Query gi|254780326|ref|YP_003064739.1| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 416
No_of_seqs 128 out of 1654
Neff 5.1
Searched_HMMs 23785
Date Mon May 30 08:15:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780326.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vz6_A Ornithine acetyl-transf 100.0 0 0 1109.0 34.4 384 16-416 5-393 (393)
2 1vra_B Arginine biosynthesis b 100.0 0 0 619.5 22.8 214 198-416 1-215 (215)
3 3it4_B Arginine biosynthesis b 100.0 0 0 593.5 19.7 205 198-416 1-205 (205)
4 2v4i_B Glutamate N-acetyltrans 100.0 0 0 591.9 19.3 208 198-416 1-213 (213)
5 1vra_A Arginine biosynthesis b 100.0 0 0 480.2 16.1 187 10-197 21-208 (208)
6 2v4i_A Glutamate N-acetyltrans 100.0 0 0 473.0 17.1 172 22-197 2-173 (173)
7 3it4_A Arginine biosynthesis b 100.0 0 0 467.4 16.1 178 17-197 14-199 (199)
8 1b65_A DMPA, protein (aminopep 92.9 0.41 1.7E-05 25.9 7.3 281 12-337 22-358 (375)
9 2drh_A PH0078 protein, 361AA l 89.2 0.74 3.1E-05 24.2 5.6 222 12-249 14-289 (361)
10 1ohu_A Apoptosis regulator CED 86.1 0.66 2.8E-05 24.6 3.9 56 266-340 55-110 (175)
11 2kua_A BCL-2-like protein 10; 79.0 2.4 0.0001 20.9 4.5 17 326-343 88-104 (170)
12 2vof_A BCL-2-related protein A 75.8 1.3 5.5E-05 22.6 2.4 37 301-343 67-103 (157)
13 3fdl_A Apoptosis regulator BCL 74.7 2.6 0.00011 20.7 3.6 52 267-342 46-97 (158)
14 2a5y_A Apoptosis regulator CED 72.4 2.3 9.6E-05 21.0 2.9 56 267-341 76-131 (204)
15 1g5m_A Protein (apoptosis regu 71.6 3.4 0.00014 19.9 3.7 63 267-342 52-114 (166)
16 2wh6_A Early antigen protein R 71.2 1.4 6.1E-05 22.3 1.7 16 322-338 102-118 (173)
17 1k3k_A Functional anti-apoptot 60.6 2.9 0.00012 20.3 1.6 18 323-341 76-94 (158)
18 2ims_A Apoptosis regulator BAK 58.4 4.6 0.00019 19.0 2.3 34 302-342 88-121 (171)
19 1r2d_A Apoptosis regulator BCL 55.7 2.4 0.0001 20.9 0.4 65 264-341 83-147 (218)
20 2w3l_A BCL2-XL, apoptosis regu 54.7 3.5 0.00015 19.8 1.2 31 305-342 63-93 (144)
21 1mk3_A BCL-W, apoptosis regula 52.2 3.7 0.00015 19.7 0.9 19 323-342 85-103 (178)
22 2nl9_A Fusion protein consisti 49.3 6.2 0.00026 18.2 1.7 17 325-342 86-102 (157)
23 3ilc_A BCL-2-like protein 1; a 45.6 3.9 0.00017 19.5 0.2 63 265-340 85-147 (197)
24 1f16_A Protein (apoptosis regu 42.1 6.4 0.00027 18.1 0.9 66 260-342 52-118 (192)
25 1mp9_A Tata-binding protein; t 35.7 19 0.0008 14.9 3.3 108 24-140 12-128 (198)
26 1svv_A Threonine aldolase; str 34.4 20 0.00084 14.8 2.5 29 99-127 49-77 (359)
27 1qys_A TOP7; alpha-beta, novel 34.3 20 0.00084 14.8 6.0 68 265-365 27-94 (106)
28 3cf4_A Acetyl-COA decarbonylas 33.7 21 0.00086 14.7 2.8 14 40-53 73-86 (807)
29 1b7y_A Phers, protein (phenyla 32.5 5.5 0.00023 18.5 -0.7 13 128-140 98-110 (350)
30 2eeg_A PDZ and LIM domain prot 30.5 23 0.00097 14.4 2.8 44 351-394 49-92 (94)
31 1x45_A Amyloid beta (A4) precu 28.8 25 0.001 14.2 3.4 45 351-395 51-97 (98)
32 3eik_A Tata-box-binding protei 28.6 25 0.001 14.2 3.1 65 39-112 57-121 (218)
33 1uty_A Non-structural protein 27.7 16 0.00069 15.4 1.0 107 79-197 9-133 (187)
34 3kzd_A TIAM-1, T-lymphoma inva 24.2 30 0.0013 13.7 2.7 38 352-389 53-90 (94)
35 2d8i_A T-cell lymphoma invasio 23.9 30 0.0013 13.6 2.7 38 352-389 62-99 (114)
36 1wi2_A Riken cDNA 2700099C19; 23.4 31 0.0013 13.5 4.3 45 351-395 58-103 (104)
37 1boo_A Protein (N-4 cytosine-s 22.6 24 0.001 14.3 1.1 32 380-411 250-290 (323)
38 1p0z_A Sensor kinase CITA; tra 22.0 33 0.0014 13.4 2.3 26 304-329 10-35 (131)
39 1ais_A TBP, protein (tata-bind 21.8 33 0.0014 13.3 3.1 107 26-141 10-125 (182)
40 3lcv_B Sisomicin-gentamicin re 20.3 34 0.0014 13.3 1.5 53 181-235 135-190 (281)
No 1
>1vz6_A Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine, N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces clavuligerus} SCOP: d.154.1.2 PDB: 1vz7_A 1vz8_A
Probab=100.00 E-value=0 Score=1109.00 Aligned_cols=384 Identities=35% Similarity=0.538 Sum_probs=366.9
Q ss_pred CCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCH
Q ss_conf 89878747479999980310188946999994899869998325778534348888872358802999937872234147
Q gi|254780326|r 16 SPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGK 95 (416)
Q Consensus 16 ~p~l~~i~Gf~~~~~~aGiK~~~r~DL~li~~~~pa~~AgvFT~N~~~AAPV~~~k~~l~~~~~raivvNSGnANA~TG~ 95 (416)
.|.+| +||++++++||||+++|+||+||+++.||++|||||+|+|+||||+|||++++++++|+|||||||||||||+
T Consensus 5 ~~~~P--~Gf~~~~~~aGiK~~gr~Dlali~s~~p~~~AgvFT~N~~~AAPV~~~~~~l~~~~~ravvvNSGnANA~TG~ 82 (393)
T 1vz6_A 5 TPKTP--RGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGL 82 (393)
T ss_dssp ---CC--TTEEEEEECCCSSTTCCCCEEEEEESSCCEEEEEECCCTTCCHHHHHHHHHTTTSBCCEEEEEEEECCCSCHH
T ss_pred CCCCC--CCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCEECCCHHHHHHHHCCCCEEEEEEECCCCCCCCH
T ss_conf 98999--8679999994245799985899996899769999625875305849989975048845999960742155578
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf 98999999999998764987330887114310224320222210012223458322688887643156575224668875
Q gi|254780326|r 96 RGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDI 175 (416)
Q Consensus 96 ~G~~~a~~~~~~~a~~l~~~~~~Vl~~STGVIG~~Lp~~ki~~~i~~l~~~l~~~~~~~aA~AImTTDt~pK~~~~~~~i 175 (416)
+|++|+++|++.+|+.|+|++++||++||||||+||||++|+++||++..++++++|.+||+||||||||||... +
T Consensus 83 ~G~~~a~~~~~~~a~~l~~~~~~Vlv~STGVIG~~Lp~~~i~~~i~~~~~~l~~~~~~~aA~AImTTDt~pK~~~----~ 158 (393)
T 1vz6_A 83 EGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVR----V 158 (393)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEEEEESSCCCCHHHHHHHHTTCCCCSSSBCHHHHHHHTCSSCSSCEEEE----E
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHEEEECCCHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEE----E
T ss_conf 899999999999999849994037884030213658678999987654304586179999988856785057899----9
Q ss_pred CCCEEEEEEEEECCHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 69628999985020002434522588999656439999999999860055541431676564422899632653467777
Q gi|254780326|r 176 DGIRVTINGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAP 255 (416)
Q Consensus 176 ~g~~v~i~GiaKGsGMI~PnMATML~fi~TDa~i~~~~L~~~L~~~v~~SFN~IsVDGDtSTNDtv~l~AnG~~~~~~~~ 255 (416)
+++.++|.|||||||||||||||||+||||||+|+++.||++|+++|++|||||||||||||||||++||||+++
T Consensus 159 ~~~~~~i~GiaKGsGMI~PnMATML~fi~TDa~i~~~~L~~~L~~av~~SFN~IsVDGDtSTNDtv~llAnG~~~----- 233 (393)
T 1vz6_A 159 SVGGATLVGIAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAG----- 233 (393)
T ss_dssp EETTEEEEEEEECSSSCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHTGGGBCSSSCCCSSCEEEEEEEEEEE-----
T ss_pred EECCCEEEEEEECCCCCCCCHHHEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCC-----
T ss_conf 610437999973253458753114788997466798999999998776123637756887777589998338877-----
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHH
Q ss_conf 68887777998888788999999998622630021379999824899999999987735715665555067886244532
Q gi|254780326|r 256 ITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIV 335 (416)
Q Consensus 256 i~~~~~~~~~~f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~ 335 (416)
++++.+|+++|.++|++||+|||||||||||||+|+|+||+|+.+|++|||+|+||||||||+||+||| ||||+
T Consensus 234 -----~~~~~~f~~aL~~v~~~LA~~Iv~DGEGATKli~v~V~gA~s~~~A~~vA~sIa~S~LVKTAi~G~DpN-WGRI~ 307 (393)
T 1vz6_A 234 -----EVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPN-WGRVA 307 (393)
T ss_dssp -----ECCHHHHHHHHHHHHHHHHHHHHHTCTTCSSEEEEEEEEESSHHHHHHHHHHHHTCHHHHHHHHTTCCC-HHHHH
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCC-HHHHH
T ss_conf -----532899999999999999999752622043379999915899999999999975488899998376998-79999
Q ss_pred HHHCCCC--CCCCHHHEEEEECCEEEEECCCC---CCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCHHHEEC
Q ss_conf 2202457--76582334999899998717731---878899999986254877999972689812899954587546001
Q gi|254780326|r 336 MAVGKSG--VLVDRDRLSVWFGDVRIANNGEP---EINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHF 410 (416)
Q Consensus 336 aAiG~sg--~~~d~~~i~i~ig~~~v~~~G~~---~~~~~e~~~~~~~~~~~i~i~idLg~G~~~~t~~tcDLt~~YV~i 410 (416)
||+||++ ++|||++++|+||+++|+++|.+ ..+|+|++++++|+++||.|.||||.|++++++||||||||||+|
T Consensus 308 ~AiG~sg~~~~~d~~~v~i~~g~~~v~~~g~~~~~~~~~~e~~~~~~m~~~ei~I~vdL~~G~~~at~wtcDLt~~YV~I 387 (393)
T 1vz6_A 308 MAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRL 387 (393)
T ss_dssp HHHHTCTTCTTCCTTTCEEEETTEEEECC-------CHHHHHHHHHHTTSSEEEEEEECCSSSEEEEEEEECCCHHHHHH
T ss_pred HHHCCCCCCCCCCHHEEEEEECCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCHHHHEE
T ss_conf 77412456677771207999899999962677887735669999987567918999997888821899927698668348
Q ss_pred CCCCCC
Q ss_conf 146579
Q gi|254780326|r 411 NSNVQS 416 (416)
Q Consensus 411 Na~Yrs 416 (416)
||||||
T Consensus 388 Na~YrT 393 (393)
T 1vz6_A 388 NSEYTT 393 (393)
T ss_dssp HHC---
T ss_pred CCCCCC
T ss_conf 775589
No 2
>1vra_B Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}
Probab=100.00 E-value=0 Score=619.52 Aligned_cols=214 Identities=40% Similarity=0.597 Sum_probs=205.2
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 25889996564399999999998600555414316765644228996326534677776888777799888878899999
Q gi|254780326|r 198 TTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKD 277 (416)
Q Consensus 198 TML~fi~TDa~i~~~~L~~~L~~~v~~SFN~IsVDGDtSTNDtv~l~AnG~~~~~~~~i~~~~~~~~~~f~~aL~~v~~~ 277 (416)
|||+||||||+|+++.||++|+++|++|||+|||||||||||||++||||++++ +++ ...++++..|+++|.+||++
T Consensus 1 TML~fi~TDa~i~~~~L~~~L~~av~~SFN~IsVDGDtSTNDtv~llA~G~a~~--~~~-~~~~~~~~~f~~aL~~v~~~ 77 (215)
T 1vra_B 1 TMLSFVTTDANIDHGHLQGALSAITNETFNRITVDGDTSTNDMVVVMASGLAEN--ETL-TPEHPDWANFYKALQLACED 77 (215)
T ss_dssp CCEEEEEECCCCCHHHHHHHHHHHHHHTGGGBCSSSCCCSSCEEEEEECCTTCC--SCC-CTTSTTHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCCC--CCC-CCHHHHHHHHHHHHHHHHHH
T ss_conf 979999976868999999999999983478666779886045689886324468--643-20156899999999999999
Q ss_pred HHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHEEEEECCE
Q ss_conf 99986226300213799998248999999999877357156655550678862445322202457765823349998999
Q gi|254780326|r 278 LALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDV 357 (416)
Q Consensus 278 LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~sg~~~d~~~i~i~ig~~ 357 (416)
||+|||||||||||||+|+|+||+|+.+|+++||+|+||||||||+||+||| ||||+||+|+++++|||++++|+||++
T Consensus 78 LA~~Iv~DGEGAtK~i~v~V~gA~s~~~A~~iA~sIanS~LVKTAi~G~DpN-WGRI~~AiG~s~~~~d~~~i~i~ig~~ 156 (215)
T 1vra_B 78 LAKQIARDGEGATKLIEVEVTGAANDQEAGMVAKQIVGSDLVKTAIYGADAN-WGRIICAIGYSGCEVNQETIDIAIGPI 156 (215)
T ss_dssp HHHHHHHTSTTCSCEEEEEEEEESSHHHHHHHHHHHHTCHHHHHHHHTTCCC-HHHHHHHHHHSSSCCCTTSCEEEETTE
T ss_pred HHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCC-HHHHHHHHCCCCCCCCCCCCEEEECCE
T ss_conf 9999640578772799999931899999999999974279999998531888-899887753465431234304896678
Q ss_pred EEEECCCCCCCCCHHHHHHHHCC-CCEEEEEECCCCCEEEEEEECCCCHHHEECCCCCCC
Q ss_conf 98717731878899999986254-877999972689812899954587546001146579
Q gi|254780326|r 358 RIANNGEPEINFSQESVRSIVKK-KCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSNVQS 416 (416)
Q Consensus 358 ~v~~~G~~~~~~~e~~~~~~~~~-~~i~i~idLg~G~~~~t~~tcDLt~~YV~iNa~Yrs 416 (416)
+|+++|.| .+|+|+.+.++|++ ++|.|.||||.|++++++||||||||||+|||||||
T Consensus 157 ~v~~~g~~-~~~~e~~~~~~~~~~~ei~I~idL~~G~~~~t~wtcDLt~eYV~INa~YrT 215 (215)
T 1vra_B 157 VTLKQSEP-TGFSEEEATAYLKEADPVKISVNLHIGNGTGKAWGCDLTYDYVRINAGYRT 215 (215)
T ss_dssp EEEETTEE-CCCCHHHHHHHHHHCSSEEEEEECCSSSEEEEEEEECCCHHHHHHHTTC--
T ss_pred EEEECCCC-CCCCHHHHHHHHHCCCEEEEEEEECCCCCCEEEEECCCCHHHHEECCCCCC
T ss_conf 99867836-887789999997267817999997886860899958798538437786579
No 3
>3it4_B Arginine biosynthesis bifunctional protein ARGJ beta chain; ornithine acetyltransferase, structural genomics; 1.70A {Mycobacterium tuberculosis} PDB: 3it6_B
Probab=100.00 E-value=0 Score=593.51 Aligned_cols=205 Identities=34% Similarity=0.467 Sum_probs=194.9
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 25889996564399999999998600555414316765644228996326534677776888777799888878899999
Q gi|254780326|r 198 TTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKD 277 (416)
Q Consensus 198 TML~fi~TDa~i~~~~L~~~L~~~v~~SFN~IsVDGDtSTNDtv~l~AnG~~~~~~~~i~~~~~~~~~~f~~aL~~v~~~ 277 (416)
||||||||||+|+++.||++|+++|++|||+|||||||||||||++||||+++. ++...+|+++|.+||++
T Consensus 1 TML~fi~TDa~i~~~~L~~~l~~av~~SFN~IsVDGDtSTNDtvlllAnG~s~~---------~~~~~~f~~al~~v~~~ 71 (205)
T 3it4_B 1 TMLCVLTTDAAAEPAALERALRRAAAATFDRLDIDGSCSTNDTVLLLSSGASEI---------PPAQADLDEAVLRVCDD 71 (205)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTGGGBCSSSCCCSCCEEEEEECCTTCC---------CCCHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCCC---------CCCHHHHHHHHHHHHHH
T ss_conf 979999966868999999999999983478566778888420676220578789---------95389999999999999
Q ss_pred HHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHEEEEECCE
Q ss_conf 99986226300213799998248999999999877357156655550678862445322202457765823349998999
Q gi|254780326|r 278 LALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDV 357 (416)
Q Consensus 278 LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~sg~~~d~~~i~i~ig~~ 357 (416)
||+|||+|||||||||+|+|+||+++.+|+++||+|+||||||||+||+||| ||||+||+|+++++|||++++|+||++
T Consensus 72 LA~~Iv~DGEGatk~i~v~V~gA~s~~~A~~iA~~Ia~S~LVKtAi~G~DpN-WGRIlaAiG~s~~~~~~~~v~i~i~~~ 150 (205)
T 3it4_B 72 LCAQLQADAEGVTKRVTVTVTGAATEDDALVAARQIARDSLVKTALFGSDPN-WGRVLAAVGMAPITLDPDRISVSFNGA 150 (205)
T ss_dssp HHHHHHHTCTTCCCEEEEEEEEESSHHHHHHHHHHHHHCHHHHHHHHTTCCC-HHHHHHHHTTSSSCCCGGGCEEEETTE
T ss_pred HHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCHHHHHHHHCCCCC-HHHHHHCCCCCCCCCCCCCCEEECCCE
T ss_conf 9999873666564699999945876799999999984159999998468998-788644012688642620132412872
Q ss_pred EEEECCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCHHHEECCCCCCC
Q ss_conf 98717731878899999986254877999972689812899954587546001146579
Q gi|254780326|r 358 RIANNGEPEINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSNVQS 416 (416)
Q Consensus 358 ~v~~~G~~~~~~~e~~~~~~~~~~~i~i~idLg~G~~~~t~~tcDLt~~YV~iNa~Yrs 416 (416)
+|+++|.+. ++++ .+.|++++|+|.||||.|++++++||||||||||+|||||||
T Consensus 151 ~v~~~G~~~-~~~~---~~~~~~~~i~I~idL~~G~~~~~~wtcDLs~~YV~INa~Y~t 205 (205)
T 3it4_B 151 AVCVHGVGA-PGAR---EVDLSDADIDITVDLGVGDGQARIRTTDLSHAYVEENSAYSS 205 (205)
T ss_dssp EEEETTEEC-TTGG---GCCCCSSEEEEEEECSSCCEEEEEEEECCCHHHHHHHHC---
T ss_pred EEEECCCCC-CCHH---HHHCCCCEEEEEEEECCCCCEEEEEECCCCHHHHEECCCCCC
T ss_conf 200068689-6256---775276868999997888950899927698417347683479
No 4
>2v4i_B Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_D* 2vzk_B* 2w4n_B*
Probab=100.00 E-value=0 Score=591.94 Aligned_cols=208 Identities=36% Similarity=0.577 Sum_probs=197.3
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 25889996564399999999998600555414316765644228996326534677776888777799888878899999
Q gi|254780326|r 198 TTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKD 277 (416)
Q Consensus 198 TML~fi~TDa~i~~~~L~~~L~~~v~~SFN~IsVDGDtSTNDtv~l~AnG~~~~~~~~i~~~~~~~~~~f~~aL~~v~~~ 277 (416)
.||+||||||+|+++.||++|+++|++|||||||||||||||||++||||+++ .++..+|+++|.++|++
T Consensus 1 ~ML~fi~TDa~i~~~~L~~~L~~av~~SFN~IsVDGDtSTNDtvlllAnG~~~----------~~~~~~f~~aL~~v~~~ 70 (213)
T 2v4i_B 1 ALLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAG----------EVDAGEFEEALHTAALA 70 (213)
T ss_dssp CCEEEEEECCBCCHHHHHHHHHHHHHHTGGGBCSSSCCCSCCEEEEEEECTTC----------BCCHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHCCCCCC----------CCCCHHHHHHHHHHHHH
T ss_conf 90799996786899999999999998357876577888722237786333469----------98726899999999999
Q ss_pred HHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCC--CCCCHHHEEEEEC
Q ss_conf 99986226300213799998248999999999877357156655550678862445322202457--7658233499989
Q gi|254780326|r 278 LALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSG--VLVDRDRLSVWFG 355 (416)
Q Consensus 278 LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~sg--~~~d~~~i~i~ig 355 (416)
||+|||+|||||||||+|+|+||+++.+|+++||+|+||||||||+||+||| ||||+||+|+++ ++|||++++|+||
T Consensus 71 LA~~Iv~DGEGatK~i~v~V~gA~s~~~A~~iAr~Ia~S~LVKTA~~G~DpN-WGRI~~AiG~s~~~~~~d~~~i~i~~g 149 (213)
T 2v4i_B 71 LVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPN-WGRVAMAIGKCSDDTDIDQERVTIRFG 149 (213)
T ss_dssp HHHHHHHSSTTCCCEEEEEEEEESSHHHHHHHHHHHHTCHHHHHHHHTTCCC-HHHHHHHHHTCTTCTTCCTTTCEEEET
T ss_pred HHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCC-HHHHHHHHCCCCCCCCCCCHHHEEECC
T ss_conf 9999873647584599999727999999999999816784899987356987-889999853023455556044214318
Q ss_pred CEEEEECCCC---CCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCHHHEECCCCCCC
Q ss_conf 9998717731---878899999986254877999972689812899954587546001146579
Q gi|254780326|r 356 DVRIANNGEP---EINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSNVQS 416 (416)
Q Consensus 356 ~~~v~~~G~~---~~~~~e~~~~~~~~~~~i~i~idLg~G~~~~t~~tcDLt~~YV~iNa~Yrs 416 (416)
+++++++|.+ ..+++++++.++|+++||+|.||||.|++++++||||||||||+|||||||
T Consensus 150 ~~~v~~~g~~~~~~~~~~~~~~~~~m~~~ei~I~vdLg~G~~~~~~wtcDLt~eYV~INa~Y~T 213 (213)
T 2v4i_B 150 EVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSEYTT 213 (213)
T ss_dssp TEEEECC-------CHHHHHHHHHHHHSSEEEEEEECCSSSEEEEEEEECCCHHHHHHHHC---
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCCCHHEECCCCCC
T ss_conf 7788631245765316669999998547858999997888820899948698307337785479
No 5
>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}
Probab=100.00 E-value=0 Score=480.22 Aligned_cols=187 Identities=34% Similarity=0.458 Sum_probs=178.2
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHC-CCCCEEEEEECCC
Q ss_conf 768877898787474799999803101889469999948998699983257785343488888723-5880299993787
Q gi|254780326|r 10 MLQSHVSPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLS-HGIARALIVNSGI 88 (416)
Q Consensus 10 ~~~~~~~p~l~~i~Gf~~~~~~aGiK~~~r~DL~li~~~~pa~~AgvFT~N~~~AAPV~~~k~~l~-~~~~raivvNSGn 88 (416)
++.+.....+..++||++++++||||++ |+||+||+++.||.+|||||||+|+||||+|||++|+ ++++|||||||||
T Consensus 21 ~~~~i~~g~vt~p~GF~~~gi~aGiK~~-r~DL~Li~~~~~~~~AgVFT~N~~~AAPV~~~r~~l~~~~~~raiivNSGN 99 (208)
T 1vra_A 21 NVLKLETGSVTSAKGFSAVGIHTGVKRK-RKDLGAIVCEVPASSAAVYTLNKVQAAPLKVTQESIAVEGKLQAMIVNSGI 99 (208)
T ss_dssp CCEECTTCCGGGSTTEEEEEECCSSSSS-SCCEEEEEEEEEEEEEEEEBCCSSCCHHHHHHHHHHHHHSEEEEEEEEEEE
T ss_pred CEEEECCCCEECCCCEEEEEEEECCCCC-CCCEEEEEECCCCEEEEEECCCCCEECCHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 4578547878378857999899577789-988899996899559999758952713149999886304871799985677
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCE
Q ss_conf 22341479899999999999876498733088711431022432022221001222345832268888764315657522
Q gi|254780326|r 89 ANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKV 168 (416)
Q Consensus 89 ANA~TG~~G~~~a~~~~~~~a~~l~~~~~~Vl~~STGVIG~~Lp~~ki~~~i~~l~~~l~~~~~~~aA~AImTTDt~pK~ 168 (416)
||||||++|++|++++++.+++.|+|++++||++||||||||||+++|.++|+++..+|+.++|++||+||||||||||.
T Consensus 100 ANA~TG~~G~~da~~~~~~~a~~l~i~~~~VlvaSTGVIG~~Lp~~~I~~~i~~l~~~l~~~~~~~aA~AImTTDt~pK~ 179 (208)
T 1vra_A 100 ANACTGKRGLDDAYTMRAVGAETFHIPEHYVAVTSTGVIGEFLPMDVITNGIRQLKPEATIEGAHAFNEAILTTDTVEKH 179 (208)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHTSCGGGEEEEEEEESSCCCCHHHHHHHHHHCCCBSSHHHHHHHHHHHCSSCSSCCE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 44133787899999999987554154644505750243667689899988789887654166899998563189998705
Q ss_pred EEEEEEECCCEEEEEEEEECCHHCCCCCC
Q ss_conf 46688756962899998502000243452
Q gi|254780326|r 169 AVRTVDIDGIRVTINGLAKGAGMIAPDMA 197 (416)
Q Consensus 169 ~~~~~~i~g~~v~i~GiaKGsGMI~PnMA 197 (416)
++++++++|++++|+||||||||||||||
T Consensus 180 ~~~~~~i~g~~~~i~GIAKGsGMI~PNMA 208 (208)
T 1vra_A 180 TCYQTIVNGKTVTVGGVAKGSGMIHPNMA 208 (208)
T ss_dssp EEEEEEETTEEEEEEEEEECSSSCCCCBC
T ss_pred EEEEEEECCCEEEEEEEEEECCCCCCCCC
T ss_conf 89999989908999999806115684779
No 6
>2v4i_A Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_A* 2w4n_A*
Probab=100.00 E-value=0 Score=472.97 Aligned_cols=172 Identities=33% Similarity=0.488 Sum_probs=165.4
Q ss_pred CCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHH
Q ss_conf 47479999980310188946999994899869998325778534348888872358802999937872234147989999
Q gi|254780326|r 22 IKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTV 101 (416)
Q Consensus 22 i~Gf~~~~~~aGiK~~~r~DL~li~~~~pa~~AgvFT~N~~~AAPV~~~k~~l~~~~~raivvNSGnANA~TG~~G~~~a 101 (416)
++||++++++||+|+++|+||+||++++||++|||||+|+|+||||+|||++|+++.+|+|||||||||||||++|++|+
T Consensus 2 PkGf~~~~~~aGiK~~~r~Dl~li~~~~~~~~AgvFT~n~~~AapV~~~~~~l~~~~~raiivNSGnANa~TG~~G~~~~ 81 (173)
T 2v4i_A 2 PRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENA 81 (173)
T ss_dssp CTTEEEEEECCCSSTTCCCCEEEEEESSCEEEEEEECCCTTCCHHHHHHHHHTSSSBCCEEEEEESCCCCSCHHHHHHHH
T ss_pred CCCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCEECCCHHHHHHHHHCCCEEEEEEECCEEECCCCHHHHHHH
T ss_conf 98599999994255599987899996799469999723761047468889765068714899705703222658799999
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEE
Q ss_conf 99999998764987330887114310224320222210012223458322688887643156575224668875696289
Q gi|254780326|r 102 RFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVT 181 (416)
Q Consensus 102 ~~~~~~~a~~l~~~~~~Vl~~STGVIG~~Lp~~ki~~~i~~l~~~l~~~~~~~aA~AImTTDt~pK~~~~~~~i~g~~v~ 181 (416)
+++++.+|+.|+|++++||++||||||||||+|+|.++++++..++++++|++||+||||||||||.+. ++++.++
T Consensus 82 ~~~~~~~a~~l~~~~~~Vl~~STGVIG~~Lp~~ki~~~i~~l~~~l~~~~~~~aA~AImTTDt~pK~~~----i~~~~~~ 157 (173)
T 2v4i_A 82 REVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVR----VSVGGAT 157 (173)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEEESCSSCCCCHHHHHHHHTTCCCCSSCBCHHHHHHHHCSSCSSCEEEE----EEETTEE
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHEECCCCCEEEEE----EECCCEE
T ss_conf 999999986467576543561123234667806776141777775311218988655551577517999----9679899
Q ss_pred EEEEEECCHHCCCCCC
Q ss_conf 9998502000243452
Q gi|254780326|r 182 INGLAKGAGMIAPDMA 197 (416)
Q Consensus 182 i~GiaKGsGMI~PnMA 197 (416)
|.||||||||||||||
T Consensus 158 i~GiaKGsGMI~PnMA 173 (173)
T 2v4i_A 158 LVGIAKGVGMLEPDMA 173 (173)
T ss_dssp EEEEEECSSSCCCCCC
T ss_pred EEEEEEEHHHCCCCCC
T ss_conf 9999728664683759
No 7
>3it4_A Arginine biosynthesis bifunctional protein ARGJ alpha chain; ornithine acetyltransferase, structural genomics; 1.70A {Mycobacterium tuberculosis} PDB: 3it6_A
Probab=100.00 E-value=0 Score=467.40 Aligned_cols=178 Identities=35% Similarity=0.442 Sum_probs=167.9
Q ss_pred CCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCC-CEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCH
Q ss_conf 9878747479999980310188946999994899-869998325778534348888872358802999937872234147
Q gi|254780326|r 17 PVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNP-ASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGK 95 (416)
Q Consensus 17 p~l~~i~Gf~~~~~~aGiK~~~r~DL~li~~~~p-a~~AgvFT~N~~~AAPV~~~k~~l~~~~~raivvNSGnANA~TG~ 95 (416)
..+..++||++++++||||+++|+||+||+++.| +.+|||||+|+|+||||+|||++++++++|+|||||||||||||+
T Consensus 14 ~gvt~p~Gf~~~~~~aGiK~~~k~Dl~Li~s~~p~~~~AgvFT~N~~~AAPV~~~k~~l~~~~~raiivNSGNANA~TG~ 93 (199)
T 3it4_A 14 QGVTAPAGFRAAGVAAGIKASGALDLALVFNEGPDYAAAGVFTRNQVKAAPVLWTQQVLTTGRLRAVILNSGGANACTGP 93 (199)
T ss_dssp CCTTSSTTEEEEEECCSCSTTCCCCEEEEEECCSCCBEEEEEBCCSSCCHHHHHHHHHHTTSBCSEEEEECSBCCCSCHH
T ss_pred CCEECCCEEEEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEHHHHHHCCCCEEEEEEECCCCCCCCCH
T ss_conf 98855770799999975634999858999988999589999857822998650204543258638999966986542336
Q ss_pred HHHHHHHHHHHHHHHHCC-----CCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCH--HHHHHHHHHHHCCCCCCCE
Q ss_conf 989999999999987649-----873308871143102243202222100122234583--2268888764315657522
Q gi|254780326|r 96 RGRDTVRFIAKAVSELIP-----CKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATD--DAWLDSAKAMMTTDRYAKV 168 (416)
Q Consensus 96 ~G~~~a~~~~~~~a~~l~-----~~~~~Vl~~STGVIG~~Lp~~ki~~~i~~l~~~l~~--~~~~~aA~AImTTDt~pK~ 168 (416)
+|++|++++++.+++.|+ |+++|||++||||||||||+++|.++||++..+|.. .+|++||+||||||||||.
T Consensus 94 ~G~~~~~~~~~~~a~~l~~~~~~~~~~eVl~aSTGVIG~~Lp~~~i~~~i~~l~~~l~~~~~~~~~aA~AImTTDt~pK~ 173 (199)
T 3it4_A 94 AGFADTHATAEAVAAALSDWGTETGAIEVAVCSTGLIGDRLPMDKLLAGVAHVVHEMHGGLVGGDEAAHAIMTTDNVPKQ 173 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCGGGEEEEEBSCSSCCCCHHHHHHHHHHHHHHCBSSHHHHHHHHHHTCSSCSSCEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCHHHHHHEEECCCCCEEE
T ss_conf 66999999999999985114666775248973565345648989997304110234321121519875224476886367
Q ss_pred EEEEEEECCCEEEEEEEEECCHHCCCCCC
Q ss_conf 46688756962899998502000243452
Q gi|254780326|r 169 AVRTVDIDGIRVTINGLAKGAGMIAPDMA 197 (416)
Q Consensus 169 ~~~~~~i~g~~v~i~GiaKGsGMI~PnMA 197 (416)
++.+ .+++++|.||||||||||||||
T Consensus 174 ~~~~---~~~~~~i~GiAKGsGMI~PnMA 199 (199)
T 3it4_A 174 VALH---HHDNWTVGGMAKGAGMLAPSLA 199 (199)
T ss_dssp EEEE---CTTSCEEEEEEECSSSCCCCBC
T ss_pred EEEE---CCCCEEEEEEEEEHHHCCCCCC
T ss_conf 9998---5994999999727511584779
No 8
>1b65_A DMPA, protein (aminopeptidase); hydrolase, peptide degradation, NTN hydrolase; 1.82A {Ochrobactrum anthropi} SCOP: d.154.1.1
Probab=92.87 E-value=0.41 Score=25.95 Aligned_cols=281 Identities=14% Similarity=0.134 Sum_probs=131.3
Q ss_pred CCCCCCCCCCCCCEEEEEEEE--CC---C--CCCCCEEEEEEECCCC-----EEEEEECCCCCC-CCCHHHHHHHHCCCC
Q ss_conf 887789878747479999980--31---0--1889469999948998-----699983257785-343488888723588
Q gi|254780326|r 12 QSHVSPVLLPIKGVRLSAAAL--GI---K--YVGRDDVFLMVFDNPA-----SVAGVFTRSSCP-SAPVDFCKGNLSHGI 78 (416)
Q Consensus 12 ~~~~~p~l~~i~Gf~~~~~~a--Gi---K--~~~r~DL~li~~~~pa-----~~AgvFT~N~~~-AAPV~~~k~~l~~~~ 78 (416)
.|=-...+..|+|++++.... |- . ..-|--..+|..+.++ ..+|.+-+|-+. -.|..|-.+. ...
T Consensus 22 ~pGp~N~ITDV~GV~VGH~T~~~g~~~~~~~~~~~TGvTvIlp~~g~~~~~~v~gG~p~~~gt~~l~~~~~v~e~--g~~ 99 (375)
T 1b65_A 22 VTGPYNAITDVDGVGVGFQTIIENEPRPGRKRPARSGVTAILPHMQSETPVPVYAGVHRFNGNGEMTGTHWIEDG--GYF 99 (375)
T ss_dssp CBCTTSSGGGSTTCEEEEEEEECSSCCTTCSSCCEEEEEEEETTTTCSSCCCEEEEEEEEEESSCBCSHHHHHHH--CEE
T ss_pred CCCCCCCEECCCCCEECCEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCHHHHCCC--CCE
T ss_conf 889998502589966623165467654457998771069997289975668603010257886667814441657--623
Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH---CCCCCC-EEEE-------ECCCCCCCCCCH-HHHHHHCCCCCCC
Q ss_conf 029999378722341479899999999999876---498733-0887-------114310224320-2222100122234
Q gi|254780326|r 79 ARALIVNSGIANAFTGKRGRDTVRFIAKAVSEL---IPCKEE-EVYV-------ASTGIIGEFLDV-ALFDGVLSKMLCD 146 (416)
Q Consensus 79 ~raivvNSGnANA~TG~~G~~~a~~~~~~~a~~---l~~~~~-~Vl~-------~STGVIG~~Lp~-~ki~~~i~~l~~~ 146 (416)
..+|+.--|- .=|+..+--+...+.+. +..... -++| ..-|=|..+.|. +-..+++..+...
T Consensus 100 v~aIvLTGgs------afGl~a~~gV~~~l~~~~~g~~~~~~~~~ipvva~~~D~~~~d~~~~~~~~~~~~~A~~~A~~~ 173 (375)
T 1b65_A 100 LGPVVITNTH------GIGMAHHATVRWMVDRYASTYQTDDFLWIMPVVAETYDGALNDINGFPVTEADVRKALDNVASG 173 (375)
T ss_dssp CSCEEEEEGG------GHHHHHHHHHHHHHHHTHHHHSSSSCCCCCCEEEEECCTTTSCGGGCCCCHHHHHHHHHTCBSS
T ss_pred ECCEEEECCC------CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 1338987874------1324668999999986688777788640146348998177888577888699999999974228
Q ss_pred CCHHHHHHHHHHHHCCCCCC---CEEEEEEEECCCEEEEEEEEE----CCHH-------------------CCCCCCEEE
Q ss_conf 58322688887643156575---224668875696289999850----2000-------------------243452258
Q gi|254780326|r 147 ATDDAWLDSAKAMMTTDRYA---KVAVRTVDIDGIRVTINGLAK----GAGM-------------------IAPDMATTL 200 (416)
Q Consensus 147 l~~~~~~~aA~AImTTDt~p---K~~~~~~~i~g~~v~i~GiaK----GsGM-------------------I~PnMATML 200 (416)
--..+-..|-.. |++-.+. ..+++.+..++..++++-+.- |+.. -.|...|++
T Consensus 174 ~v~~G~VGAGtG-a~~g~~KGGiGtaS~~~~~~~g~~tVgalV~~N~gg~~~~~~~g~~~g~~~~~~~~~~~~~~~nTtI 252 (375)
T 1b65_A 174 PVQEGNCGGGTG-MITYGFKGGTGTASRVVEFGGRSFTIGALVQANHGQRDWLTIAGVPVGQHMRDGTPQSQLQERGSII 252 (375)
T ss_dssp CCCCBSCGGGTT-CEETTEECEEEEEEEEEEETTEEEEEEEEEEECCCCGGGCCBTTBCHHHHCCTTCHHHHC----CEE
T ss_pred CCCCCCCCCCCC-CEECCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEHHHHHCCCCCCCCCCCCCCEE
T ss_conf 854666663402-0004678875622578750788679999997525786444608836323333357665577899889
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 89996564399999999998600555414316765644228996326534677776888777799888878899999999
Q gi|254780326|r 201 AFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKDLAL 280 (416)
Q Consensus 201 ~fi~TDa~i~~~~L~~~L~~~v~~SFN~IsVDGDtSTNDtv~l~AnG~~~~~~~~i~~~~~~~~~~f~~aL~~v~~~LA~ 280 (416)
+.|.|||.+++..|+++-+.+-+-==-.|.-= +|+--|+++.||||...... .+ +
T Consensus 253 ~VVATdA~L~k~ql~RlA~~AhdGlARai~P~-ht~DGD~vfA~STg~~~~~~---~~--~------------------- 307 (375)
T 1b65_A 253 VVLATDLPLMPHQLKRLARRASIGIGRNGTPG-GNNSGDIFIAFSTANQRPMQ---HR--S------------------- 307 (375)
T ss_dssp EEEEECSCCCHHHHHHHHHTHHHHHHTTTCCC-CTTCEEEEEEEECCSCCCCG---GG--S-------------------
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC-CCCCCCEEEEEECCCCCCCC---CC--C-------------------
T ss_conf 99996995899999999987400032006788-89986869999568877776---66--6-------------------
Q ss_pred HHHCCCCCCCEEEEEEEECC-----CCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 86226300213799998248-----9999999998773571566555506788624453222
Q gi|254780326|r 281 QVVCDGEGASKLLEVTVKGA-----ADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMA 337 (416)
Q Consensus 281 ~Iv~DGEGatk~i~v~V~gA-----~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aA 337 (416)
.-++.+..... --...|+-+.++|.|+.+-=.-+.|...+ ||.+-|
T Consensus 308 ---------~~~~~~~~l~~~~l~~lf~Aaaea~eeAI~nAv~~A~~~~G~~~~--~~~~~a 358 (375)
T 1b65_A 308 ---------APFLDVEMVNDEPLDTVYLAAVDSVEEAVVNAMIAAEDMGGTPFD--RLLVQA 358 (375)
T ss_dssp ---------CSEEEEEEECSGGGHHHHHHHHHHHHHHHHHHHHHCCCEECSTTC--SCEECC
T ss_pred ---------CCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCEECC
T ss_conf ---------432230004723444999999999999999999855776586999--877227
No 9
>2drh_A PH0078 protein, 361AA long hypothetical D-aminopeptidase; structural genomics, NPPSFA; 2.10A {Pyrococcus horikoshii OT3}
Probab=89.18 E-value=0.74 Score=24.24 Aligned_cols=222 Identities=16% Similarity=0.147 Sum_probs=101.9
Q ss_pred CCCCCCCCCCCCCEEEEEEEECCCCC---------CCCEEEEEEECCCCE-----EEEEE-----CCCCCCCCCHHHHHH
Q ss_conf 88778987874747999998031018---------894699999489986-----99983-----257785343488888
Q gi|254780326|r 12 QSHVSPVLLPIKGVRLSAAALGIKYV---------GRDDVFLMVFDNPAS-----VAGVF-----TRSSCPSAPVDFCKG 72 (416)
Q Consensus 12 ~~~~~p~l~~i~Gf~~~~~~aGiK~~---------~r~DL~li~~~~pa~-----~AgvF-----T~N~~~AAPV~~~k~ 72 (416)
.|=-...+..|+|++++...- ++.. -+--..+|..++++. .+|.+ |+..= ..+-.
T Consensus 14 ~pGp~N~ITDV~Gv~VGHat~-~~g~~~~~~~~~~~~TGvTVIl~~~g~~~~vdVrgGap~~nggtret~----ll~p~- 87 (361)
T 2drh_A 14 KPGKRNKITDVKGVKVGHVTL-IKGKGKLIPGKGPVRTGVTAILPHEGNIYKEKVLAGAFVMNGYSKPVG----LIQLW- 87 (361)
T ss_dssp CCCSSCSGGGSTTCEEEEEEE-EECCSSCBTTTBCEEEEEEEEESSSSCTTTEEEEEEEEEEEECSCCBS----HHHHH-
T ss_pred CCCCCCCCCCCCCCEEECEEC-CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCCCC----CCCHH-
T ss_conf 989998311479966834073-268764346888777454899638997245761043104689863014----46865-
Q ss_pred HHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC--CE--EEEECC-----CCCCCCCCHHH-HHHHCCC
Q ss_conf 72358802999937872234147989999999999987649873--30--887114-----31022432022-2210012
Q gi|254780326|r 73 NLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKE--EE--VYVAST-----GIIGEFLDVAL-FDGVLSK 142 (416)
Q Consensus 73 ~l~~~~~raivvNSGnANA~TG~~G~~~a~~~~~~~a~~l~~~~--~~--Vl~~ST-----GVIG~~Lp~~k-i~~~i~~ 142 (416)
++- ....+|+.--|-| =|+..+--+...+.+.-+... .. .+++.+ +-++.+.|.+. -.+++..
T Consensus 88 ~~~-~~v~aIvLtGgSa------fGlaa~~~v~~~le~~~~~~~~~~~vvPiV~~~~d~~l~~~~~~~~~~~~~~~A~~a 160 (361)
T 2drh_A 88 ELG-TIETPIILTNTLS------IGTAVEGLLDYILEENEDIGVTTGSVNPLVLECNDSYLNDIRGRHVKREHVVEAIKR 160 (361)
T ss_dssp HHC-EECSCEEEEEGGG------HHHHHHHHHHHHHHHCTTBTTTBCCCCCEEEEECCTTTSCGGGCCCCHHHHHHHHHH
T ss_pred HCC-CCCCCEEECCCCC------HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 627-7443278438874------014778999999987789886787346246330224457766779717789999986
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCC---CEEEEEEEECCCEEEEEEEEE---C-------------------CHHCCCCCC
Q ss_conf 223458322688887643156575---224668875696289999850---2-------------------000243452
Q gi|254780326|r 143 MLCDATDDAWLDSAKAMMTTDRYA---KVAVRTVDIDGIRVTINGLAK---G-------------------AGMIAPDMA 197 (416)
Q Consensus 143 l~~~l~~~~~~~aA~AImTTDt~p---K~~~~~~~i~g~~v~i~GiaK---G-------------------sGMI~PnMA 197 (416)
...... .+-..|- .=||+-.+. ..+++.+..++..++++.+.- | ...-.|...
T Consensus 161 a~~~~~-~G~vGAG-tGa~~g~~KGG~GsaS~~v~~~~~~~tVGAlV~~N~g~~~~~~~~g~~~g~~~~~~~~~~~~~~N 238 (361)
T 2drh_A 161 ADEDFE-EGAVGAG-TGMSAFEFKGGIGSASRIVEIEGKKYTVGALVLSNFGRREDLTIAGVPVGLELKNWPGRGGEGKG 238 (361)
T ss_dssp CBSSCC-CBSSGGG-TTCEETTEECEEEEEEEEEESSSCEEEEEEEEEECCCCGGGCCBTTBCHHHHTTTSSCCC-----
T ss_pred CCCCCC-CCCCCCC-CEEEECCCCCCCCCCEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 579866-5476678-70675667777773025750277348999998514687666543770566000245666778899
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCC
Q ss_conf 2588999656439999999999860055541431676564422899632653
Q gi|254780326|r 198 TTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTV 249 (416)
Q Consensus 198 TML~fi~TDa~i~~~~L~~~L~~~v~~SFN~IsVDGDtSTNDtv~l~AnG~~ 249 (416)
|.++.|.|||.+++..|+++-+.+-+-==-.|.- .+|+--|+++.||+|..
T Consensus 239 TTI~VVATdA~Ltk~ql~RlA~~AhdGlARai~P-~ht~DGD~vfa~STg~~ 289 (361)
T 2drh_A 239 SIIMIIATDAPLTGRQLNRVAKRAIVGLARTGGY-AYNGSGDIAVAFSTANR 289 (361)
T ss_dssp CEEEEEEECSCCCHHHHHHHHHHHHHHHHHTTCC-CCTTCEEEEEEEEEEEE
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCHHHCCCC-CCCCCCCEEEEEECCCC
T ss_conf 8899999599689999999999864023203677-78898785899967887
No 10
>1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A {Caenorhabditis elegans} SCOP: f.1.4.1 PDB: 1ty4_A
Probab=86.13 E-value=0.66 Score=24.58 Aligned_cols=56 Identities=11% Similarity=0.220 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCC
Q ss_conf 888878899999999862263002137999982489999999998773571566555506788624453222024
Q gi|254780326|r 266 LFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGK 340 (416)
Q Consensus 266 ~f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~ 340 (416)
+|++....+...+++++-.. --........+++.+....|++. ..| ||||++-.--
T Consensus 55 elE~~~~~~f~~~~~qL~i~-------------~~~a~~~f~~Va~~~~~d~lf~~-----gin-WGRIVal~aF 110 (175)
T 1ohu_A 55 IFEKKHAENFETFSEQLLAV-------------PRISFSLYQDVVRTVGNAQTDQS-----PMS-YGRLIGLISF 110 (175)
T ss_dssp HHHHHHHHHHHHHHHHHTSS-------------SSCCHHHHHHHHTTSCC-----------CCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-------------CCCCHHHHHHHHHHHHHHHHCCC-----CCC-HHHHHHHHHH
T ss_conf 99999799999999982888-------------78418899999999987553047-----887-9999999999
No 11
>2kua_A BCL-2-like protein 10; BOO, DIVA, apoptosis, BH3-only, membrane, mitochondri nucleus, transmembrane; NMR {Mus musculus}
Probab=79.03 E-value=2.4 Score=20.88 Aligned_cols=17 Identities=29% Similarity=0.817 Sum_probs=12.0
Q ss_pred CCCCCHHHHHHHHCCCCC
Q ss_conf 788624453222024577
Q gi|254780326|r 326 ESFGWWGRIVMAVGKSGV 343 (416)
Q Consensus 326 ~DpN~WGRI~aAiG~sg~ 343 (416)
+..| ||||++-+.-+|.
T Consensus 88 g~iN-WGRIVaLf~F~g~ 104 (170)
T 2kua_A 88 QDFS-WSQLVMLLAFAGT 104 (170)
T ss_dssp SCCC-HHHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHHHHHHH
T ss_conf 8986-9999999999999
No 12
>2vof_A BCL-2-related protein A1; BH3, cytoplasm, apoptosis, Pro-surviVal, mitochondrion, protein-protein complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=75.80 E-value=1.3 Score=22.59 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCC
Q ss_conf 9999999998773571566555506788624453222024577
Q gi|254780326|r 301 ADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGV 343 (416)
Q Consensus 301 ~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~sg~ 343 (416)
.+...|+.+-+.|+.... .-++.| ||||++-+--++.
T Consensus 67 ~s~~~a~~~f~~Va~elF-----~DG~iN-WGRIval~~F~g~ 103 (157)
T 2vof_A 67 ESIDTARIIFNQVMEKEF-----EDGIIN-WGRIVTIFAFGGV 103 (157)
T ss_dssp CSHHHHHHHHHHHHHHHH-----TTCCCC-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH-----CCCCCC-HHHHHHHHHHHHH
T ss_conf 894439999999999984-----789987-8999999999999
No 13
>3fdl_A Apoptosis regulator BCL-X; helical bundle, peptide-protein complex, apoptosis, alternative splicing, membrane, mitochondrion, nucleus, transmembrane; 1.78A {Homo sapiens} PDB: 3fdm_A 3inq_A* 3io8_A 2p1l_A 2o2m_A* 2o2n_A*
Probab=74.69 E-value=2.6 Score=20.69 Aligned_cols=52 Identities=23% Similarity=0.347 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCC
Q ss_conf 8887889999999986226300213799998248999999999877357156655550678862445322202457
Q gi|254780326|r 267 FRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSG 342 (416)
Q Consensus 267 f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~sg 342 (416)
|++.......++.+++- + ++..+...-..|++. +|....| ||||++-+--++
T Consensus 46 le~~~~~~f~~~~~~L~-------------i----t~~~~~~~f~~Va~e------lF~dgin-WGRIval~~F~g 97 (158)
T 3fdl_A 46 FELRYRRAFSDLTSQLH-------------I----TPGTAYQSFEQVVNE------LFRDGVN-WGRIVAFFSFGG 97 (158)
T ss_dssp HHHHTHHHHHHHHHTCC-------------C----CTTTHHHHHHHHHHH------HTTTCCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC-------------C----CCCCHHHHHHHHHHH------HHCCCCC-HHHHHHHHHHHH
T ss_conf 99998999999999808-------------8----975189999999999------8048996-699999999999
No 14
>2a5y_A Apoptosis regulator CED-9; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: f.1.4.1
Probab=72.40 E-value=2.3 Score=21.02 Aligned_cols=56 Identities=11% Similarity=0.198 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCC
Q ss_conf 888788999999998622630021379999824899999999987735715665555067886244532220245
Q gi|254780326|r 267 FRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKS 341 (416)
Q Consensus 267 f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~s 341 (416)
|++.-...+.++++|+-... ......-..|++.+..+-+++ ...| ||||++-+--+
T Consensus 76 lE~~h~~~f~~m~~qL~it~-------------~~a~~~f~~Va~~~~~~e~f~-----~gin-WGRIVaL~aF~ 131 (204)
T 2a5y_A 76 FEKKHAENFETFSEQLLAVP-------------RISFSLYQDVVRTVGNAQTDQ-----SPMS-YGRLIGLISFG 131 (204)
T ss_dssp HHHHTCTTHHHHHHHHHSSS-------------SCCHHHHHHHHTTTTCCC--C-----CTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCC-------------CCHHHHHHHHHHHHHHHHHHC-----CCCC-HHHHHHHHHHH
T ss_conf 99999999999999818999-------------837999999999985355514-----7887-99999999999
No 15
>1g5m_A Protein (apoptosis regulator BCL-2 with putative flexible loop replaced with A portion...; NMR {Homo sapiens} SCOP: f.1.4.1 PDB: 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=71.62 E-value=3.4 Score=19.88 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCC
Q ss_conf 8887889999999986226300213799998248999999999877357156655550678862445322202457
Q gi|254780326|r 267 FRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSG 342 (416)
Q Consensus 267 f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~sg 342 (416)
....|..+..+|-++--.-=++..+-+.+ +...+...=.+|++. +|....| ||||++-.--++
T Consensus 52 v~~~Lr~vgdele~~~~~~f~~~~~~L~i------t~~~~~~~f~~Va~e------lF~dgin-WGRIVal~~F~g 114 (166)
T 1g5m_A 52 VHLALRQAGDDFSRRYRGDFAEMSSQLHL------TPFTARGRFATVVEE------LFRDGVN-WGRIVAFFEFGG 114 (166)
T ss_dssp HHHHHHHHHHHHHHHHCSSSTGGGGSSCC------SHHHHHHHHHHHHHH------HTTSCCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCCCHHHHHHHHHHH------HCCCCCC-HHHHHHHHHHHH
T ss_conf 99999999999999989999999998299------942089999999999------8479998-999999999999
No 16
>2wh6_A Early antigen protein R; mitochondrion, early protein, transmembrane, viral protein, apoptosis; 1.50A {Human herpesvirus 4} PDB: 2v6q_A 1q59_A
Probab=71.24 E-value=1.4 Score=22.33 Aligned_cols=16 Identities=13% Similarity=0.079 Sum_probs=11.6
Q ss_pred HHHC-CCCCCHHHHHHHH
Q ss_conf 5506-7886244532220
Q gi|254780326|r 322 AFAS-ESFGWWGRIVMAV 338 (416)
Q Consensus 322 A~~G-~DpN~WGRI~aAi 338 (416)
-+|. +++| ||||++=.
T Consensus 102 EiF~DG~~N-WGRIVa~f 118 (173)
T 2wh6_A 102 EIFHRGDPS-LGRALAWM 118 (173)
T ss_dssp HHHSSSCCC-HHHHHHHH
T ss_pred HHHHCCCCC-HHHHHHHH
T ss_conf 998369985-99999999
No 17
>1k3k_A Functional anti-apoptotic factor VBCL-2 homolog; solution structure, apoptosis; NMR {Human herpesvirus 8} SCOP: f.1.4.1
Probab=60.56 E-value=2.9 Score=20.29 Aligned_cols=18 Identities=17% Similarity=0.547 Sum_probs=12.6
Q ss_pred HHCCC-CCCHHHHHHHHCCC
Q ss_conf 50678-86244532220245
Q gi|254780326|r 323 FASES-FGWWGRIVMAVGKS 341 (416)
Q Consensus 323 ~~G~D-pN~WGRI~aAiG~s 341 (416)
+|... .| ||||++-+.-+
T Consensus 76 lF~DG~~N-WGRIVaLfaFg 94 (158)
T 1k3k_A 76 VSGDGNMN-WGRALAILTFG 94 (158)
T ss_dssp HCSSCSCC-HHHHHHHHHHH
T ss_pred HHCCCCCC-HHHHHHHHHHH
T ss_conf 97279986-89999999999
No 18
>2ims_A Apoptosis regulator BAK; dimer; 1.48A {Homo sapiens} PDB: 2imt_A 2jcn_A 2yv6_A 2jby_B 2voh_B*
Probab=58.44 E-value=4.6 Score=19.01 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCC
Q ss_conf 99999999877357156655550678862445322202457
Q gi|254780326|r 302 DCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSG 342 (416)
Q Consensus 302 ~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~sg 342 (416)
+...|...=..|++. +|...-| ||||++-..-++
T Consensus 88 t~~~a~~~F~~Va~e------lF~dgin-WGRIval~~F~~ 121 (171)
T 2ims_A 88 TAENAYEYFTKIATS------LFESGIN-WGRVVALLGFGY 121 (171)
T ss_dssp SHHHHHHHHHHHHHH------HTTTCCC-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH------HHCCCCC-HHHHHHHHHHHH
T ss_conf 964399999999999------9548996-999999999999
No 19
>1r2d_A Apoptosis regulator BCL-X; monomeric, alpha-helical; 1.95A {Homo sapiens} SCOP: f.1.4.1 PDB: 2b48_A 1r2i_A 1r2h_A 1r2g_A 1r2e_A 1bxl_A 1lxl_A 1maz_A 3cva_X 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 1g5j_A
Probab=55.69 E-value=2.4 Score=20.90 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCC
Q ss_conf 998888788999999998622630021379999824899999999987735715665555067886244532220245
Q gi|254780326|r 264 LSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKS 341 (416)
Q Consensus 264 ~~~f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~s 341 (416)
.....++|..++.+|-++--+.=++..+-+.++ +..|...=.+|++. +|...-| ||||++...-+
T Consensus 83 ~~~V~~~Lr~~gdele~~~~~~f~~m~~qL~it------~~~a~~~F~~Va~e------lF~dgin-WGRIVaL~~F~ 147 (218)
T 1r2d_A 83 MAAVKQALREAGDEFELRYRRAFSDLTSQLHIT------PGTAYQSFEQVVNE------LFRDGVN-WGRIVAFFSFG 147 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSTTHHHHHHHCCC------TTCCHHHHHHHHGG------GGTTCCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCHHHHHHHHHHH------HHCCCCC-HHHHHHHHHHH
T ss_conf 679999999999999999899999999824899------86189999999999------9547996-57889999999
No 20
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=54.70 E-value=3.5 Score=19.77 Aligned_cols=31 Identities=23% Similarity=0.451 Sum_probs=18.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCC
Q ss_conf 99999877357156655550678862445322202457
Q gi|254780326|r 305 SAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSG 342 (416)
Q Consensus 305 ~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~sg 342 (416)
.+...-..|++. +|....| ||||++-..-++
T Consensus 63 ~~~~~f~~Va~e------lF~dgin-WGRIval~~F~g 93 (144)
T 2w3l_A 63 TARGRFATVVEE------LFRDGVN-WGRIVAFFEFGG 93 (144)
T ss_dssp THHHHHHHHHHH------HTTTCCC-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH------HHCCCCC-HHHHHHHHHHHH
T ss_conf 499999999999------8568997-999999999999
No 21
>1mk3_A BCL-W, apoptosis regulator BCL-W; BCL-W protein, apoptotis; NMR {Homo sapiens} SCOP: f.1.4.1 PDB: 1zy3_A 1o0l_A
Probab=52.24 E-value=3.7 Score=19.65 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=12.8
Q ss_pred HHCCCCCCHHHHHHHHCCCC
Q ss_conf 50678862445322202457
Q gi|254780326|r 323 FASESFGWWGRIVMAVGKSG 342 (416)
Q Consensus 323 ~~G~DpN~WGRI~aAiG~sg 342 (416)
+|....| ||||++-..-++
T Consensus 85 lF~dgin-WGRIVal~~F~g 103 (178)
T 1mk3_A 85 LFQGGPN-WGRLVAFFVFGA 103 (178)
T ss_dssp HHTTCCC-SHHHHHHHHHHH
T ss_pred HCCCCCC-HHHHHHHHHHHH
T ss_conf 8579996-999999999999
No 22
>2nl9_A Fusion protein consisting of induced myeloid leukemia cell differentiation protein...; apoptosis, MCL-1, BIM; HET: MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 1wsx_A 2jm6_B 2roc_A 2rod_A 2kbw_A 3mk8_B
Probab=49.33 E-value=6.2 Score=18.16 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=11.7
Q ss_pred CCCCCCHHHHHHHHCCCC
Q ss_conf 678862445322202457
Q gi|254780326|r 325 SESFGWWGRIVMAVGKSG 342 (416)
Q Consensus 325 G~DpN~WGRI~aAiG~sg 342 (416)
.+..| ||||++-+.-++
T Consensus 86 dg~~n-WGRIval~~F~g 102 (157)
T 2nl9_A 86 DGVTN-WGRIVTLISFGA 102 (157)
T ss_dssp GSCCC-HHHHHHHHHHHH
T ss_pred CCCCC-HHHHHHHHHHHH
T ss_conf 68875-569999999999
No 23
>3ilc_A BCL-2-like protein 1; apoptosis, BH3 domain, alternative splicing, cytoplasm, membrane, mitochondrion, transmembrane; 1.64A {Mus musculus} PDB: 3ihd_A 2bzw_A 1pq1_A 1pq0_A 3ihc_A 3iih_A 1af3_A 3ihf_A 3ilb_A 3iig_A 3ihe_A 2pon_B
Probab=45.63 E-value=3.9 Score=19.46 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCC
Q ss_conf 9888878899999999862263002137999982489999999998773571566555506788624453222024
Q gi|254780326|r 265 SLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGK 340 (416)
Q Consensus 265 ~~f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~ 340 (416)
....++|..+..+|-++--++=++..+-+.+ +. ..|...=..|++. | |-...| ||||++-..-
T Consensus 85 ~~v~~~Lr~~Gde~e~~~~~~f~~m~~qL~i--t~----~~a~~~F~~Va~e-l-----F~dgin-WGRIVal~~F 147 (197)
T 3ilc_A 85 AAVKQALREAGDEFELRARRAFSDLTSQLHI--TP----GTAYQSFEQVVNE-L-----FRDGVN-WGRIVAFFSF 147 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC--CT----TCCHHHHHHHHGG-G-----GTTCCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CC----CCHHHHHHHHHHH-H-----HCCCCC-HHHHHHHHHH
T ss_conf 7999999999999999989999999985188--98----5289999999999-9-----547995-7888999999
No 24
>1f16_A Protein (apoptosis regulator BAX, membrane isoform alpha); helical protein; NMR {Homo sapiens} SCOP: f.1.4.1 PDB: 2k7w_A
Probab=42.08 E-value=6.4 Score=18.05 Aligned_cols=66 Identities=21% Similarity=0.287 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCC-CCCCHHHHHHHH
Q ss_conf 7777998888788999999998622630021379999824899999999987735715665555067-886244532220
Q gi|254780326|r 260 SDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASE-SFGWWGRIVMAV 338 (416)
Q Consensus 260 ~~~~~~~f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~-DpN~WGRI~aAi 338 (416)
.++........|..+-.+|-+.+-.++--. + .+...++.+=..|++. +|.. +.| ||||++-.
T Consensus 52 ~~~~~~~v~~~L~~igdel~~~~~~~~~i~-~---------~~~~~a~~~f~~Va~e------lF~dG~in-WGRIval~ 114 (192)
T 1f16_A 52 QDASTKKLSECLKRIGDELDSNMELQRMIA-A---------VDTDSPREVFFRVAAD------MFSDGNFN-WGRVVALF 114 (192)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHHHHHHT-T---------SCCSCHHHHHHHHHHH------HTSSSSCC-SHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-C---------CCCCHHHHHHHHHHHH------HHCCCCCC-HHHHHHHH
T ss_conf 744299999999999899999999986562-1---------6842099999999999------97269974-89999999
Q ss_pred CCCC
Q ss_conf 2457
Q gi|254780326|r 339 GKSG 342 (416)
Q Consensus 339 G~sg 342 (416)
.-++
T Consensus 115 ~fa~ 118 (192)
T 1f16_A 115 YFAS 118 (192)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 25
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=35.68 E-value=19 Score=14.92 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=63.5
Q ss_pred CEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 47999998031018894699999489986999832577853434888887235880299993787223414798999999
Q gi|254780326|r 24 GVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTVRF 103 (416)
Q Consensus 24 Gf~~~~~~aGiK~~~r~DL~li~~~~pa~~AgvFT~N~~~AAPV~~~k~~l~~~~~raivvNSGnANA~TG~~G~~~a~~ 103 (416)
=.++..+-|-..-..+-||.-++..-+- ..|-..+|++.-+. +...++.++|-+||.-. |||-+..++++.
T Consensus 12 ~i~I~NvVas~~l~~~iDL~~la~~l~n---~eY~P~~f~~l~~R-----~~~p~~tvliF~sGkiv-itG~ks~~~a~~ 82 (198)
T 1mp9_A 12 VVNIENIVATVTLDQTLDLYAMERSVPN---VEYDPDQFPGLIFR-----LESPKITSLIFKSGKMV-VTGAKSTDELIK 82 (198)
T ss_dssp EEEEEEEEEEEECCSCCCHHHHHHHSTT---CBCCTTTCSSEEEE-----ETTTTEEEEECTTSEEE-EECCSSHHHHHH
T ss_pred EEEEEEEEEEEECCCCCCHHHHHHHCCC---CEECCCCCCEEEEE-----ECCCCEEEEEECCCEEE-EECCCCHHHHHH
T ss_conf 5899999999985993279999965899---78877668669999-----67995699996698099-836799999999
Q ss_pred HHHHHHHHC---CCCC------CEEEEECCCCCCCCCCHHHHHHHC
Q ss_conf 999998764---9873------308871143102243202222100
Q gi|254780326|r 104 IAKAVSELI---PCKE------EEVYVASTGIIGEFLDVALFDGVL 140 (416)
Q Consensus 104 ~~~~~a~~l---~~~~------~~Vl~~STGVIG~~Lp~~ki~~~i 140 (416)
.++.+.+.| +... .-..+-+|.=+|.+++.+++....
T Consensus 83 a~~~~~~~L~~~~~~~~~~~~~~i~nIvas~~~~~~i~L~~l~~~~ 128 (198)
T 1mp9_A 83 AVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLL 128 (198)
T ss_dssp HHHHHHHHHHHTTCCCSSCCEEEEEEEEEEEECSSEECHHHHHHHS
T ss_pred HHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHC
T ss_conf 9999999999739865467751599999771059852478988630
No 26
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic protozoa, SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=34.43 E-value=20 Score=14.80 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 99999999998764987330887114310
Q gi|254780326|r 99 DTVRFIAKAVSELIPCKEEEVYVASTGII 127 (416)
Q Consensus 99 ~~a~~~~~~~a~~l~~~~~~Vl~~STGVI 127 (416)
+..++..+.+|+.+|+++.+|++.|.|-=
T Consensus 49 ~~~~~l~~~iA~~~g~~~~~v~~t~~Gte 77 (359)
T 1svv_A 49 SHCAKAARLIGELLERPDADVHFISGGTQ 77 (359)
T ss_dssp HHHHHHHHHHHHHHTCTTSEEEEESCHHH
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHH
T ss_conf 89999999999985999625998385899
No 27
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=34.32 E-value=20 Score=14.78 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCC
Q ss_conf 98888788999999998622630021379999824899999999987735715665555067886244532220245776
Q gi|254780326|r 265 SLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVL 344 (416)
Q Consensus 265 ~~f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~sg~~ 344 (416)
.+++++|.+++..|+++= | |-+.|.++ |+++++|++.+- + .-|+++-+||-
T Consensus 27 ~ELqr~L~EL~~~i~r~G------A-r~V~IsIs-A~~~~qA~~~~~-----------i-------i~r~~~~LGY~--- 77 (106)
T 1qys_A 27 SELQKVLNELMDYIKKQG------A-KRVRISIT-ARTKKEAEKFAA-----------I-------LIKVFAELGYN--- 77 (106)
T ss_dssp SHHHHHHHHHHHHHHHHC------C-SEEEEEEE-CSSHHHHHHHHH-----------H-------HHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHHCC------C-CEEEEEEE-ECCHHHHHHHHH-----------H-------HHHHHHHHCCC---
T ss_conf 899999999999998717------6-45899999-666788999999-----------9-------99999983976---
Q ss_pred CCHHHEEEEECCEEEEECCCC
Q ss_conf 582334999899998717731
Q gi|254780326|r 345 VDRDRLSVWFGDVRIANNGEP 365 (416)
Q Consensus 345 ~d~~~i~i~ig~~~v~~~G~~ 365 (416)
.+.+++++-.|-..|+.
T Consensus 78 ----DINV~~~G~~V~iE~~~ 94 (106)
T 1qys_A 78 ----DINVTFDGDTVTVEGQL 94 (106)
T ss_dssp ----EEEEEEETTEEEEEEEC
T ss_pred ----CEEEEECCCEEEEEEEE
T ss_conf ----31899858189999886
No 28
>3cf4_A Acetyl-COA decarbonylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductase; 2.00A {Methanosarcina barkeri}
Probab=33.69 E-value=21 Score=14.72 Aligned_cols=14 Identities=14% Similarity=0.081 Sum_probs=6.7
Q ss_pred CEEEEEEECCCCEE
Q ss_conf 46999994899869
Q gi|254780326|r 40 DDVFLMVFDNPASV 53 (416)
Q Consensus 40 ~DL~li~~~~pa~~ 53 (416)
.|+.-+-+-.||..
T Consensus 73 C~~C~lC~~GPCrI 86 (807)
T 3cf4_A 73 CDQCCYCTYGPCDL 86 (807)
T ss_dssp SSEECSSTTCCEEC
T ss_pred CCCCCCCCCCCCCC
T ss_conf 51122778989879
No 29
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 2aly_A* 2akw_A* 2amc_A*
Probab=32.49 E-value=5.5 Score=18.49 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=4.6
Q ss_pred CCCCCHHHHHHHC
Q ss_conf 2243202222100
Q gi|254780326|r 128 GEFLDVALFDGVL 140 (416)
Q Consensus 128 G~~Lp~~ki~~~i 140 (416)
|..=|+.++.+-|
T Consensus 98 G~~HPit~v~~eI 110 (350)
T 1b7y_A 98 GGLHPITLMEREL 110 (350)
T ss_dssp CBCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
T ss_conf 7748799999999
No 30
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.51 E-value=23 Score=14.38 Aligned_cols=44 Identities=20% Similarity=0.213 Sum_probs=31.9
Q ss_pred EEEECCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCE
Q ss_conf 99989999871773187889999998625487799997268981
Q gi|254780326|r 351 SVWFGDVRIANNGEPEINFSQESVRSIVKKKCVPITVDLQIGNG 394 (416)
Q Consensus 351 ~i~ig~~~v~~~G~~~~~~~e~~~~~~~~~~~i~i~idLg~G~~ 394 (416)
.|..||+.+--||........+++.+.+++..-.+.+.+..++.
T Consensus 49 gL~~GD~Il~VNg~~v~~~s~~evv~ll~~~~~~v~L~V~r~ps 92 (94)
T 2eeg_A 49 ALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSSGPS 92 (94)
T ss_dssp TCCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEEEEEECCSS
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 99999999989999999998999999997699849999992899
No 31
>1x45_A Amyloid beta (A4) precursor protein-binding, family A, member 1 (X11); PDZ domain, neuron-specific XII protein, adapter protein XII alpha; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=28.82 E-value=25 Score=14.19 Aligned_cols=45 Identities=18% Similarity=0.311 Sum_probs=33.7
Q ss_pred EEEECCEEEEECCCCCCCCCHHHHHHHHCC--CCEEEEEECCCCCEE
Q ss_conf 999899998717731878899999986254--877999972689812
Q gi|254780326|r 351 SVWFGDVRIANNGEPEINFSQESVRSIVKK--KCVPITVDLQIGNGI 395 (416)
Q Consensus 351 ~i~ig~~~v~~~G~~~~~~~e~~~~~~~~~--~~i~i~idLg~G~~~ 395 (416)
.|..||..+.-||.+..++..+.+.+.++. .++.+.+..-.++.+
T Consensus 51 ~l~~GD~Il~INg~~v~~~t~~~~~~~l~~~~~~~~v~l~i~~~P~s 97 (98)
T 1x45_A 51 KLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVSGPSS 97 (98)
T ss_dssp SCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEEEEEECCCCC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf 99999999999999988998999999997399984899999669989
No 32
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi}
Probab=28.59 E-value=25 Score=14.16 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=34.7
Q ss_pred CCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 94699999489986999832577853434888887235880299993787223414798999999999998764
Q gi|254780326|r 39 RDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELI 112 (416)
Q Consensus 39 r~DL~li~~~~pa~~AgvFT~N~~~AAPV~~~k~~l~~~~~raivvNSGnANA~TG~~G~~~a~~~~~~~a~~l 112 (416)
+.||--+...-+- +.|-..+|++.-+.+ ...++.++|-+||.-. |||-+..+++++.++.+.+.|
T Consensus 57 ~ldL~~la~~l~n---~~YnP~~fp~l~~R~-----~~P~~tv~IF~sGkiv-itG~ks~~~~~~a~~~l~~~L 121 (218)
T 3eik_A 57 KLDLKNIALRARN---AEYNPKRFAAVIMRI-----REPKTTALIFASGKMV-ITGAKSEKSSRMAAQRYAKII 121 (218)
T ss_dssp CCCHHHHHHHCTT---EECCTTTCSSEEEEE-----TTTTEEEEECTTSEEE-EEEESSHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHCCC---CEECCCCCCEEEEEE-----CCCCEEEEEECCCCEE-EECCCCHHHHHHHHHHHHHHH
T ss_conf 2169999965799---898875586799995-----5995599997798299-945788999999999999999
No 33
>1uty_A Non-structural protein 2; viral protein, RNA binding protein; 2.4A {Bluetongue virus} SCOP: b.147.1.1
Probab=27.75 E-value=16 Score=15.36 Aligned_cols=107 Identities=14% Similarity=0.133 Sum_probs=49.3
Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC-CCCCCHHH-HHHHCCCCC-CCC-CH---HH
Q ss_conf 0299993787223414798999999999998764987330887114310-22432022-221001222-345-83---22
Q gi|254780326|r 79 ARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGII-GEFLDVAL-FDGVLSKML-CDA-TD---DA 151 (416)
Q Consensus 79 ~raivvNSGnANA~TG~~G~~~a~~~~~~~a~~l~~~~~~Vl~~STGVI-G~~Lp~~k-i~~~i~~l~-~~l-~~---~~ 151 (416)
-|-+.+-+-+.|-+ |..+|+.++++-=+|=+.-|=.. +...|..+ ..--|+... ..+ +. -+
T Consensus 9 Trtv~vld~~~kt~------------cgkiak~~~~~Y~~VKiGr~~~~~~v~~P~Pk~yVleI~~~gAyRIqDg~dvis 76 (187)
T 1uty_A 9 TKNIFVLDVTAKTL------------CGAIAKLSSQPYCQIKIGRVVAFKPVKNPEPKGYVLNVPGPGAYRIQDGQDIIS 76 (187)
T ss_dssp CEEEEEECTTCCSH------------HHHHHHHTTCSEEEEEESSSCEEEEESSCCTTCEEEECSSSEEEEEEETTEEEE
T ss_pred EEEEEEEECCCCCH------------HHHHHHHHCCCEEEEEECCEEEEEECCCCCCCEEEEEECCCCEEEEECCCCEEE
T ss_conf 67899994688606------------899998627970899974578862618999973899936885689873881699
Q ss_pred HHHHHHHH-HCCCCCCCEEEEE---------EEECCCEEE-EEEEEECCHHCCCCCC
Q ss_conf 68888764-3156575224668---------875696289-9998502000243452
Q gi|254780326|r 152 WLDSAKAM-MTTDRYAKVAVRT---------VDIDGIRVT-INGLAKGAGMIAPDMA 197 (416)
Q Consensus 152 ~~~aA~AI-mTTDt~pK~~~~~---------~~i~g~~v~-i~GiaKGsGMI~PnMA 197 (416)
..=.+.+| +||+..++..+.. +.++|..+- -.-++||+||+.|-|.
T Consensus 77 lmIs~~GvE~t~eRWee~kFEtv~~~p~~~ri~igg~~~d~EIK~~K~~g~V~PYTr 133 (187)
T 1uty_A 77 LMLTPHGVEATTERWEEWKFEGVSVTPMATRVQYNGVMVDAEIKYCKGMGIVQPYMR 133 (187)
T ss_dssp EEECSSCEEEESSCCTTBCCEEEECEEEEEEEEETTEEEEEEEEEEECCCCSCTTCB
T ss_pred EEEECCCEEEECCCHHCCEEEEECCCCCEEEEEECCEEEEEEEEEEEECCCCCCCCC
T ss_conf 998065411011200011556611314269998876743236787330233388562
No 34
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=24.23 E-value=30 Score=13.65 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=30.9
Q ss_pred EEECCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEEC
Q ss_conf 99899998717731878899999986254877999972
Q gi|254780326|r 352 VWFGDVRIANNGEPEINFSQESVRSIVKKKCVPITVDL 389 (416)
Q Consensus 352 i~ig~~~v~~~G~~~~~~~e~~~~~~~~~~~i~i~idL 389 (416)
+..||..+--||.+..+++.+.+...+++..+.+.|..
T Consensus 53 L~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~Ltv~~ 90 (94)
T 3kzd_A 53 LKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRT 90 (94)
T ss_dssp CCTTCEEEEETTEEGGGCCHHHHHHHHHSSEEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf 84789999999999899999999999866997799997
No 35
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.87 E-value=30 Score=13.61 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=28.0
Q ss_pred EEECCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEEC
Q ss_conf 99899998717731878899999986254877999972
Q gi|254780326|r 352 VWFGDVRIANNGEPEINFSQESVRSIVKKKCVPITVDL 389 (416)
Q Consensus 352 i~ig~~~v~~~G~~~~~~~e~~~~~~~~~~~i~i~idL 389 (416)
|..|++.+.-||.+...++.+.+.+.+++..+.+.|..
T Consensus 62 L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~l~v~~ 99 (114)
T 2d8i_A 62 LKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRT 99 (114)
T ss_dssp CCTTCCEEEESSCBGGGCCHHHHHHHHTSSEEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf 98999999999999899999999999857997799998
No 36
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=23.39 E-value=31 Score=13.55 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=34.1
Q ss_pred EEEECCEEEEECCCCCCCCCHHHHHHHHC-CCCEEEEEECCCCCEE
Q ss_conf 99989999871773187889999998625-4877999972689812
Q gi|254780326|r 351 SVWFGDVRIANNGEPEINFSQESVRSIVK-KKCVPITVDLQIGNGI 395 (416)
Q Consensus 351 ~i~ig~~~v~~~G~~~~~~~e~~~~~~~~-~~~i~i~idLg~G~~~ 395 (416)
.|+.||..+.-||........+.+.+.++ .+++.+.|....|+.+
T Consensus 58 GL~~GD~Il~VNg~~v~~~~~~ea~~llk~~~~v~l~V~~~~~Pss 103 (104)
T 1wi2_A 58 GLQEGDQVLAVNDVDFQDIEHSKAVEILKTAREISMRVRFFSGPSS 103 (104)
T ss_dssp TCCTTCEEEEETTEECSSCCHHHHHHHHHHSSSEEEEEECCCCSCC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCEEEEEEEECCCCCC
T ss_conf 9999999999999999999799999998669938999997889979
No 37
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=22.59 E-value=24 Score=14.29 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=26.0
Q ss_pred CCCEEEEEECCCCCEEE---------EEEECCCCHHHEECC
Q ss_conf 48779999726898128---------999545875460011
Q gi|254780326|r 380 KKCVPITVDLQIGNGIH---------TVWTCDFSKEYIHFN 411 (416)
Q Consensus 380 ~~~i~i~idLg~G~~~~---------t~~tcDLt~~YV~iN 411 (416)
.++=.+.+|.=.|.|+. .+.||||.++|+++-
T Consensus 250 s~~gdiVLDpF~GSGTT~~aa~~lgR~~Ig~El~~~y~~~a 290 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAAS 290 (323)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHCCCCEEEEECCHHHHHHH
T ss_conf 79999999799998689999998199289997899999999
No 38
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=21.97 E-value=33 Score=13.37 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=21.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 99999987735715665555067886
Q gi|254780326|r 304 ASAKKVALSIANSPLVKTAFASESFG 329 (416)
Q Consensus 304 ~~A~~ia~sIa~S~LvKtA~~G~DpN 329 (416)
..+..+|+.+|..|.|+.|+...|+.
T Consensus 10 ~r~~~~A~~lA~~P~v~~al~~~d~~ 35 (131)
T 1p0z_A 10 QRALIQAMQISAMPELVEAVQKRDLA 35 (131)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCHH
T ss_conf 99999999996797899998768988
No 39
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=21.79 E-value=33 Score=13.34 Aligned_cols=107 Identities=15% Similarity=0.197 Sum_probs=61.3
Q ss_pred EEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999803101889469999948998699983257785343488888723588029999378722341479899999999
Q gi|254780326|r 26 RLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTVRFIA 105 (416)
Q Consensus 26 ~~~~~~aGiK~~~r~DL~li~~~~pa~~AgvFT~N~~~AAPV~~~k~~l~~~~~raivvNSGnANA~TG~~G~~~a~~~~ 105 (416)
++.-+-+-..-..+.||.-++..-+- ..|-..+|++.-+ ++...+..+++-.||.-. |||-+..++++..+
T Consensus 10 ~I~NvVas~~l~~~ldL~~ia~~~~n---~~Y~P~~f~~l~~-----r~~~p~~t~~if~sGki~-~tG~ks~~~a~~a~ 80 (182)
T 1ais_A 10 RIENIVASVDLFAQLDLEKVLDLCPN---SKYNPEEFPGIIC-----HLDDPKVALLIFSSGKLV-VTGAKSVQDIERAV 80 (182)
T ss_dssp EEEEEEEEEECCSCCCHHHHTTTSTT---CBCCTTTCSSEEE-----ECSSSCCEEEECTTSEEE-EEEESSHHHHHHHH
T ss_pred EEEEEEEEEECCCCCCHHHHHHHCCC---CEECCCCCCEEEE-----EECCCCEEEEEECCCEEE-EECCCCHHHHHHHH
T ss_conf 99999999885982159999965899---7887543866999-----978996699997698499-96579889999999
Q ss_pred HHHHHHCC---CC---CCE---EEEECCCCCCCCCCHHHHHHHCC
Q ss_conf 99987649---87---330---88711431022432022221001
Q gi|254780326|r 106 KAVSELIP---CK---EEE---VYVASTGIIGEFLDVALFDGVLS 141 (416)
Q Consensus 106 ~~~a~~l~---~~---~~~---Vl~~STGVIG~~Lp~~ki~~~i~ 141 (416)
+.+.+.|. .+ ..+ .-+-+|+-+|.+++.+.+....+
T Consensus 81 ~k~~~~l~~~g~~~~~~~~~~i~nIva~~~~~~~i~L~~la~~~~ 125 (182)
T 1ais_A 81 AKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLP 125 (182)
T ss_dssp HHHHHHHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHHHHHHST
T ss_pred HHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHCC
T ss_conf 999999985597643467448988888988266113999986424
No 40
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=20.33 E-value=34 Score=13.26 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=27.8
Q ss_pred EEEEEEECCHHCCCCCCEE---EEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 9999850200024345225---889996564399999999998600555414316765
Q gi|254780326|r 181 TINGLAKGAGMIAPDMATT---LAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDT 235 (416)
Q Consensus 181 ~i~GiaKGsGMI~PnMATM---L~fi~TDa~i~~~~L~~~L~~~v~~SFN~IsVDGDt 235 (416)
+|.=+.=|.|-..-.++-. .-++.+| +++..+..+-++.-...++.-...+|.
T Consensus 135 ~vlD~GcG~G~~~~~l~~~~~~~~v~g~D--~s~~~i~~a~~~~~~~~~~~~~~~~d~ 190 (281)
T 3lcv_B 135 TLRDLACGLNPLAAPWMGLPAETVYIASD--IDARLVGFVDEALTRLNVPHRTNVADL 190 (281)
T ss_dssp EEEETTCTTGGGCCTTTTCCTTCEEEEEE--SBHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHHHCCCCEEEEEECH
T ss_conf 69983898888999999749977499965--999999999999986688738998135
Done!