HHsearch alignment for GI: 254780327 and conserved domain: COG0514

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair].
Probab=98.35  E-value=0.00072  Score=50.97  Aligned_cols=321  Identities=20%  Similarity=0.226  Sum_probs=184.3

Q ss_pred             HHHHCC---CCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             576608---76844799999997079450673368068999999999860799956974692773875999999998829
Q gi|254780327|r   78 ARRTLG---MRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLG  154 (890)
Q Consensus        78 ~~R~lg---~~~~dvQl~g~~~l~~g~iaem~TGEGKTL~a~l~~~lnal~g~~vhvvTvNdyLA~RDa~~m~~~y~~lg  154 (890)
T Consensus         9 L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--~G--~T-LVVSPLiSLM~DQ-V~~-l~~~G   81 (590)
T COG0514           9 LKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--EG--LT-LVVSPLISLMKDQ-VDQ-LEAAG   81 (590)
T ss_pred             HHHHHCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHC--CC--CE-EEECCHHHHHHHH-HHH-HHHCC
T ss_conf             999709130388889999999658867998538987106743678865--99--78-9978568889999-999-99759


Q ss_pred             CCEEEECCCCCHHHHHHHCC------CCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHCCCEEE
Q ss_conf             43676359879889974025------635334434321112214320000221026674388612035456430242152
Q gi|254780327|r  155 LSTGVVFHDLSDDKRRAAYA------CDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLII  228 (890)
Q Consensus       155 lsvg~~~~~~~~~~r~~~Y~------~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLiDeartPLiI  228 (890)
T Consensus        82 i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L----------------------------------  127 (590)
T COG0514          82 IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELL----------------------------------  127 (590)
T ss_pred             CEEEHHHCCCCHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHH----------------------------------
T ss_conf             6520442436787799999998649645999881363176899999----------------------------------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             38876524787874345443013551441444432201467999986310168845247576001338999999999999
Q gi|254780327|r  229 SGPVEDHSDLYRTIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHT  308 (890)
Q Consensus       229 sg~~~~~~~~~~~~~~~~~~l~~~dy~id~~~~~v~lt~~G~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~A~~  308 (890)
T Consensus       128 ------------------~~~~i~l~vIDEA------------HCiSqW--------GhdFRP~Y~~-------------  156 (590)
T COG0514         128 ------------------KRLPISLVAIDEA------------HCISQW--------GHDFRPDYRR-------------  156 (590)
T ss_pred             ------------------HHCCCCEEEECHH------------HHHHHC--------CCCCCHHHHH-------------
T ss_conf             ------------------7088756996217------------777641--------7743776899-------------


Q ss_pred             HHHCCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCHH-H
Q ss_conf             852697316108937897554585156862112348999999730248431256643488998303200001343054-8
Q gi|254780327|r  309 LFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTAST-E  387 (890)
Q Consensus       309 ~~~~d~~Yiv~~~~v~ivDe~TGr~~~gr~~~~GlhQaieaKe~v~i~~e~~t~a~it~qn~Fr~y~kl~GmTGTa~t-e  387 (890)
T Consensus       157 -------------------------------------lg~l~~~~~-------------------~~p~~AlTATA~~~v  180 (590)
T COG0514         157 -------------------------------------LGRLRAGLP-------------------NPPVLALTATATPRV  180 (590)
T ss_pred             -------------------------------------HHHHHHHCC-------------------CCCEEEEECCCCHHH
T ss_conf             -------------------------------------999985179-------------------997799737898678


Q ss_pred             HHHHHHHHCC---CEEEECCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCC
Q ss_conf             9999987199---6798078996224302034223778899999999999974099079861116789999999986077
Q gi|254780327|r  388 AEELANIYNL---DVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKF  464 (890)
Q Consensus       388 ~~Ef~~iY~l---~v~~iPtnkp~~r~d~~d~v~~t~~~k~~ai~~~i~~~~~~grpvLvgt~sve~Se~ls~~L~~~~~  464 (890)
T Consensus       181 ~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~--~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~  255 (590)
T COG0514         181 RDDIREQLGLQDANIFRGSFDRPNLALKVVEKG--EPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGI  255 (590)
T ss_pred             HHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCC--CHHHHHHHHHH---HCCCCCCCEEEEEEEHHHHHHHHHHHHHCCC
T ss_conf             999999846788664871589852345564256--47888999874---1324689728999337759999999997797


Q ss_pred             CHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             1022310224778888875305--58704887502446655402767557888651135755300899999999877643
Q gi|254780327|r  465 TKFQILNALYHEKEAYIISQAG--IPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLK  542 (890)
Q Consensus       465 ~~h~vLNAk~~~~Ea~Iia~AG--~~g~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (890)
T Consensus       256 -~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKp-------------------------------------  297 (590)
T COG0514         256 -SAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKP-------------------------------------  297 (590)
T ss_pred             -CEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC-------------------------------------
T ss_conf             -257751898899999999997169986899964624776788-------------------------------------


Q ss_pred             HHHHHCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHH
Q ss_conf             33454076279982677532335542054345668672389984230145420
Q gi|254780327|r  543 EKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIF  595 (890)
Q Consensus       543 ~~v~~~GGL~VigterhesrRid~QlrGRagRQGdpG~s~f~~SleD~l~r~F  595 (890)
T Consensus       298 ------dVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~  344 (590)
T COG0514         298 ------DVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRY  344 (590)
T ss_pred             ------CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHH
T ss_conf             ------84079980699898999999713567877021788606300799999