HHsearch alignment for GI: 254780327 and conserved domain: PRK11131

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=97.12  E-value=0.024  Score=38.47  Aligned_cols=117  Identities=21%  Similarity=0.160  Sum_probs=76.8

Q ss_pred             CCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH--HCCCCCEEECC-----CCHHHHHHHHHHHHHHHHHC
Q ss_conf             087684479999999707945067336806899999999986--07999569746-----92773875999999998829
Q gi|254780327|r   82 LGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNA--LSGKGVHVVTV-----NDYLARRDSNTMSAIYKFLG  154 (890)
Q Consensus        82 lg~~~~dvQl~g~~~l~~g~iaem~TGEGKTL~a~l~~~lna--l~g~~vhvvTv-----NdyLA~RDa~~m~~~y~~lg  154 (890)
T Consensus        73 LPi~~~r~~i~~~i~~nqVvii~GeTGsGKTT--QiPq~~le~g~g~~~~I~~TQPRRiAA~svA~RVA~E~~~---~lG  147 (1295)
T PRK11131         73 LPVSQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGIKGLIGHTQPRRLAARTVANRIAEELET---ELG  147 (1295)
T ss_pred             CCCHHHHHHHHHHHHHCCEEEEECCCCCCHHH--HHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCC---CCC
T ss_conf             99618999999999979969997689998788--9999999627999998997796599999999999998199---989


Q ss_pred             CCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCH
Q ss_conf             4367635987988997402563533443432111221432000022102667438861203
Q gi|254780327|r  155 LSTGVVFHDLSDDKRRAAYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVD  215 (890)
Q Consensus       155 lsvg~~~~~~~~~~r~~~Y~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvD  215 (890)
T Consensus       148 ~~VGY~VRf~~----~~s~~t~i~~~TdGiLL~e~--------~~d~~L~~y~~iIiDEaH  196 (1295)
T PRK11131        148 GCVGYKVRFND----QVSDNTMVKLMTDGILLAEI--------QQDRLLMQYDTIIIDEAH  196 (1295)
T ss_pred             CEEEEEECCCC----CCCCCCEEEEECCHHHHHHH--------HHCCCCCCCCEEEEECCC
T ss_conf             98888945698----87999779997656999986--------209987887779986855