HHsearch alignment for GI: 254780327 and conserved domain: PRK04837
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.56 E-value=1.4e-11 Score=113.89 Aligned_cols=331 Identities=21% Similarity=0.277 Sum_probs=200.6
Q ss_pred CCCCHHHHHHHHHHCCCC--EEEECCCCCHHHHHHHHHHHHHHC-----CC-----CCEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 768447999999970794--506733680689999999998607-----99-----956974692773875999999998
Q gi|254780327|r 84 MRPFDVQLLGGMILHKGC--VAEMKTGEGKTLAAVLPVYLNALS-----GK-----GVHVVTVNDYLARRDSNTMSAIYK 151 (890)
Q Consensus 84 ~~~~dvQl~g~~~l~~g~--iaem~TGEGKTL~a~l~~~lnal~-----g~-----~vhvvTvNdyLA~RDa~~m~~~y~ 151 (890)
T Consensus 30 ~~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~Qi~~~~~~l~~ 109 (423)
T PRK04837 30 EYCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHHLLSHPAPEGRKVNQPRALIMAPTRELAVQIHADAEPLAQ 109 (423)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 99999999999999679988998999874999999999999983745334556786189993889999999999999743
Q ss_pred HHCCCEEEECCCCCHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHCCCEEEC
Q ss_conf 829436763598798899740--256353344343211122143200002210266743886120354564302421523
Q gi|254780327|r 152 FLGLSTGVVFHDLSDDKRRAA--YACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIIS 229 (890)
Q Consensus 152 ~lglsvg~~~~~~~~~~r~~~--Y~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLiDeartPLiIs 229 (890)
T Consensus 110 ~~~l~~~~~~GG~~~~~q~~~l~~~~dIlV~TPgRL-~d~~~~~------~~~l~~i~~lVlDEAD~ll-d~-------- 173 (423)
T PRK04837 110 ATGLKLGLAYGGEGYDKQLKVLESGVDILIGTTGRL-IDYAKQN------HINLGAIQVVVLDEADRMF-DL-------- 173 (423)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHH-HHHHHHC------CCCCCCCEEEEEECHHHHH-HC--------
T ss_conf 258459999899887999998717999899891899-9998642------2123664289963446543-02--------
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 88765247878743454430135514414444322014679999863101688452475760013389999999999998
Q gi|254780327|r 230 GPVEDHSDLYRTIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHTL 309 (890)
Q Consensus 230 g~~~~~~~~~~~~~~~~~~l~~~dy~id~~~~~v~lt~~G~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~A~~~ 309 (890)
T Consensus 174 gF-------~~~i~~i~~~~p~~------~~r~~~-----------------------lfSATl---~~~v~~-l-a~~- 211 (423)
T PRK04837 174 GF-------IKDIRWLFRRMPPA------NQRLNM-----------------------LFSATL---SYRVRE-L-AFE- 211 (423)
T ss_pred CC-------HHHHHHHHHHCCCC------HHEEEE-----------------------EEECCC---CHHHHH-H-HHH-
T ss_conf 63-------99999999968962------210899-----------------------970368---889999-9-999-
Q ss_pred HHCCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCHHHHH
Q ss_conf 52697316108937897554585156862112348999999730248431256643488998303200001343054899
Q gi|254780327|r 310 FLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAE 389 (890)
Q Consensus 310 ~~~d~~Yiv~~~~v~ivDe~TGr~~~gr~~~~GlhQaieaKe~v~i~~e~~t~a~it~qn~Fr~y~kl~GmTGTa~te~~ 389 (890)
T Consensus 212 ~l~~p~~i~-------v~-----------------------------~~~~~~~~i~----------------------- 232 (423)
T PRK04837 212 HMNNPEYVE-------VE-----------------------------PEQKTGHRIK----------------------- 232 (423)
T ss_pred HCCCCEEEE-------EC-----------------------------CCCCCCCCEE-----------------------
T ss_conf 778987999-------65-----------------------------7765665426-----------------------
Q ss_pred HHHHHHCCCEEEECCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99987199679807899622430203422377889999999999997409907986111678999999998607710223
Q gi|254780327|r 390 ELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQI 469 (890)
Q Consensus 390 Ef~~iY~l~v~~iPtnkp~~r~d~~d~v~~t~~~k~~ai~~~i~~~~~~grpvLvgt~sve~Se~ls~~L~~~~~~~h~v 469 (890)
T Consensus 233 ------------------------~~~~~~~~~~K~~~L~~ll~~~~--~~k~iIF~nt~~~~~~l~~~L~~~g~-~~~~ 285 (423)
T PRK04837 233 ------------------------EELFYPSNEEKMRLLQTLIEEEW--PDRAIIFANTKHRCEEIWGHLAADGH-RVGL 285 (423)
T ss_pred ------------------------EEEEEECHHHHHHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHHCCC-CEEE
T ss_conf ------------------------99999172779999999998408--87468861628889999999976598-1787
Q ss_pred HHHH--HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1022--47788888753055870488750244665540276755788865113575530089999999987764333454
Q gi|254780327|r 470 LNAL--YHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIV 547 (890)
Q Consensus 470 LNAk--~~~~Ea~Iia~AG~~g~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 547 (890)
T Consensus 286 lhg~~~q~~R~~~l~~F~~g~~~vLVaTDvaaRGLDi~------------------------------------------ 323 (423)
T PRK04837 286 LTGDVPQKKRLRILEQFTRGDLDILVATDVAARGLHIP------------------------------------------ 323 (423)
T ss_pred ECCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCC------------------------------------------
T ss_conf 22545799999999999769998998700432777726------------------------------------------
Q ss_pred CCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHCCHHHHHHHH
Q ss_conf 0762799826775323355420543456686723899842301454202101344542
Q gi|254780327|r 548 AGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRMESFLR 605 (890)
Q Consensus 548 ~GGL~VigterhesrRid~QlrGRagRQGdpG~s~f~~SleD~l~r~Fgsdri~~lm~ 605 (890)
T Consensus 324 -~V~~VInyD~P~~~~~YiHRiGRTgRaG~~G~aitf~~~~~-~~~l~---~ie~~~~ 376 (423)
T PRK04837 324 -DVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEY-ALNLP---AIETYIG 376 (423)
T ss_pred -CCCEEEEECCCCCHHHEECCCCHHHCCCCCEEEEEEECHHH-HHHHH---HHHHHHC
T ss_conf -79889996998974551004654127899468999873999-99999---9999968