RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780326|ref|YP_003064739.1| bifunctional ornithine
acetyltransferase/N-acetylglutamate synthase protein [Candidatus
Liberibacter asiaticus str. psy62]
(416 letters)
>1vz6_A Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine,
N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces
clavuligerus} SCOP: d.154.1.2 PDB: 1vz7_A 1vz8_A
Length = 393
Score = 278 bits (713), Expect = 1e-75
Identities = 137/402 (34%), Positives = 208/402 (51%), Gaps = 21/402 (5%)
Query: 16 SPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLS 75
S P +G + A +G+ GRDD ++ PA+V+ VFTRS V C+ ++
Sbjct: 4 STPKTP-RGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVA 62
Query: 76 HGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVAL 135
G AR ++V + AN TG G + R + +AV+ + E E+ +ASTG+IG +
Sbjct: 63 DGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMES 122
Query: 136 FDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPD 195
L + A + + +A+A+MTTD + V + T+ G+AKG GM+ PD
Sbjct: 123 IREHLKTLEWPAGEGGFDRAARAIMTTDTR----PKEVRVSVGGATLVGIAKGVGMLEPD 178
Query: 196 MATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAP 255
MAT L F TD + PA + + +FN++++D DTSTSDT +LFA G A
Sbjct: 179 MATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAG 238
Query: 256 ITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIAN 315
F AL L + DGEGA+KL+EV V GA D A AK+V ++ N
Sbjct: 239 E----------FEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVN 288
Query: 316 SPLVKTAFASESFGWWGRIVMAVGKS--GVLVDRDRLSVWFGDVRIA---NNGEPEINFS 370
SPLVKTA WGR+ MA+GK +D++R+++ FG+V + G+ +
Sbjct: 289 SPLVKTAVHGCDPN-WGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDAL 347
Query: 371 QESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNS 412
+ +V ++ V I +DL I +G TV+ CD ++ Y+ NS
Sbjct: 348 RAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNS 389
>3it4_B Arginine biosynthesis bifunctional protein ARGJ beta chain;
ornithine acetyltransferase, structural genomics; 1.70A
{Mycobacterium tuberculosis} PDB: 3it6_B
Length = 205
Score = 194 bits (494), Expect = 3e-50
Identities = 68/215 (31%), Positives = 99/215 (46%), Gaps = 14/215 (6%)
Query: 198 TTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPIT 257
T L + TD PA L+ L A +F+ + +DG ST+DT+LL ++G
Sbjct: 1 TMLCVLTTDAAAEPAALERALRRAAAATFDRLDIDGSCSTNDTVLLLSSGASE------- 53
Query: 258 DVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSP 317
+ A+ + DL Q+ D EG +K + VTV GAA A A IA
Sbjct: 54 --IPPAQADLDEAVLRVCDDLCAQLQADAEGVTKRVTVTVTGAATEDDALVAARQIARDS 111
Query: 318 LVKTAFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDVRIANNGEPEINFSQESVRSI 377
LVKTA WGR++ AVG + + +D DR+SV F + +G +
Sbjct: 112 LVKTALFGSDPN-WGRVLAAVGMAPITLDPDRISVSFNGAAVCVHGVGAPGAREV----D 166
Query: 378 VKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNS 412
+ + ITVDL +G+G + T D S Y+ NS
Sbjct: 167 LSDADIDITVDLGVGDGQARIRTTDLSHAYVEENS 201
>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus
halodurans}
Length = 208
Score = 179 bits (454), Expect = 1e-45
Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 2/177 (1%)
Query: 22 IKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNL-SHGIAR 80
KG G+K R D+ +V + PAS A V+T + +AP+ + ++ G +
Sbjct: 33 AKGFSAVGIHTGVKR-KRKDLGAIVCEVPASSAAVYTLNKVQAAPLKVTQESIAVEGKLQ 91
Query: 81 ALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVL 140
A+IVNSGIANA TGKRG D + +E E V V STG+IGEFL + + +
Sbjct: 92 AMIVNSGIANACTGKRGLDDAYTMRAVGAETFHIPEHYVAVTSTGVIGEFLPMDVITNGI 151
Query: 141 SKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMA 197
++ +AT + +A++TTD K ++G VT+ G+AKG+GMI P+MA
Sbjct: 152 RQLKPEATIEGAHAFNEAILTTDTVEKHTCYQTIVNGKTVTVGGVAKGSGMIHPNMA 208
>1vra_B Arginine biosynthesis bifunctional protein ARGJ; 10175521,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus
halodurans}
Length = 215
Score = 174 bits (443), Expect = 3e-44
Identities = 82/215 (38%), Positives = 113/215 (52%), Gaps = 4/215 (1%)
Query: 198 TTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPIT 257
T L+FV TD NI LQ LS +FN ITVDGDTST+D +++ A+G
Sbjct: 1 TMLSFVTTDANIDHGHLQGALSAITNETFNRITVDGDTSTNDMVVVMASGLAEN---ETL 57
Query: 258 DVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSP 317
+ F AL +DLA Q+ DGEGA+KL+EV V GAA+ A VA I S
Sbjct: 58 TPEHPDWANFYKALQLACEDLAKQIARDGEGATKLIEVEVTGAANDQEAGMVAKQIVGSD 117
Query: 318 LVKTAFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDVRIANNGEPEINFSQESVRSI 377
LVKTA W GRI+ A+G SG V+++ + + G + EP +E+ +
Sbjct: 118 LVKTAIYGADANW-GRIICAIGYSGCEVNQETIDIAIGPIVTLKQSEPTGFSEEEATAYL 176
Query: 378 VKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNS 412
+ V I+V+L IGNG W CD + +Y+ N+
Sbjct: 177 KEADPVKISVNLHIGNGTGKAWGCDLTYDYVRINA 211
>3it4_A Arginine biosynthesis bifunctional protein ARGJ alpha chain;
ornithine acetyltransferase, structural genomics; 1.70A
{Mycobacterium tuberculosis} PDB: 3it6_A
Length = 199
Score = 162 bits (412), Expect = 9e-41
Identities = 63/183 (34%), Positives = 92/183 (50%), Gaps = 11/183 (6%)
Query: 23 KGVRLSAAALGIKYVGRDDVFLMVFDNP-ASVAGVFTRSSCPSAPVDFCKGNLSHGIARA 81
G R + A GIK G D+ L+ + P + AGVFTR+ +APV + + L+ G RA
Sbjct: 20 AGFRAAGVAAGIKASGALDLALVFNEGPDYAAAGVFTRNQVKAAPVLWTQQVLTTGRLRA 79
Query: 82 LIVNSGIANAFTGKRGRDTVRFIAKAVSELI-----PCKEEEVYVASTGIIGEFLDVALF 136
+I+NSG ANA TG G A+AV+ + EV V STG+IG+ L +
Sbjct: 80 VILNSGGANACTGPAGFADTHATAEAVAAALSDWGTETGAIEVAVCSTGLIGDRLPMDKL 139
Query: 137 DGVLSKML--CDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAP 194
++ ++ ++A A+MTTD K T+ G+AKGAGM+AP
Sbjct: 140 LAGVAHVVHEMHGGLVGGDEAAHAIMTTDNVPKQVAL---HHHDNWTVGGMAKGAGMLAP 196
Query: 195 DMA 197
+A
Sbjct: 197 SLA 199
>2v4i_B Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme,
NTN hydrolase, acyltransferase, ornithine acetyl
transferase; 2.2A {Streptomyces clavuligerus} PDB:
2vzk_D* 2vzk_B*
Length = 213
Score = 161 bits (407), Expect = 4e-40
Identities = 75/218 (34%), Positives = 111/218 (50%), Gaps = 16/218 (7%)
Query: 200 LAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDV 259
L F TD + PA + + +FN++++D DTSTSDT +LFA
Sbjct: 3 LTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFAN----------GLA 52
Query: 260 SDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLV 319
+ F AL L + DGEGA+KL+EV V GA D A AK+V ++ NSPLV
Sbjct: 53 GEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLV 112
Query: 320 KTAFASESFGWWGRIVMAVGKSGVLVDR--DRLSVWFGDVRI---ANNGEPEINFSQESV 374
KTA WGR+ MA+GK D +R+++ FG+V + G+ + + +V
Sbjct: 113 KTAVHGCDPN-WGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAV 171
Query: 375 RSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNS 412
++ V I +DL I +G TV+ CD ++ Y+ NS
Sbjct: 172 AEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNS 209
>2v4i_A Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, acyl
enzyme, NTN hydrolase, acyltransferase, ornithine acetyl
transferase; 2.2A {Streptomyces clavuligerus} PDB:
2vzk_A*
Length = 173
Score = 151 bits (383), Expect = 2e-37
Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 4/175 (2%)
Query: 23 KGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARAL 82
+G + A +G+ GRDD ++ PA+V+ VFTRS V C+ ++ G AR +
Sbjct: 3 RGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGV 62
Query: 83 IVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSK 142
+V + AN TG G + R + +AV+ + E E+ +ASTG+IG + L
Sbjct: 63 VVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKT 122
Query: 143 MLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMA 197
+ A + + +A+A+MTTD K V + T+ G+AKG GM+ PDMA
Sbjct: 123 LEWPAGEGGFDRAARAIMTTDTRPK----EVRVSVGGATLVGIAKGVGMLEPDMA 173
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 65.7 bits (160), Expect = 2e-11
Identities = 87/507 (17%), Positives = 149/507 (29%), Gaps = 202/507 (39%)
Query: 1 MLPISCLPFMLQSH--VSPVLL-PIKGVRLSAAALGIKYVGRDDVFLMVF---------- 47
M S P L SH + VLL P A ++ + F +
Sbjct: 1 MDAYSTRPLTL-SHGSLEHVLLVPT---ASFFIASQLQ-----EQFNKILPEPTEGFAAD 51
Query: 48 DNPASVAGVFTR-------SSCPSAPV---------------DFCKGNLSHGIARALI-- 83
D P + A + + PS + +GN H +A L+
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 84 -------VNSGIANAFTGKR--GRDTVRFIAKAVSELIP--------------------- 113
I N T + R F K+ S L
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKR---PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 114 CKEE--EVYVASTGIIGEFLDVALFDGVLSKMLCDATDDA------------WLDSAKAM 159
EE ++Y ++G+ + + LS+ L T DA WL++
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFS--AETLSE-LIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 160 MTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMATTLA-FVVT--DINISPAVLQN 216
D + + + G+ LA +VVT + +P L++
Sbjct: 226 PDKDYLLSIPIS--------CPLIGV------------IQLAHYVVTAKLLGFTPGELRS 265
Query: 217 ILSEGAEYSFNS--ITVDGDTSTSDTL------------LLFATGTVLGNFAPITDVSDK 262
L GA + +S + + +D+ +LF G P
Sbjct: 266 YLK-GA--TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP------- 315
Query: 263 RLSLFRPALFDLLKDLALQVVCDGEGA-SKLLEVTVKGAADCA-------------SAKK 308
SL P++ L+D + + EG S +L ++ + K+
Sbjct: 316 NTSL-PPSI---LED----SLENNEGVPSPML--SISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 309 VALSIANSPLVKTAFASESFGWWGRIVMAVG--KSGVLVDRDRLSVWFGDVRIANNG--E 364
V +S+ N V++ G +S L L++ + A +G +
Sbjct: 366 VEISLVNGA---KNL-----------VVS-GPPQS--LY---GLNLTLRKAK-APSGLDQ 404
Query: 365 PEINFSQESVRSIVKKKCV----PITV 387
I FS+ R K K P+
Sbjct: 405 SRIPFSE---R---KLKFSNRFLPVAS 425
Score = 44.5 bits (105), Expect = 4e-05
Identities = 29/139 (20%), Positives = 42/139 (30%), Gaps = 67/139 (48%)
Query: 2 LPISCLPFMLQSHVSPVL----------LPIKGVRLSAAALGIKYVGRDDVFLMVFDNPA 51
LP++ PF H S +L L V +A + I V+D
Sbjct: 421 LPVA-SPF----H-SHLLVPASDLINKDLVKNNVSFNAKDIQIP----------VYDT-- 462
Query: 52 SVAGVFT----RSSCPS-----------APVDF---CKGNLSHGIARALIVN------SG 87
F R S PV + + +H I++ SG
Sbjct: 463 -----FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH------ILDFGPGGASG 511
Query: 88 IANAFTGKRGRD-T-VRFI 104
+ T R +D T VR I
Sbjct: 512 LGV-LT-HRNKDGTGVRVI 528
Score = 41.1 bits (96), Expect = 5e-04
Identities = 67/249 (26%), Positives = 94/249 (37%), Gaps = 84/249 (33%)
Query: 199 TLAFVVTDINISPAVLQNI-LSEGAE--------YS---FNSITVDG------------D 234
T F + DI I+ V N+ + G E YS F +I VDG +
Sbjct: 1656 TYGFSILDIVINNPV--NLTIHFGGEKGKRIRENYSAMIFETI-VDGKLKTEKIFKEINE 1712
Query: 235 TSTSDTL-----LLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGA 289
STS T LL AT + L+L A F+ LK L + D A
Sbjct: 1713 HSTSYTFRSEKGLLSAT-----------QFTQPALTLMEKAAFEDLKSKGL-IPADATFA 1760
Query: 290 SKLLEVTVKGA-ADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVLVDRD 348
L G A AS V +SI + LV+ F + G + M V V RD
Sbjct: 1761 GHSL-----GEYAALASLADV-MSIES--LVEVVF------YRG-MTMQVA-----VPRD 1800
Query: 349 RLSVW-FGDVRIANNGEPEINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEY 407
L +G + I N G +FSQE+++ +V++ G T W E
Sbjct: 1801 ELGRSNYGMIAI-NPGRVAASFSQEALQYVVERV------------GKRTGWLV----EI 1843
Query: 408 IHFN-SNVQ 415
+++N N Q
Sbjct: 1844 VNYNVENQQ 1852
Score = 38.8 bits (90), Expect = 0.002
Identities = 75/420 (17%), Positives = 128/420 (30%), Gaps = 173/420 (41%)
Query: 15 VS-PVLLPIKGV------RLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPV 67
+S P+ P+ GV ++A LG P + ++
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGF--------------TPGELRSYLKGAT------ 271
Query: 68 DFCKGNLSHGIARALIVNSGIANAFTGKRGRDT-VRFIA---KAVSEL--IPCKEEEVYV 121
G+ S G+ + IA D+ F KA++ L I + E Y
Sbjct: 272 ----GH-SQGL----VTAVAIAET-------DSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 122 AST---GII------GEFLDVALFDGVLSKMLC--DATDDA---WLDSAKAMMTTDRYAK 167
++ I+ E GV S ML + T + +++ + + + +
Sbjct: 316 NTSLPPSILEDSLENNE--------GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 168 VAVRTVDIDGIRVTINGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFN 227
+++ +NG VV+ P L Y N
Sbjct: 368 ISL-----------VNG---------AK-----NLVVSG---PPQSL---------YGLN 390
Query: 228 S----ITVDG--DTST---SDTLLLFATGTVLGNFAPITDV---SDKRLSLFRPALFDLL 275
D S S+ L F+ F P+ S L PA +
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSN-----RFLPVA-SPFHS----HLLVPASDLIN 440
Query: 276 KDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVK------------TAF 323
KDL + +K +++ V D + + ++ SI+ +V T F
Sbjct: 441 KDLVKN---NVSFNAKDIQIPVYDTFDGSDLRVLSGSISER-IVDCIIRLPVKWETTTQF 496
Query: 324 -ASE--SFGWWGRIVMAVGKSG--VLVDRDRLSVWFGD---VRI------ANNGEPEINF 369
A+ FG G G SG VL R++ D VR+ N + + F
Sbjct: 497 KATHILDFG-PG------GASGLGVLTHRNK------DGTGVRVIVAGTLDINPDDDYGF 543
>1b65_A DMPA, protein (aminopeptidase); hydrolase, peptide degradation, NTN
hydrolase; 1.82A {Ochrobactrum anthropi} SCOP: d.154.1.1
Length = 375
Score = 30.7 bits (69), Expect = 0.69
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
Query: 175 IDGIRVTINGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGD 234
I G+ V + + + + + TD+ + P L+ L+ A G
Sbjct: 227 IAGVPVGQHMRDGTPQSQLQERGSIIVVLATDLPLMPHQLKR-LARRASIGIGRNGTPGG 285
Query: 235 TSTSDTLLLFATGTVLG------NFAPITDVSDKRLS-LFRPA 270
++ D + F+T F + V+D+ L ++ A
Sbjct: 286 NNSGDIFIAFSTANQRPMQHRSAPFLDVEMVNDEPLDTVYLAA 328
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.0 bits (66), Expect = 0.94
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 289 ASKLLEVTVKGAADCASAKKVALSI 313
A K L+ ++K AD SA AL+I
Sbjct: 21 ALKKLQASLKLYAD-DSAP--ALAI 42
>2drh_A PH0078 protein, 361AA long hypothetical D-aminopeptidase;
structural genomics, NPPSFA; 2.10A {Pyrococcus
horikoshii OT3}
Length = 361
Score = 28.8 bits (64), Expect = 2.2
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 183 NGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLL 242
L G + + + TD ++ L +++ A + D +
Sbjct: 224 LELKNWPGRGGEGKGSIIMIIATDAPLTGRQLNR-VAKRAIVGLARTGGYAYNGSGDIAV 282
Query: 243 LFATGTVLG----NFAPITDVSDKRLS-LFRPA 270
F+T + I + D +S LF+
Sbjct: 283 AFSTANRIKHYEKEVIEIKALPDSVISPLFKAT 315
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 28.6 bits (64), Expect = 2.4
Identities = 10/77 (12%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 318 LVKTAFASESFGWWGRIVMAVGKSGVLVDR-------DRLSVWFGDVRIANNGEPEINFS 370
+ K+ A++++G+ V G + V+ + + GD + N +
Sbjct: 12 IEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALN 71
Query: 371 QESVRSIVKKKCVPITV 387
++ + + + + V
Sbjct: 72 SSMLKDFLSQPSLGLLV 88
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.136 0.398
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,450,804
Number of extensions: 155656
Number of successful extensions: 410
Number of sequences better than 10.0: 1
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 16
Length of query: 416
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 321
Effective length of database: 3,390,050
Effective search space: 1088206050
Effective search space used: 1088206050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)