HHsearch alignment for GI: 254780327 and conserved domain: COG4581

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair].
Probab=96.38  E-value=0.035  Score=37.21  Aligned_cols=123  Identities=24%  Similarity=0.274  Sum_probs=79.2

Q ss_pred             HHHCCCCCCHHHHHHHHHHCCC--CEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             7660876844799999997079--45067336806899999999986079995697469277387599999999882943
Q gi|254780327|r   79 RRTLGMRPFDVQLLGGMILHKG--CVAEMKTGEGKTLAAVLPVYLNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLS  156 (890)
Q Consensus        79 ~R~lg~~~~dvQl~g~~~l~~g--~iaem~TGEGKTL~a~l~~~lnal~g~~vhvvTvNdyLA~RDa~~m~~~y~~lgls  156 (890)
T Consensus       113 ~~~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALs---NQKyrdl~~~fgdv  189 (1041)
T COG4581         113 AREYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALS---NQKYRDLLAKFGDV  189 (1041)
T ss_pred             HHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHH---HHHHHHHHHHHHHH
T ss_conf             874898967899999999847995799733789855599999999987189448616306642---06799999986005


Q ss_pred             ---EEEECCCCCHHHHHHHCCCC-CCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHH
Q ss_conf             ---67635987988997402563-53344343211122143200002210266743886120354
Q gi|254780327|r  157 ---TGVVFHDLSDDKRRAAYACD-ITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSI  217 (890)
Q Consensus       157 ---vg~~~~~~~~~~r~~~Y~~d-i~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSi  217 (890)
T Consensus       190 ~~~vGL~TGDv~IN-----~~A~clvMTT------EILR-nMlyrg-~~~~~~i~~ViFDEvHyi  241 (1041)
T COG4581         190 ADMVGLMTGDVSIN-----PDAPCLVMTT------EILR-NMLYRG-SESLRDIEWVVFDEVHYI  241 (1041)
T ss_pred             HHHCCCEECCEEEC-----CCCCEEEEEH------HHHH-HHHCCC-CCCCCCCCEEEEEEEEEC
T ss_conf             65404010543427-----9996688609------9999-986258-610135306888766650