RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780326|ref|YP_003064739.1| bifunctional ornithine
acetyltransferase/N-acetylglutamate synthase protein [Candidatus
Liberibacter asiaticus str. psy62]
(416 letters)
>gnl|CDD|145242 pfam01960, ArgJ, ArgJ family. Members of the ArgJ family catalyse
the first EC:2.3.1.1 and fifth steps EC:2.3.1.35 in
arginine biosynthesis.
Length = 387
Score = 482 bits (1243), Expect = e-137
Identities = 185/391 (47%), Positives = 253/391 (64%), Gaps = 11/391 (2%)
Query: 25 VRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIV 84
R + GIK G+ D+ L+V D PA+ AGVFT + +APV + +L G ARA++V
Sbjct: 1 FRAAGVHAGIKKSGKKDLALIVSDVPATAAGVFTTNKFKAAPVLVSREHLKGGKARAVVV 60
Query: 85 NSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKML 144
NSG ANA TG++G + R +A+ V+EL+ EEV VASTG+IGE L + + ++
Sbjct: 61 NSGNANACTGEQGLEDAREMAELVAELLGIPPEEVLVASTGVIGEPLPMEKIRAGIPALV 120
Query: 145 CDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMATTLAFVV 204
+ D W D+A+A+MTTD + K A R V+I G VTI G+AKG+GMI P+MAT LAF+
Sbjct: 121 AALSADGWEDAARAIMTTDTFPKEAAREVEIGGKTVTIGGIAKGSGMIHPNMATMLAFIT 180
Query: 205 TDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRL 264
TD ISP +LQ L + SFN ITVDGDTST+DT+L+ A G PIT+
Sbjct: 181 TDAAISPELLQKALRRAVDRSFNRITVDGDTSTNDTVLVLANG--AAGNPPITE-GSPDY 237
Query: 265 SLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFA 324
+ F+ AL ++ ++LA Q+V DGEGA+KL+EVTV GAA A+KVA +IANSPLVKTA
Sbjct: 238 AAFQEALTEVCQELAKQIVRDGEGATKLIEVTVTGAASEEDARKVARAIANSPLVKTAI- 296
Query: 325 SESFGW---WGRIVMAVGKSGVLVDRDRLSVWFGDVRIANNGEPEINFSQESVRSIVKKK 381
FG WGRI+ AVG SGV D D++ + FG V + NGEP ++F +E+ +I+K+
Sbjct: 297 ---FGEDPNWGRILAAVGYSGVDFDPDKVDISFGGVLVVENGEP-VDFDEEAASAILKED 352
Query: 382 CVPITVDLQIGNGIHTVWTCDFSKEYIHFNS 412
+ I VDL +G+G T WTCD S +Y+ N+
Sbjct: 353 EITIRVDLGLGDGSATAWTCDLSYDYVKINA 383
>gnl|CDD|73147 cd02152, OAT, Ornithine acetyltransferase (OAT) family; also
referred to as ArgJ. OAT catalyzes the first and fifth
steps in arginine biosynthesis, coupling acetylation of
glutamate with deacetylation of N-acetylornithine, which
allows recycling of the acetyl group in the arginine
biosynthetic pathway. Members of this family may
experience feedback inhibition by L-arginine. The active
enzyme is a heterotetramer of two alpha and two beta
chains, where the alpha and beta chains are the result
of autocatalytic cleavage. OATs found in the clavulanic
acid biosynthesis gene cluster catalyze the fifth step
only, and may utilize acetyl acceptors other than
glutamate..
Length = 390
Score = 439 bits (1131), Expect = e-124
Identities = 184/391 (47%), Positives = 251/391 (64%), Gaps = 5/391 (1%)
Query: 22 IKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARA 81
KG R + A GIK GR D+ L+ D PA+ AGVFT + +APV + +L+ G ARA
Sbjct: 1 PKGFRAAGVAAGIKKSGRKDLALIYSDVPATAAGVFTTNKFKAAPVLVSREHLADGKARA 60
Query: 82 LIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLS 141
++VNSG ANA TG++G + R +A+ V+EL+ EEEV VASTG+IGE L + +
Sbjct: 61 VVVNSGNANACTGEQGLEDAREMAELVAELLGIPEEEVLVASTGVIGEPLPMDKIRAGIP 120
Query: 142 KMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMATTLA 201
+++ ++D W +A+A+MTTD + K A V+I G VTI G+AKG+GMI P+MAT L
Sbjct: 121 ELVASLSEDGWEAAARAIMTTDTFPKEAAVEVEIGGKTVTIGGIAKGSGMIHPNMATMLG 180
Query: 202 FVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSD 261
F+ TD ISP +LQ+ L + SFN ITVDGDTST+DT+LL A G P D
Sbjct: 181 FITTDAAISPELLQDALRRAVDRSFNRITVDGDTSTNDTVLLLANGAAGN---PPISEED 237
Query: 262 KRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKT 321
L F AL ++ DLA Q+V DGEGA+KL+EVTV GAA A+KVA +IANSPLVKT
Sbjct: 238 PDLEEFEEALTEVCLDLAKQIVRDGEGATKLIEVTVTGAASEEDARKVARAIANSPLVKT 297
Query: 322 AFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDVRIANNGEPEINFSQESVRSIVKKK 381
A E WGRI+ AVG SGV D +R+S+ G V + NGEP +++ + + +++K+
Sbjct: 298 AIFGEDPN-WGRILAAVGYSGVEFDPERVSISLGGVLVVENGEP-LDYDEAAASAVMKED 355
Query: 382 CVPITVDLQIGNGIHTVWTCDFSKEYIHFNS 412
+ ITVDL G+G TVW CD + +Y+ N+
Sbjct: 356 EITITVDLGRGDGSATVWGCDLTYDYVKINA 386
>gnl|CDD|31555 COG1364, ArgJ, N-acetylglutamate synthase (N-acetylornithine
aminotransferase) [Amino acid transport and metabolism].
Length = 404
Score = 425 bits (1095), Expect = e-120
Identities = 185/399 (46%), Positives = 257/399 (64%), Gaps = 7/399 (1%)
Query: 15 VSPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNL 74
++ + KG + A GIK G+ D+ L+V + PAS AGVFT + +APVD + NL
Sbjct: 8 IAGGITAPKGFLAAGIAAGIKASGKPDLGLIVSERPASAAGVFTTNKVKAAPVDVSRENL 67
Query: 75 SHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVA 134
+ G RA++VNSG ANA TG++G R +A+AV+E + +EEEV VASTG+IGE L +
Sbjct: 68 ADGKLRAIVVNSGNANACTGEQGLKDAREMAEAVAEELGIEEEEVLVASTGVIGERLPMD 127
Query: 135 LFDGVLSKMLCDAT-DDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIA 193
+ K++ D +D WL++A+A+MTTD K A +I G VTI G+AKG+GMI
Sbjct: 128 KILAGIEKLVSDLGSEDGWLEAAEAIMTTDTVPKQAAVEAEIGGT-VTIGGIAKGSGMIH 186
Query: 194 PDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNF 253
P+MAT LAF+ TD I PA LQ L + +FN ITVDGDTST+DT+LL A G GN
Sbjct: 187 PNMATMLAFITTDAAIEPAALQKALRRAVDKTFNMITVDGDTSTNDTVLLLANGAS-GN- 244
Query: 254 APITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSI 313
IT+ S L+ F+ AL ++ +DLA Q+V DGEGA+KL+EVTV GAA A+ +A +I
Sbjct: 245 PEITEES-PDLAEFKEALTEVCQDLAKQIVRDGEGATKLIEVTVTGAASEEDARVIARAI 303
Query: 314 ANSPLVKTAFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDVRIANNGEPEINFSQES 373
ANSPLVKTA WGRI+ AVG SG VD D++S+ FG + +A++GEP F +E+
Sbjct: 304 ANSPLVKTAVFGSD-PNWGRILAAVGYSGAEVDPDKISISFGGIVVADDGEPL-PFYEEA 361
Query: 374 VRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNS 412
+ + + + I VDL +G+G T W CD + +Y+ N+
Sbjct: 362 ASAYLSQDEITIRVDLGVGDGAATAWGCDLTYDYVRINA 400
>gnl|CDD|37997 KOG2786, KOG2786, KOG2786, Putative glutamate/ornithine
acetyltransferase [Amino acid transport and metabolism].
Length = 431
Score = 236 bits (602), Expect = 1e-62
Identities = 145/407 (35%), Positives = 210/407 (51%), Gaps = 18/407 (4%)
Query: 23 KGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGI---A 79
+G L+ A G+K G+ D+ L+ PA A VFT + +APV + K L
Sbjct: 30 QGFSLNGMASGVKANGKKDLALVTCSRPAVAAAVFTTNVFAAAPVVYSKKVLETSGGKTI 89
Query: 80 RALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGV 139
RA+++NSG ANA TG G + +++ L+ K E V V STG+IG+ L
Sbjct: 90 RAVVINSGCANAVTGDAGYQDAQDCVGSIATLLKVKPESVLVMSTGVIGQRLKKDKILHG 149
Query: 140 LSKMLCDATDD--AWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMA 197
L ++ W +A A+ TTD + K+ + GI+ + G+AKGAGMI P+MA
Sbjct: 150 LPTLVESRGSSVEEWDSAAVAICTTDTFPKLVAVESQVGGIKYRVGGMAKGAGMIHPNMA 209
Query: 198 TTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPIT 257
T L +VTD I + +L SFN I+VDGDTST+DT++ A G P
Sbjct: 210 TLLGVIVTDAPIESDAWRKMLKVAVNRSFNQISVDGDTSTNDTIIALANGASGS---PEI 266
Query: 258 DVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSP 317
+ K + + + + + LA VV DGEGA+K + VTVKGA A A K+A SI+NS
Sbjct: 267 SSNSKEAAQLQACVTAVAQGLAKLVVRDGEGATKFVTVTVKGAETEADAAKIARSISNSS 326
Query: 318 LVKTAFASESFGWWGRIVMAVGKSGVL--VDRDRLSVWFG------DVRIANNGEPEINF 369
LVKTA WGRI+ A G +GV +D+ ++SV F +++ NG P+ N
Sbjct: 327 LVKTAVYGRDAN-WGRILCAAGYAGVSFQMDKLKISVSFILMDSGEPLKLDRNGAPQ-NV 384
Query: 370 SQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSNVQS 416
+ I+ + ++VDL G WTCD S EY+ N + +S
Sbjct: 385 DETRASEILGTVTLDVSVDLGNGPYAIVNWTCDLSYEYVMINGDYRS 431
>gnl|CDD|73146 cd00123, DmpA_OAT, DmpA/OAT superfamily; composed of
L-aminopeptidase D-amidase/D-esterase (DmpA), ornithine
acetyltransferase (OAT) and similar proteins. DmpA is an
aminopeptidase that releases N-terminal D and L amino
acids from peptide substrates. This group represents one
of the rare aminopeptidases that are not metalloenzymes.
DmpA shows similarity in catalytic mechanism to
N-terminal nucleophile (Ntn) hydrolases, which are
enzymes that catalyze the cleavage of amide bonds
through the nucleophilic attack of the side chain of an
N-terminal serine, threonine, or cysteine. OAT catalyzes
the first and fifth steps in arginine biosynthesis,
coupling acetylation of glutamate with deacetylation of
N-acetylornithine, which allows recycling of the acetyl
group in the arginine biosynthetic pathway. The
superfamily also contains an enzyme, endo-type
6-aminohexanoate-oligomer hydrolase, that have been
shown to be involved in nylon degradation. Proteins in
this superfamily undergo autocatalytic cleavage of an
inactive precursor at the site immediately upstream to
the catalytic nucleophile..
Length = 286
Score = 53.6 bits (128), Expect = 9e-08
Identities = 74/297 (24%), Positives = 104/297 (35%), Gaps = 46/297 (15%)
Query: 22 IKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARA 81
+GV + A +G GRD ++ PA+V+ VFTR C+ ++ G R
Sbjct: 1 PRGVVVGTAPVGEADDGRDGFTVIASTAPATVSVVFTRGR---FAGPLCREAVAGGQFRH 57
Query: 82 LIVNSGIANAFTGKRGRDTVR-FIAKAVSELIPCKEEEVYVASTGIIGE-----FLDVAL 135
+V N A+ + +E E +AST IG A
Sbjct: 58 GVVVLA-RNEGEENAREVREAVARARGLPRTGFAEEGEXLIASTYDIGRQYTPXESIRAH 116
Query: 136 FDGVLSKMLCDATDDAWLDSAKAMM--TTDRYAKVAVRTVDIDGIRVTINGLAKGAGM-- 191
L D + A TTD A R+V TI + KG G
Sbjct: 117 LRTALWPAGEGGFDRGRASAGAARAIXTTDTGPGEARRSVG----GATIVAIVKGNGXLE 172
Query: 192 ---------------------IAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSIT 230
+ PD AT + F TD + PA L + L+ + +FN ++
Sbjct: 173 IVDRAGTVVRGQEAFAEQVPPVTPDXATLITFFATDARLDPAEL-DRLARVXDRTFNRVS 231
Query: 231 VDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRLSLFRPA--LFDLLKDLALQVVCD 285
+D DTST DT + FAT G T R L A + AL V D
Sbjct: 232 IDTDTSTGDTAVAFAT----GLAGLPTTPGSSRGRLEVDAGEFEEAAHTAALAAVKD 284
>gnl|CDD|34633 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit
SFB2/subunit SFB3 [Intracellular trafficking and
secretion].
Length = 861
Score = 28.4 bits (63), Expect = 3.3
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 92 FTGKRGRDTVRFIAKAVSELIPCKEEEVYV---ASTGI-----IGEFLDVALFDGVLSKM 143
F+ R D + VS L E + STG+ G F + + S M
Sbjct: 487 FSATRPNDATKLANDLVSHLSMEIGYEAVMRVRCSTGLRVSSFYGNFFNRSSDLCAFSTM 546
Query: 144 LCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIR 179
D + + +MT+D Y +VA+ DG R
Sbjct: 547 PRDTSLLVEFSIDEKLMTSDVYFQVALLYTLNDGER 582
>gnl|CDD|30971 COG0626, MetC, Cystathionine beta-lyases/cystathionine
gamma-synthases [Amino acid transport and metabolism].
Length = 396
Score = 28.6 bits (64), Expect = 3.4
Identities = 35/130 (26%), Positives = 47/130 (36%), Gaps = 33/130 (25%)
Query: 135 LFDGVLSKMLCDAT--DDAWLDSAKAMMTTDRYAKVAVRT--------VDIDGIRVTING 184
LF+ +L K + T D ++ +A + V + T DI I
Sbjct: 118 LFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIA----R 173
Query: 185 LAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSIT--VDGDTSTSDTLL 242
LAK G A VV D + VLQ L GA+ +S T + G SD L
Sbjct: 174 LAKAYG----------ALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGH---SDVLG 220
Query: 243 LFATGTVLGN 252
G VL
Sbjct: 221 ----GVVLTP 226
>gnl|CDD|145563 pfam02489, Herpes_glycop_H, Herpesvirus glycoprotein H.
Herpesvirus glycoprotein H (gH) is a virion associated
envelope glycoprotein. Complex formation between gH and
gL has been demonstrated in both virions and infected
cells.
Length = 655
Score = 27.7 bits (62), Expect = 6.4
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 210 SPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVL 250
V N+ + + D + LLL GTV+
Sbjct: 586 DIDVQLNLFAPD------NSFFDSFNPHTHYLLLMPNGTVV 620
>gnl|CDD|35841 KOG0622, KOG0622, KOG0622, Ornithine decarboxylase [Amino acid
transport and metabolism].
Length = 448
Score = 27.2 bits (60), Expect = 9.1
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 34 IKYVGRDDVFLMVFDNPASVAGVFTRSS--------CPSAPVDFCKGNLSHGI 78
IKY + V +M FDN + V C+ NL G
Sbjct: 138 IKYAAKHGVSVMTFDNEEELEKVAKSHPNANLLLRIATDDSTATCRLNLKFGC 190
>gnl|CDD|33004 COG3191, DmpA, L-aminopeptidase/D-esterase [Amino acid transport
and metabolism / Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 348
Score = 27.2 bits (60), Expect = 9.4
Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 6/123 (4%)
Query: 171 RTVDIDGIRVTINGLAKGAGMIAPD--MATTLAFVVTDINISPAVLQNILSEGAEYSFNS 228
RT+ + G V +G A TT+ V TD ++ A L+ + + +
Sbjct: 205 RTLLLWGAPVGFDGRGPPPRAEAGGDEKGTTIGVVATDAPLTKAQLKRLARRAHDGLART 264
Query: 229 ITVDGDTSTSDTLLLFATGTVL----GNFAPITDVSDKRLSLFRPALFDLLKDLALQVVC 284
DT F+TG + ++D + A + +++ L +
Sbjct: 265 GRPAHTGLDGDTAFAFSTGNHAEPPEADVPAALALNDDLIDPLFAAAAEAVEEAVLNALL 324
Query: 285 DGE 287
E
Sbjct: 325 AAE 327
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.136 0.398
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,731,718
Number of extensions: 245486
Number of successful extensions: 589
Number of sequences better than 10.0: 1
Number of HSP's gapped: 570
Number of HSP's successfully gapped: 13
Length of query: 416
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 320
Effective length of database: 4,189,273
Effective search space: 1340567360
Effective search space used: 1340567360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)