HHsearch alignment for GI: 254780327 and conserved domain: COG1199
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].
Probab=94.26 E-value=0.29 Score=29.67 Aligned_cols=228 Identities=18% Similarity=0.103 Sum_probs=107.6
Q ss_pred CCCCCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCC--HHHHHHHHHHHCCCEEEECCCCCEEEE
Q ss_conf 6862112348999999-7302484312566434889983032000013430--548999998719967980789962243
Q gi|254780327|r 335 PGRRYSDGQHQALEAK-ERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTA--STEAEELANIYNLDVIEVPTNVPVIRI 411 (890)
Q Consensus 335 ~gr~~~~GlhQaieaK-e~v~i~~e~~t~a~it~qn~Fr~y~kl~GmTGTa--~te~~Ef~~iY~l~v~~iPtnkp~~r~ 411 (890)
T Consensus 387 ~~~~~~~~l~~~~~~~~~~~vl~-----SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf-~~~~~~~~~v~~~~~~~~~ 460 (654)
T COG1199 387 LPLLVPSKLLEELFSKVASVVLT-----SATLSPLDSFSSLLGLLGLEEKLRFLSLPSPF-NYEEQGQLYVPTDLPEPRE 460 (654)
T ss_pred EECCCHHHHHHHHHHHCCEEEEE-----CCCCCCHHHHHHHHHHCCCCCCCEEECCCCCC-CHHHCCEEECCCCCCCCCC
T ss_conf 63375698988998655759998-----27768435599986025653123021479986-7655311413444578887
Q ss_pred ECHHHHCCCHHHHHHHHHHHHHHHHH-CCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC-
Q ss_conf 02034223778899999999999974-0990798611167899999999860771022310224778888875305587-
Q gi|254780327|r 412 DEHDEIYRTSEEKYAAIIAEIIDSHK-KGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKEAYIISQAGIPG- 489 (890)
Q Consensus 412 d~~d~v~~t~~~k~~ai~~~i~~~~~-~grpvLvgt~sve~Se~ls~~L~~~~~~~h~vLNAk~~~~Ea~Iia~AG~~g- 489 (890)
T Consensus 461 ----------~~~~~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~-~~~v~~q~~~~~~-~~l~~f~~~~~ 528 (654)
T COG1199 461 ----------PELLAKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERS-TLPVLTQGEDERE-ELLEKFKASGE 528 (654)
T ss_pred ----------HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCC-CCEEECCCCCCHH-HHHHHHHHCCC
T ss_conf ----------47999999999999974799889991789999999998651164-5334456878469-99999971478
Q ss_pred -CEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
Q ss_conf -0488750244665540276755788865113575530089999999987764333454076279982677532335542
Q gi|254780327|r 490 -AVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQL 568 (890)
Q Consensus 490 -~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL~VigterhesrRid~Ql 568 (890)
T Consensus 529 ~~~lv~~gsf~EGVD~~g~~l~~----vvI~~lPfp~p~dp~~~~r-------~~~~~~~g~~~f~~~~l~~A~~~l~Qa 597 (654)
T COG1199 529 GLILVGGGSFWEGVDFPGDALRL----VVIVGLPFPNPDDPLLKAR-------LEFLKRLGGDPFEEFYLPPAVIKLRQA 597 (654)
T ss_pred CEEEEEECCEECCEECCCCCEEE----EEEEECCCCCCCCHHHHHH-------HHHHHHHCCCCCCEEEHHHHHHHHHHH
T ss_conf 64999723310315168876579----9998268998998999999-------999987269971034589999999987
Q ss_pred CCCCCCC-CCCCCEEEEEECCCHHHHH
Q ss_conf 0543456-6867238998423014542
Q gi|254780327|r 569 RGRSGRQ-GDPGRSKFYLSLQDDLMRI 594 (890)
Q Consensus 569 rGRagRQ-GdpG~s~f~~SleD~l~r~ 594 (890)
T Consensus 598 vGRlIR~~~D~G~---ivllD~R~~~~ 621 (654)
T COG1199 598 VGRLIRSEDDRGV---IVLLDKRYATK 621 (654)
T ss_pred HCCCCCCCCCCEE---EEEECCCCCCH
T ss_conf 4301047887169---99971533206