HHsearch alignment for GI: 254780327 and conserved domain: PRK05580
>PRK05580 primosome assembly protein PriA; Validated.
Probab=94.99 E-value=0.31 Score=29.45 Aligned_cols=118 Identities=22% Similarity=0.262 Sum_probs=77.9
Q ss_pred CCCCCHHHHH--HHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHC------CCCC
Q ss_conf 3368068999--9999998607999569746927738759999999988294367635987988997402------5635
Q gi|254780327|r 106 KTGEGKTLAA--VLPVYLNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAY------ACDI 177 (890)
Q Consensus 106 ~TGEGKTL~a--~l~~~lnal~g~~vhvvTvNdyLA~RDa~~m~~~y~~lglsvg~~~~~~~~~~r~~~Y------~~di 177 (890)
T Consensus 194 vTGSGKTevYl~li~~~l~--~GkqvLiLvPEI~lt---~q~~~rl~~~fg~~v~v~HS~ls~~eR~~~w~~i~~G~~~I 268 (699)
T PRK05580 194 VTGSGKTEVYLQAIAEALA--QGKQALVLVPEIALT---PQLLARFRARFGARVAVLHSGLSDGERYRAWLAALRGEARV 268 (699)
T ss_pred CCCCHHHHHHHHHHHHHHH--CCCCEEEEECCHHHH---HHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 8986079999999999997--399789991767878---99999999870995799648898579999999997699719
Q ss_pred CCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEE-CCHHHHHHH-----------------HCCCEEECCCCCCCHHHH
Q ss_conf 33443432111221432000022102667438861-203545643-----------------024215238876524787
Q gi|254780327|r 178 TYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVD-EVDSIFIDE-----------------ARTPLIISGPVEDHSDLY 239 (890)
Q Consensus 178 ~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivD-EvDSiLiDe-----------------artPLiIsg~~~~~~~~~ 239 (890)
T Consensus 269 VIGtRSAvFa-P-------------~~nLgLIIVDEEhd~SYKq~~~Pry~ARdvA~~Ra~~~~~~liLgSaTPSlEs~~ 334 (699)
T PRK05580 269 VIGTRSALFA-P-------------FKNLGLIIVDEEHDDSYKQQDGPRYHARDVAVLRAKQEGCPVVLGSATPSLESLA 334 (699)
T ss_pred EEECCCEEEC-C-------------CCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHH
T ss_conf 9973601106-5-------------7898489997365454446668761199999999998499889616899999999
Q ss_pred HHH
Q ss_conf 874
Q gi|254780327|r 240 RTI 242 (890)
Q Consensus 240 ~~~ 242 (890)
T Consensus 335 ~~~ 337 (699)
T PRK05580 335 NAE 337 (699)
T ss_pred HHH
T ss_conf 997