HHsearch alignment for GI: 254780327 and conserved domain: PRK02362
>PRK02362 ski2-like helicase; Provisional.
Probab=97.58 E-value=0.0013 Score=48.78 Aligned_cols=133 Identities=23% Similarity=0.186 Sum_probs=82.9
Q ss_pred CCC-CCCHHHHHHHH-HHCCCC--EEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 087-68447999999-970794--50673368068999999999860799956974692773875999999998829436
Q gi|254780327|r 82 LGM-RPFDVQLLGGM-ILHKGC--VAEMKTGEGKTLAAVLPVYLNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLST 157 (890)
Q Consensus 82 lg~-~~~dvQl~g~~-~l~~g~--iaem~TGEGKTL~a~l~~~lnal~g~~vhvvTvNdyLA~RDa~~m~~~y~~lglsv 157 (890)
T Consensus 19 ~gI~~Lyp~Q~eal~~gl~~g~NlvvsaPTgsGKTlvAElail~~l~~g~k~vYi~P~kALa~EK~~~~~~-~~~~gi~V 97 (736)
T PRK02362 19 SGIEELYPPQAEAVEAGLLEGKNLLAAIPTASGKTLLAELAMLKAIAEGGKALYIVPLRALASEKFEEFSE-FSELGLRV 97 (736)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHH-HHCCCCEE
T ss_conf 69975789999999864356981899799998589999999999998399799985879999999999998-74579989
Q ss_pred EEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHCC
Q ss_conf 7635987988997402563533443432111221432000022102667438861203545643024
Q gi|254780327|r 158 GVVFHDLSDDKRRAAYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEART 224 (890)
Q Consensus 158 g~~~~~~~~~~r~~~Y~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLiDeart 224 (890)
T Consensus 98 ~~~tGd~~~~~~~-l~~~dIiV~T~EK~------dsl~r~-~~~~l~~v~lVViDEiHli-~d~~RG 155 (736)
T PRK02362 98 GISTGDYDRRDEY-LGRNDIIVATSEKT------DSLLRN-GAPWIDDISCVVADEVHLI-DSPNRG 155 (736)
T ss_pred EEEECCCCCCHHH-CCCCCEEEECHHHH------HHHHHC-CCHHHHCCCEEEEECCEEE-CCCCCH
T ss_conf 9980898878314-36899999997999------999844-8167650898998176786-688724