HHsearch alignment for GI: 254780327 and conserved domain: PRK09751
>PRK09751 putative ATP-dependent helicase Lhr; Provisional.
Probab=97.45 E-value=0.0013 Score=48.83 Aligned_cols=108 Identities=29% Similarity=0.331 Sum_probs=74.1
Q ss_pred CCCCCHHHHHHHHHHHHHH------------CCCCCEEECCCCHHHH-HHHH--HHHHH------HH-----HHCCCEEE
Q ss_conf 3368068999999999860------------7999569746927738-7599--99999------98-----82943676
Q gi|254780327|r 106 KTGEGKTLAAVLPVYLNAL------------SGKGVHVVTVNDYLAR-RDSN--TMSAI------YK-----FLGLSTGV 159 (890)
Q Consensus 106 ~TGEGKTL~a~l~~~lnal------------~g~~vhvvTvNdyLA~-RDa~--~m~~~------y~-----~lglsvg~ 159 (890)
T Consensus 4 PTGSGKTLAAFL~a-Ld~L~~~~~~~~~~~~~~~~~~VLYISPLKALa~Dv~rNL~~PL~gI~~~~~~~g~~~~~i~V~v 82 (1490)
T PRK09751 4 PTGSGKTLAAFLYA-LDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGI 82 (1490)
T ss_pred CCCCCHHHHHHHHH-HHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 88743989999999-99999614555555678897389995927888999999998799888999986256789975863
Q ss_pred ECCCCCHHHHHHHCC--CCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHHH
Q ss_conf 359879889974025--6353344343211122143200002210266743886120354564
Q gi|254780327|r 160 VFHDLSDDKRRAAYA--CDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFID 220 (890)
Q Consensus 160 ~~~~~~~~~r~~~Y~--~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLiD 220 (890)
T Consensus 83 RtGDT~~~eR~r~~r~PPdILITTPESL-~--L---lLtsk~r~~L~~v~~VIVDEiHalags 139 (1490)
T PRK09751 83 RTGDTPAQERSKLTRNPPDILITTPESL-Y--L---MLTSRARETLRGVETVIIDEVHAVAGS 139 (1490)
T ss_pred ECCCCCHHHHHHHHHCCCCEEEECHHHH-H--H---HHHHHHHHHHCCCCEEEECCCHHHHCC
T ss_conf 7999999999998508998398488999-9--9---873569999779989996286442058