HHsearch alignment for GI: 254780327 and conserved domain: COG1204
>COG1204 Superfamily II helicase [General function prediction only].
Probab=97.51 E-value=0.00034 Score=53.58 Aligned_cols=83 Identities=30% Similarity=0.404 Sum_probs=64.5
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHC---CCCCEEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHCCC
Q ss_conf 794506733680689999999998607---99956974692773875999999998829436763598798899740256
Q gi|254780327|r 99 KGCVAEMKTGEGKTLAAVLPVYLNALS---GKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYAC 175 (890)
Q Consensus 99 ~g~iaem~TGEGKTL~a~l~~~lnal~---g~~vhvvTvNdyLA~RDa~~m~~~y~~lglsvg~~~~~~~~~~r~~~Y~~ 175 (890)
T Consensus 48 ~N~li~aPTgsGKTlIA~lai-~~~l~~~~~k~vYivPlkA-La~Ek~~~~~-~~~~~GirV~~~TgD~~~~~-~~l~~~ 123 (766)
T COG1204 48 ENVLISAPTGSGKTLIALLAI-LSTLLEGGGKVVYIVPLKA-LAEEKYEEFS-RLEELGIRVGISTGDYDLDD-ERLARY 123 (766)
T ss_pred CCEEEECCCCCCHHHHHHHHH-HHHHHHCCCCEEEEECHHH-HHHHHHHHHH-HHHHCCCEEEEECCCCCCCH-HHHCCC
T ss_conf 867997678886699999999-9999855983899907599-9999999866-68865977999648865553-341458
Q ss_pred CCCCCCCCCC
Q ss_conf 3533443432
Q gi|254780327|r 176 DITYITNNEL 185 (890)
Q Consensus 176 di~Y~t~~e~ 185 (890)
T Consensus 124 ~ViVtT~EK~ 133 (766)
T COG1204 124 DVIVTTPEKL 133 (766)
T ss_pred CEEEECHHHH
T ss_conf 8799746786