPFLGGGFGARTEALHFEII 182 (365)
T ss_dssp CCCCCSHHHHHSTSSCCEEEEEEETTTTEEEEEECCSCHHHHHHHHHHHHTCCGGGEEEECCBCCCCTTTTSSCCHHHHH
T ss_pred CCCCCCHHHHHHCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHCCCCCCCHHHH
T ss_conf 88768999995184554248998403430467235677188887654431114541499703332122055555516666
Q ss_pred HHHCCCCCCCCCHH-HHHHHHHHHHCCCCCCCEEEEEEEE--CCC-EEEEEEEEECCHHCCCCCCEEEEEEEECCCCCHH
Q ss_conf 21001222345832-2688887643156575224668875--696-2899998502000243452258899965643999
Q gi|254780326|r 137 DGVLSKMLCDATDD-AWLDSAKAMMTTDRYAKVAVRTVDI--DGI-RVTINGLAKGAGMIAPDMATTLAFVVTDINISPA 212 (416)
Q Consensus 137 ~~~i~~l~~~l~~~-~~~~aA~AImTTDt~pK~~~~~~~i--~g~-~v~i~GiaKGsGMI~PnMATML~fi~TDa~i~~~ 212 (416)
.+.+.......... .....--++.......-.....+.+ +|. .+..++.--|-| ...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~i~~DG~v~v~~g~~e~GQG-------------------~~T 243 (365)
T 1rm6_A 183 AGLLARKAKGTVRLLQTREETFIAHRHWTGEPHATVNLKLDFDGGITLLTGAADIGQG-------------------SNT 243 (365)
T ss_dssp HHHHHHHHTSEEEEECCHHHHHHHCCSCCCCCSEEEEEEECTTCCEEEEECCCCSSSC-------------------HHH
T ss_pred HHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCC-------------------CHH
T ss_conf 6666621699844201100223323544567520021244589629999587556763-------------------044
Q ss_pred HHHHHHHHHHCCCCCEEEE-CCCCCC--CCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999860055541431-676564--4228996326534677776888777799888878899999999862
Q gi|254780326|r 213 VLQNILSEGAEYSFNSITV-DGDTST--SDTLLLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKDLALQVV 283 (416)
Q Consensus 213 ~L~~~L~~~v~~SFN~IsV-DGDtST--NDtv~l~AnG~~~~~~~~i~~~~~~~~~~f~~aL~~v~~~LA~~Iv 283 (416)
.+.++..+.......+|+| -|||+. |+. |. ..|+.-..+..++...|..|-+++.
T Consensus 244 ~~aqiaAe~Lgi~~d~V~v~~~DT~~~p~~~------~t----------~gSr~t~~~g~Av~~Aa~~lr~~L~ 301 (365)
T 1rm6_A 244 MASQVAAEVLGVRLSRIRVISADSALTPKDN------GS----------YSSRVTFMVGNASISAAEELKGVLV 301 (365)
T ss_dssp HHHHHHHHHHTCCGGGEEEEESBTTTSCCCC------CS----------CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC------CC----------CCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 6777788750875322431024666430246------55----------4554112566788888776655456
No 31
>>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, PSI, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} (A:68-280)
Probab=26.25 E-value=39 Score=13.90 Aligned_cols=43 Identities=7% Similarity=0.054 Sum_probs=26.9
Q ss_pred EEEEEEECCHHCCCCCCEEEE--EEEECCCCCHHHHHHHHHHHHC
Q ss_conf 999985020002434522588--9996564399999999998600
Q gi|254780326|r 181 TINGLAKGAGMIAPDMATTLA--FVVTDINISPAVLQNILSEGAE 223 (416)
Q Consensus 181 ~i~GiaKGsGMI~PnMATML~--fi~TDa~i~~~~L~~~L~~~v~ 223 (416)
+|.-+.=|+|-..--||-.+. .-.|-.+++++.++.+-++..+
T Consensus 35 ~VLDiGcGtG~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~ 79 (213)
T 1i9g_A 35 RVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSG 79 (213)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 899952730499999999727995699996999999999998887
No 32
>>1gnl_A HCP, hybrid cluster protein; anaerobic desulfovibrio desulfuricans, iron anomalous; HET: FSO; 1.25A {Desulfovibrio desulfuricans} (A:219-230,A:358-544)
Probab=25.91 E-value=39 Score=13.86 Aligned_cols=64 Identities=9% Similarity=0.081 Sum_probs=46.2
Q ss_pred HHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHH--HHHCCCCCC
Q ss_conf 87235880299993787223414798999999999998764987330887114310224320222--210012223
Q gi|254780326|r 72 GNLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALF--DGVLSKMLC 145 (416)
Q Consensus 72 ~~l~~~~~raivvNSGnANA~TG~~G~~~a~~~~~~~a~~l~~~~~~Vl~~STGVIG~~Lp~~ki--~~~i~~l~~ 145 (416)
+.++.|++|+++.--||-|.-.++.=++.+++. -++++|+.+||==..++-..-+ ..+||.++.
T Consensus 38 d~I~~G~IrGv~~ivGC~n~~~~~~~~~~~kel----------i~~d~lVlt~GC~~~~~~k~gl~~~~giPpvL~ 103 (199)
T 1gnl_A 38 DAVKSGAIKKFVVMAGCDGRAKSRSYYTDFAEG----------LPKDTVILTAGCAKYRYNKLNLGDIGGIPRVLD 103 (199)
T ss_dssp HHHHTTSCCEEEECCBCCCSCGGGHHHHHHHHH----------SCTTEEEEECSGGGGGTTTSCCCEETTEESEEE
T ss_pred HHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHH----------CCCCEEEEEECCCCEECCCCCCCCCCCCCCCCC
T ss_conf 886157614799970467885410578888760----------897608998513431304556555568520023
No 33
>>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=25.59 E-value=40 Score=13.82 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=36.6
Q ss_pred HHEEEEECCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 334999899998717731878899999986254877999972689
Q gi|254780326|r 348 DRLSVWFGDVRIANNGEPEINFSQESVRSIVKKKCVPITVDLQIG 392 (416)
Q Consensus 348 ~~i~i~ig~~~v~~~G~~~~~~~e~~~~~~~~~~~i~i~idLg~G 392 (416)
++-.|..||+.+--||.+..+.+...+.+.+++..+.+.+....-
T Consensus 58 ~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~l~v~r~~~ 102 (114)
T 2d8i_A 58 SKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYPE 102 (114)
T ss_dssp HHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTSSEEEEEEEECCC
T ss_pred CCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEECC
T ss_conf 228787899999899999999999999999847997699998278
No 34
>>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, monomer, lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} (A:56-120,A:242-305,A:389-477)
Probab=25.55 E-value=25 Score=15.13 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=6.5
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 439999999999860
Q gi|254780326|r 208 NISPAVLQNILSEGA 222 (416)
Q Consensus 208 ~i~~~~L~~~L~~~v 222 (416)
.|+.+.|+.++.++-
T Consensus 19 ~i~~~~L~~ii~~ay 33 (218)
T 1kl7_A 19 EIPDADLKDLIKRSY 33 (218)
T ss_dssp TSCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 299999999999997
No 35
>>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} (A:)
Probab=23.73 E-value=28 Score=14.80 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCC
Q ss_conf 99999998773571566555506788624453222024
Q gi|254780326|r 303 CASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGK 340 (416)
Q Consensus 303 ~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~ 340 (416)
+.+-.+.-++++. +--.+||+|-++.|++|.
T Consensus 13 e~EL~klh~a~~s-------lpkh~~~fW~~Va~~Vgt 43 (73)
T 1wgx_A 13 EKELQKLHCAFAS-------LPKHKPGFWSEVAAAVGS 43 (73)
T ss_dssp HHHHHHHHHHHHH-------SCSSSSSHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH-------CCCCCCCCHHHHHHHHCC
T ss_conf 9999999999983-------588777509999999835
No 36
>>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A* (A:138-218,A:380-432)
Probab=23.61 E-value=43 Score=13.58 Aligned_cols=65 Identities=12% Similarity=0.170 Sum_probs=42.3
Q ss_pred CCCCCCCCCHHHHH-HHHCCCCCEEEEEECCCCCC-CCCHHHHHHHHHHHHH---------------------HHHHCCC
Q ss_conf 25778534348888-87235880299993787223-4147989999999999---------------------9876498
Q gi|254780326|r 58 TRSSCPSAPVDFCK-GNLSHGIARALIVNSGIANA-FTGKRGRDTVRFIAKA---------------------VSELIPC 114 (416)
Q Consensus 58 T~N~~~AAPV~~~k-~~l~~~~~raivvNSGnANA-~TG~~G~~~a~~~~~~---------------------~a~~l~~ 114 (416)
.++...+.+-.+.| ..+.+..+.+++..|.||+- .-|....++.+.|.++ +|+..|+
T Consensus 46 d~~p~~g~~~d~~~l~~~g~~gvd~Li~dST~a~~~vSgHa~~eelk~m~~~~~Pk~~iPvhGe~r~l~~~~~~A~~~G~ 125 (134)
T 3bk2_A 46 DPTPIDGKVSHLAKVAQAGAEGVLLLIADATNAERPASGHASQEELKLILNLTTPRFFLPWHGEVRHQXNFKWLAESXSR 125 (134)
T ss_dssp CSSCTTSCCCCCHHHHHHHHHCCSEEEEECTTTTCCCCSSCCHHHHHHHHHHHCCSEEEEESBCHHHHHHHHHHHHTSSS
T ss_pred CCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCC
T ss_conf 66766545568888742266675389835667678956766589999999852987799985236889999999998098
Q ss_pred CCCEEEEE
Q ss_conf 73308871
Q gi|254780326|r 115 KEEEVYVA 122 (416)
Q Consensus 115 ~~~~Vl~~ 122 (416)
++++|++.
T Consensus 126 ~~~~i~i~ 133 (134)
T 3bk2_A 126 PPEKTLIG 133 (134)
T ss_dssp CCSEECCC
T ss_pred CCCCCEEE
T ss_conf 86552553
No 37
>>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} (A:251-382)
Probab=23.12 E-value=34 Score=14.32 Aligned_cols=23 Identities=35% Similarity=0.232 Sum_probs=18.4
Q ss_pred CCCEEEEECCCCCCCCCCHHHHH
Q ss_conf 73308871143102243202222
Q gi|254780326|r 115 KEEEVYVASTGIIGEFLDVALFD 137 (416)
Q Consensus 115 ~~~~Vl~~STGVIG~~Lp~~ki~ 137 (416)
..+.|++||||.=--.+|-|||.
T Consensus 107 ~e~~V~~csTgtg~~~lpqeKI~ 129 (132)
T 1xks_A 107 NESAVYVCSTGTGKFSLPQEKIV 129 (132)
T ss_dssp CSSEEEEEECTTCTTCCCCEEEE
T ss_pred ECCEEEEEECCCCCCCCHHHCCC
T ss_conf 69999999788888888644540
No 38
>>1su8_A CODH 2, carbon monoxide dehydrogenase 2; nickel, cluster C, oxidoreductase; HET: NFS; 1.10A {Carboxydothermus hydrogenoformans} (A:409-636)
Probab=22.46 E-value=46 Score=13.43 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC
Q ss_conf 78534348888872358802999937872234147989999999999987649873308871143102243
Q gi|254780326|r 61 SCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFL 131 (416)
Q Consensus 61 ~~~AAPV~~~k~~l~~~~~raivvNSGnANA~TG~~G~~~a~~~~~~~a~~l~~~~~~Vl~~STGVIG~~L 131 (416)
...+++.+. +.+..|++|+++.--||.|.-.+++- ...++++.+ .++++|+.+||==-.++
T Consensus 13 ~~~~~~~l~--d~I~~G~IrGvv~ivGC~n~~~~~~~--~~~~iakeL------ik~d~lVlttGC~a~~~ 73 (228)
T 1su8_A 13 ANDPLKPLI--DNVVNGNIRGVCLFAGCNNVKVPQDQ--NFTTIARKL------LKQNVLVVATGCGAGAL 73 (228)
T ss_dssp TTCTHHHHH--HHHHHTSSCCEEEECSCCCTTSCBTH--HHHHHHHHH------HHTTCEEEEEHHHHHHH
T ss_pred CCCCCHHHH--HHHHCCCCCEEEEEECCCCCCCCCCC--HHHHHHHHH------CCCCEEEECCCHHHHHH
T ss_conf 445407899--99974998727999648998888853--399999987------45897998250677788
No 39
>>2v4j_B Sulfite reductase, dissimilatory-type subunit beta; dissimilatory sulfite reductase, complex, siroheme, oxidoreductase; HET: SRM; 2.10A {Desulfovibrio vulgaris} (B:136-209,B:276-381)
Probab=22.42 E-value=46 Score=13.42 Aligned_cols=35 Identities=6% Similarity=-0.007 Sum_probs=22.5
Q ss_pred CCHHC--CCCCCEEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 20002--434522588999656439999999999860
Q gi|254780326|r 188 GAGMI--APDMATTLAFVVTDINISPAVLQNILSEGA 222 (416)
Q Consensus 188 GsGMI--~PnMATML~fi~TDa~i~~~~L~~~L~~~v 222 (416)
|.|++ +|.||++|..+...-.+..+.+..++....
T Consensus 87 ~~G~~~~~p~~a~~l~~fi~~e~~~~~~~~~ii~~~~ 123 (180)
T 2v4j_B 87 KVSNRISMPKFSKVVVAYIPNEPPRWPSLTKTIKHII 123 (180)
T ss_dssp BCCCSSSCCBCCEEEEEEEECCTTTCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 1377667784345440145678888999999999999
No 40
>>2hfx_A Carbonic anhydrase 3; proton shuttle, HCA III, proton transfer, lyase; 1.70A {Homo sapiens} PDB: 2hfw_A 1z93_A 2hfy_A 1z97_A 1flj_A* (A:)
Probab=21.08 E-value=49 Score=13.25 Aligned_cols=16 Identities=6% Similarity=0.004 Sum_probs=5.1
Q ss_pred CHHCCCCCCEEEEEEE
Q ss_conf 0002434522588999
Q gi|254780326|r 189 AGMIAPDMATTLAFVV 204 (416)
Q Consensus 189 sGMI~PnMATML~fi~ 204 (416)
|----|.--+..=+|+
T Consensus 196 SLTtPPC~E~V~W~V~ 211 (260)
T 2hfx_A 196 SFTTPPCEECIVWLLL 211 (260)
T ss_dssp CCSSTTCCSCEEEEEE
T ss_pred CCCCCCCCCCEEEEEE
T ss_conf 8768998787789993
Done!