HHsearch alignment for GI: 254780327 and conserved domain: COG0514
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair].
Probab=98.35 E-value=0.00072 Score=50.97 Aligned_cols=321 Identities=20% Similarity=0.226 Sum_probs=184.3
Q ss_pred HHHHCC---CCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 576608---76844799999997079450673368068999999999860799956974692773875999999998829
Q gi|254780327|r 78 ARRTLG---MRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLG 154 (890)
Q Consensus 78 ~~R~lg---~~~~dvQl~g~~~l~~g~iaem~TGEGKTL~a~l~~~lnal~g~~vhvvTvNdyLA~RDa~~m~~~y~~lg 154 (890)
T Consensus 9 L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--~G--~T-LVVSPLiSLM~DQ-V~~-l~~~G 81 (590)
T COG0514 9 LKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--EG--LT-LVVSPLISLMKDQ-VDQ-LEAAG 81 (590)
T ss_pred HHHHHCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHC--CC--CE-EEECCHHHHHHHH-HHH-HHHCC
T ss_conf 999709130388889999999658867998538987106743678865--99--78-9978568889999-999-99759
Q ss_pred CCEEEECCCCCHHHHHHHCC------CCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHCCCEEE
Q ss_conf 43676359879889974025------635334434321112214320000221026674388612035456430242152
Q gi|254780327|r 155 LSTGVVFHDLSDDKRRAAYA------CDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLII 228 (890)
Q Consensus 155 lsvg~~~~~~~~~~r~~~Y~------~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLiDeartPLiI 228 (890)
T Consensus 82 i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L---------------------------------- 127 (590)
T COG0514 82 IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELL---------------------------------- 127 (590)
T ss_pred CEEEHHHCCCCHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHH----------------------------------
T ss_conf 6520442436787799999998649645999881363176899999----------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 38876524787874345443013551441444432201467999986310168845247576001338999999999999
Q gi|254780327|r 229 SGPVEDHSDLYRTIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHT 308 (890)
Q Consensus 229 sg~~~~~~~~~~~~~~~~~~l~~~dy~id~~~~~v~lt~~G~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~A~~ 308 (890)
T Consensus 128 ------------------~~~~i~l~vIDEA------------HCiSqW--------GhdFRP~Y~~------------- 156 (590)
T COG0514 128 ------------------KRLPISLVAIDEA------------HCISQW--------GHDFRPDYRR------------- 156 (590)
T ss_pred ------------------HHCCCCEEEECHH------------HHHHHC--------CCCCCHHHHH-------------
T ss_conf ------------------7088756996217------------777641--------7743776899-------------
Q ss_pred HHHCCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCHH-H
Q ss_conf 852697316108937897554585156862112348999999730248431256643488998303200001343054-8
Q gi|254780327|r 309 LFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTAST-E 387 (890)
Q Consensus 309 ~~~~d~~Yiv~~~~v~ivDe~TGr~~~gr~~~~GlhQaieaKe~v~i~~e~~t~a~it~qn~Fr~y~kl~GmTGTa~t-e 387 (890)
T Consensus 157 -------------------------------------lg~l~~~~~-------------------~~p~~AlTATA~~~v 180 (590)
T COG0514 157 -------------------------------------LGRLRAGLP-------------------NPPVLALTATATPRV 180 (590)
T ss_pred -------------------------------------HHHHHHHCC-------------------CCCEEEEECCCCHHH
T ss_conf -------------------------------------999985179-------------------997799737898678
Q ss_pred HHHHHHHHCC---CEEEECCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCC
Q ss_conf 9999987199---6798078996224302034223778899999999999974099079861116789999999986077
Q gi|254780327|r 388 AEELANIYNL---DVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKF 464 (890)
Q Consensus 388 ~~Ef~~iY~l---~v~~iPtnkp~~r~d~~d~v~~t~~~k~~ai~~~i~~~~~~grpvLvgt~sve~Se~ls~~L~~~~~ 464 (890)
T Consensus 181 ~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~--~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~ 255 (590)
T COG0514 181 RDDIREQLGLQDANIFRGSFDRPNLALKVVEKG--EPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGI 255 (590)
T ss_pred HHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCC--CHHHHHHHHHH---HCCCCCCCEEEEEEEHHHHHHHHHHHHHCCC
T ss_conf 999999846788664871589852345564256--47888999874---1324689728999337759999999997797
Q ss_pred CHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 1022310224778888875305--58704887502446655402767557888651135755300899999999877643
Q gi|254780327|r 465 TKFQILNALYHEKEAYIISQAG--IPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLK 542 (890)
Q Consensus 465 ~~h~vLNAk~~~~Ea~Iia~AG--~~g~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (890)
T Consensus 256 -~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKp------------------------------------- 297 (590)
T COG0514 256 -SAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKP------------------------------------- 297 (590)
T ss_pred -CEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC-------------------------------------
T ss_conf -257751898899999999997169986899964624776788-------------------------------------
Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHH
Q ss_conf 33454076279982677532335542054345668672389984230145420
Q gi|254780327|r 543 EKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIF 595 (890)
Q Consensus 543 ~~v~~~GGL~VigterhesrRid~QlrGRagRQGdpG~s~f~~SleD~l~r~F 595 (890)
T Consensus 298 ------dVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~ 344 (590)
T COG0514 298 ------DVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRY 344 (590)
T ss_pred ------CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHH
T ss_conf ------84079980699898999999713567877021788606300799999