HHsearch alignment for GI: 254780327 and conserved domain: COG0513
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].
Probab=99.03 E-value=6.9e-08 Score=83.76 Aligned_cols=321 Identities=24% Similarity=0.294 Sum_probs=190.4
Q ss_pred CCCCHHHHHHHHHHCCCC--EEEECCCCCHHHHHHHHHHHHHHC--CCC----CEEECCCCHHHHHHHHHHHHHHHHH-C
Q ss_conf 768447999999970794--506733680689999999998607--999----5697469277387599999999882-9
Q gi|254780327|r 84 MRPFDVQLLGGMILHKGC--VAEMKTGEGKTLAAVLPVYLNALS--GKG----VHVVTVNDYLARRDSNTMSAIYKFL-G 154 (890)
Q Consensus 84 ~~~~dvQl~g~~~l~~g~--iaem~TGEGKTL~a~l~~~lnal~--g~~----vhvvTvNdyLA~RDa~~m~~~y~~l-g 154 (890)
T Consensus 50 ~~pt~IQ~~~iP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~-i~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~ 128 (513)
T COG0513 50 EEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQK-ILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGG 128 (513)
T ss_pred CCCCHHHHHHCHHHHCCCCEEEECCCCCHHHHHHHHHHHHH-HHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 99898999658776369997998689871789999999999-74004557775699779999999999999999862458
Q ss_pred CCEEEECCCCCHHHHHHHC--CCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHCCCEEECCCC
Q ss_conf 4367635987988997402--56353344343211122143200002210266743886120354564302421523887
Q gi|254780327|r 155 LSTGVVFHDLSDDKRRAAY--ACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPV 232 (890)
Q Consensus 155 lsvg~~~~~~~~~~r~~~Y--~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLiDeartPLiIsg~~ 232 (890)
T Consensus 129 ~~~~~i~GG~~~~~q~~~l~~g~~ivVaTPGRll-----D~i~~~--~l~l~~v~~lVlDEADrmld~------------ 189 (513)
T COG0513 129 LRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLL-----DLIKRG--KLDLSGVETLVLDEADRMLDM------------ 189 (513)
T ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEEECCCHHH-----HHHHCC--CCCCCCEEEEEECCHHHHCCC------------
T ss_conf 4299998998989999987249989997960899-----998648--855465018996761766388------------
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 65247878743454430135514414444322014679999863101688452475760013389999999999998526
Q gi|254780327|r 233 EDHSDLYRTIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHTLFLR 312 (890)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~dy~id~~~~~v~lt~~G~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~ 312 (890)
T Consensus 190 ----gf~~~i~~I~~~~p~~~qt---llfSAT~~~~i~~l~~~~l---------------------------------~- 228 (513)
T COG0513 190 ----GFIDDIEKILKALPPDRQT---LLFSATMPDDIRELARRYL---------------------------------N- 228 (513)
T ss_pred ----CCHHHHHHHHHHCCCCCEE---EEEEECCCHHHHHHHHHHC---------------------------------C-
T ss_conf ----7689999999738977489---9998248989999999973---------------------------------6-
Q ss_pred CCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHH
Q ss_conf 97316108937897554585156862112348999999730248431256643488998303200001343054899999
Q gi|254780327|r 313 NRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELA 392 (890)
Q Consensus 313 d~~Yiv~~~~v~ivDe~TGr~~~gr~~~~GlhQaieaKe~v~i~~e~~t~a~it~qn~Fr~y~kl~GmTGTa~te~~Ef~ 392 (890)
T Consensus 229 --~p~-----~i~v~---------------------------~~~~~~~~~~i~q-~~~--------------------- 252 (513)
T COG0513 229 --DPV-----EIEVS---------------------------VEKLERTLKKIKQ-FYL--------------------- 252 (513)
T ss_pred --CCC-----EEEEC---------------------------CCCCCCCCCCCEE-EEE---------------------
T ss_conf --880-----79964---------------------------3223353004707-999---------------------
Q ss_pred HHHCCCEEEECCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 87199679807899622430203422377889999999999997409907986111678999999998607710223102
Q gi|254780327|r 393 NIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNA 472 (890)
Q Consensus 393 ~iY~l~v~~iPtnkp~~r~d~~d~v~~t~~~k~~ai~~~i~~~~~~grpvLvgt~sve~Se~ls~~L~~~~~~~h~vLNA 472 (890)
T Consensus 253 --------~v~----------------~~~~k~~~L~~ll~~-~~~~-~~IVF~~tk~~~~~l~~~l~~~g~-~~~~lhG 305 (513)
T COG0513 253 --------EVE----------------SEEEKLELLLKLLKD-EDEG-RVIVFVRTKRLVEELAESLRKRGF-KVAALHG 305 (513)
T ss_pred --------EEC----------------CHHHHHHHHHHHHHC-CCCC-EEEEEECCHHHHHHHHHHHHHCCC-EEEEEEC
T ss_conf --------808----------------567799999999827-8888-399995767769999999997896-5999738
Q ss_pred H--HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 2--47788888753055870488750244665540276755788865113575530089999999987764333454076
Q gi|254780327|r 473 L--YHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAGG 550 (890)
Q Consensus 473 k--~~~~Ea~Iia~AG~~g~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GG 550 (890)
T Consensus 306 ~l~q~~R~~~l~~F~~g~~~iLVaTDvaaRGiDi~-------------------------------------------~v 342 (513)
T COG0513 306 DLPQEERDRALEKFKDGELRVLVATDVAARGLDIP-------------------------------------------DV 342 (513)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCC-------------------------------------------CC
T ss_conf 89988999999999759989899806544689966-------------------------------------------67
Q ss_pred CEEEEECCCCCH--HHHHHHCCCCCCCCCCCCEEEEEEC--CCHHHH
Q ss_conf 279982677532--3355420543456686723899842--301454
Q gi|254780327|r 551 LYVISTERHESR--RIDNQLRGRSGRQGDPGRSKFYLSL--QDDLMR 593 (890)
Q Consensus 551 L~Vigterhesr--Rid~QlrGRagRQGdpG~s~f~~Sl--eD~l~r 593 (890)
T Consensus 343 ~~VinyD~p~~~e~yvHR--iGRTgRaG~~G~ai~fv~~~~e~~~l~ 387 (513)
T COG0513 343 SHVINYDLPLDPEDYVHR--IGRTGRAGRKGVAISFVTEEEEVKKLK 387 (513)
T ss_pred CEEEECCCCCCCCCCCCC--CCCCCCCCCCCEEEEEECCHHHHHHHH
T ss_conf 479978799980413173--453434899872799855623499999