HHsearch alignment for GI: 254780327 and conserved domain: PRK11131
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=97.12 E-value=0.024 Score=38.47 Aligned_cols=117 Identities=21% Similarity=0.160 Sum_probs=76.8
Q ss_pred CCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH--HCCCCCEEECC-----CCHHHHHHHHHHHHHHHHHC
Q ss_conf 087684479999999707945067336806899999999986--07999569746-----92773875999999998829
Q gi|254780327|r 82 LGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNA--LSGKGVHVVTV-----NDYLARRDSNTMSAIYKFLG 154 (890)
Q Consensus 82 lg~~~~dvQl~g~~~l~~g~iaem~TGEGKTL~a~l~~~lna--l~g~~vhvvTv-----NdyLA~RDa~~m~~~y~~lg 154 (890)
T Consensus 73 LPi~~~r~~i~~~i~~nqVvii~GeTGsGKTT--QiPq~~le~g~g~~~~I~~TQPRRiAA~svA~RVA~E~~~---~lG 147 (1295)
T PRK11131 73 LPVSQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGIKGLIGHTQPRRLAARTVANRIAEELET---ELG 147 (1295)
T ss_pred CCCHHHHHHHHHHHHHCCEEEEECCCCCCHHH--HHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCC---CCC
T ss_conf 99618999999999979969997689998788--9999999627999998997796599999999999998199---989
Q ss_pred CCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCH
Q ss_conf 4367635987988997402563533443432111221432000022102667438861203
Q gi|254780327|r 155 LSTGVVFHDLSDDKRRAAYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVD 215 (890)
Q Consensus 155 lsvg~~~~~~~~~~r~~~Y~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvD 215 (890)
T Consensus 148 ~~VGY~VRf~~----~~s~~t~i~~~TdGiLL~e~--------~~d~~L~~y~~iIiDEaH 196 (1295)
T PRK11131 148 GCVGYKVRFND----QVSDNTMVKLMTDGILLAEI--------QQDRLLMQYDTIIIDEAH 196 (1295)
T ss_pred CEEEEEECCCC----CCCCCCEEEEECCHHHHHHH--------HHCCCCCCCCEEEEECCC
T ss_conf 98888945698----87999779997656999986--------209987887779986855