HHsearch alignment for GI: 254780327 and conserved domain: PRK11634
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional.
Probab=99.58 E-value=4.8e-11 Score=109.54 Aligned_cols=366 Identities=19% Similarity=0.204 Sum_probs=217.4
Q ss_pred CCCCHHHHHHHHHHCCCC--EEEECCCCCHHHHHHHHHHHHHH---CCCCCEEECCCCHHHHHHHHHHHHHHHHH-CCCE
Q ss_conf 768447999999970794--50673368068999999999860---79995697469277387599999999882-9436
Q gi|254780327|r 84 MRPFDVQLLGGMILHKGC--VAEMKTGEGKTLAAVLPVYLNAL---SGKGVHVVTVNDYLARRDSNTMSAIYKFL-GLST 157 (890)
Q Consensus 84 ~~~~dvQl~g~~~l~~g~--iaem~TGEGKTL~a~l~~~lnal---~g~~vhvvTvNdyLA~RDa~~m~~~y~~l-glsv 157 (890)
T Consensus 27 ~~PTpIQ~~aIP~iL~GkDvi~~AqTGSGKTlAFlLPiL~~l~~~~~~pqaLIL~PTRELA~QV~~~~~~l~~~~~~i~v 106 (629)
T PRK11634 27 EKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNV 106 (629)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99999999999999679988997888478999999999998662368986899789989999999999999721799779
Q ss_pred EEECCCCCHHH--HHHHCCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHCCCEEECCCCCCC
Q ss_conf 76359879889--9740256353344343211122143200002210266743886120354564302421523887652
Q gi|254780327|r 158 GVVFHDLSDDK--RRAAYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDH 235 (890)
Q Consensus 158 g~~~~~~~~~~--r~~~Y~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLiDeartPLiIsg~~~~~ 235 (890)
T Consensus 107 ~~l~GG~~~~~q~~~L~~g~~IVVgTPGRL~-----d~l~~--~~l~L~~l~~lVLDEAD~mL~~---------g----- 165 (629)
T PRK11634 107 VALYGGQRYDVQLRALRQGPQIVVGTPGRLL-----DHLKR--GTLDLSKLSGLVLDEADEMLRM---------G----- 165 (629)
T ss_pred EEEECCCCHHHHHHHHCCCCCEEEECHHHHH-----HHHHC--CCCCHHHCCEEEEECHHHHCCC---------C-----
T ss_conf 9998997789999986279999996989999-----99972--9641200767898671553363---------6-----
Q ss_pred HHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 47878743454430135514414444322014679999863101688452475760013389999999999998526973
Q gi|254780327|r 236 SDLYRTIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHTLFLRNRD 315 (890)
Q Consensus 236 ~~~~~~~~~~~~~l~~~dy~id~~~~~v~lt~~G~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~~ 315 (890)
T Consensus 166 --F~~di~~Il~~lp~~--------~Qt~-----------------------LfSATmp~---~i~-~l-a~~-~l~~P~ 206 (629)
T PRK11634 166 --FIEDVETIMAQIPEG--------HQTA-----------------------LFSATMPE---AIR-RI-TRR-FMKEPQ 206 (629)
T ss_pred --CHHHHHHHHHHCCCC--------CEEE-----------------------EEECCCCH---HHH-HH-HHH-HCCCCE
T ss_conf --599999999867403--------1446-----------------------66314659---999-99-998-756987
Q ss_pred EEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHH
Q ss_conf 16108937897554585156862112348999999730248431256643488998303200001343054899999871
Q gi|254780327|r 316 YIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIY 395 (890)
Q Consensus 316 Yiv~~~~v~ivDe~TGr~~~gr~~~~GlhQaieaKe~v~i~~e~~t~a~it~qn~Fr~y~kl~GmTGTa~te~~Ef~~iY 395 (890)
T Consensus 207 ~------i~i------------------------------~~~~~t~--------------------------------- 217 (629)
T PRK11634 207 E------VRI------------------------------QSSVTTR--------------------------------- 217 (629)
T ss_pred E------EEE------------------------------CCCCCCC---------------------------------
T ss_conf 9------740------------------------------4555557---------------------------------
Q ss_pred CCCEEEECCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHH--
Q ss_conf 996798078996224302034223778899999999999974099079861116789999999986077102231022--
Q gi|254780327|r 396 NLDVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNAL-- 473 (890)
Q Consensus 396 ~l~v~~iPtnkp~~r~d~~d~v~~t~~~k~~ai~~~i~~~~~~grpvLvgt~sve~Se~ls~~L~~~~~~~h~vLNAk-- 473 (890)
T Consensus 218 -----------~~i~q~---~~~v~~~~K~~aL~~~L~~-~-~~~~~IIF~~Tk~~~~~l~~~L~~~g~-~~~~LHgdm~ 280 (629)
T PRK11634 218 -----------PDISQS---YWTVWGMRKNEALVRFLEA-E-DFDAAIIFVRTKNATLEVAEALERNGY-NSAALNGDMN 280 (629)
T ss_pred -----------CCCEEE---EEEECCHHHHHHHHHHHHH-C-CCCEEEEEEECHHHHHHHHHHHHHCCC-CEEEEECCCC
T ss_conf -----------763059---9996524579999999861-5-888489998227889999999997699-6576568999
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 47788888753055870488750244665540276755788865113575530089999999987764333454076279
Q gi|254780327|r 474 YHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAGGLYV 553 (890)
Q Consensus 474 ~~~~Ea~Iia~AG~~g~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL~V 553 (890)
T Consensus 281 q~~R~~~l~~Fr~g~~~ILVaTDvaARGLDi~-------------------------------------------~V~~V 317 (629)
T PRK11634 281 QALREQTLERLKDGRLDILIATDVAARGLDVE-------------------------------------------RISLV 317 (629)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC-------------------------------------------CCCEE
T ss_conf 99999999999759998898786210557725-------------------------------------------68889
Q ss_pred EEECCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98267753233554205434566867238998423014542021013445421002566621456799999999987333
Q gi|254780327|r 554 ISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRMESFLRKIGLKEGEAIIHPWINKAIERAQQKVEA 633 (890)
Q Consensus 554 igterhesrRid~QlrGRagRQGdpG~s~f~~SleD~l~r~Fgsdri~~lm~klg~~egepIes~~itksIE~AQKkVE~ 633 (890)
T Consensus 318 INyDlP~d~e~YVHRiGRTGRaGr~G~Aitfv~~~e~~~l~~ier~~~~~~~~~~~p~~~~i~~~r~~~~~~~~~~~~~~ 397 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLES 397 (629)
T ss_pred EEECCCCCHHHCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99689897434010258331689964699988889999999999997798601489699999999999999999887512
Q ss_pred HHHHH
Q ss_conf 46799
Q gi|254780327|r 634 RNFET 638 (890)
Q Consensus 634 ~NFdi 638 (890)
T Consensus 398 ~~~~~ 402 (629)
T PRK11634 398 SDLDQ 402 (629)
T ss_pred CCHHH
T ss_conf 54689