HHsearch alignment for GI: 254780327 and conserved domain: COG4581
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair].
Probab=96.38 E-value=0.035 Score=37.21 Aligned_cols=123 Identities=24% Similarity=0.274 Sum_probs=79.2
Q ss_pred HHHCCCCCCHHHHHHHHHHCCC--CEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7660876844799999997079--45067336806899999999986079995697469277387599999999882943
Q gi|254780327|r 79 RRTLGMRPFDVQLLGGMILHKG--CVAEMKTGEGKTLAAVLPVYLNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLS 156 (890)
Q Consensus 79 ~R~lg~~~~dvQl~g~~~l~~g--~iaem~TGEGKTL~a~l~~~lnal~g~~vhvvTvNdyLA~RDa~~m~~~y~~lgls 156 (890)
T Consensus 113 ~~~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALs---NQKyrdl~~~fgdv 189 (1041)
T COG4581 113 AREYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALS---NQKYRDLLAKFGDV 189 (1041)
T ss_pred HHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHH---HHHHHHHHHHHHHH
T ss_conf 874898967899999999847995799733789855599999999987189448616306642---06799999986005
Q ss_pred ---EEEECCCCCHHHHHHHCCCC-CCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHH
Q ss_conf ---67635987988997402563-53344343211122143200002210266743886120354
Q gi|254780327|r 157 ---TGVVFHDLSDDKRRAAYACD-ITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSI 217 (890)
Q Consensus 157 ---vg~~~~~~~~~~r~~~Y~~d-i~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSi 217 (890)
T Consensus 190 ~~~vGL~TGDv~IN-----~~A~clvMTT------EILR-nMlyrg-~~~~~~i~~ViFDEvHyi 241 (1041)
T COG4581 190 ADMVGLMTGDVSIN-----PDAPCLVMTT------EILR-NMLYRG-SESLRDIEWVVFDEVHYI 241 (1041)
T ss_pred HHHCCCEECCEEEC-----CCCCEEEEEH------HHHH-HHHCCC-CCCCCCCCEEEEEEEEEC
T ss_conf 65404010543427-----9996688609------9999-986258-610135306888766650