HHsearch alignment for GI: 254780327 and conserved domain: PRK11664

Probab=96.88  E-value=0.046  Score=36.25  Aligned_cols=113  Identities=19%  Similarity=0.219  Sum_probs=66.4

Q ss_pred             CCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCEEECCCCH-----HHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             8447999999970794506733680689999999998-607999569746927-----7387599999999882943676
Q gi|254780327|r   86 PFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLN-ALSGKGVHVVTVNDY-----LARRDSNTMSAIYKFLGLSTGV  159 (890)
Q Consensus        86 ~~dvQl~g~~~l~~g~iaem~TGEGKTL~a~l~~~ln-al~g~~vhvvTvNdy-----LA~RDa~~m~~~y~~lglsvg~  159 (890)
T Consensus         8 ~~~~~i~~~l~~~~~~vl~a~tGsGKtTqvP~~ll~~~~~~g--~I~~~qPRR~AA~s~A~RvA~e~~---e~~G~~VGY   82 (812)
T PRK11664          8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQQGGING--KIIMLEPRRLAARNVAQRLAEQLG---EKPGETVGY   82 (812)
T ss_pred             HHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCC--CEEEECCHHHHHHHHHHHHHHHHC---CCCCCEEEE
T ss_conf             899999999997997999908999989999999996468899--389938839999999999999729---999986757


Q ss_pred             ECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCH
Q ss_conf             35987988997402563533443432111221432000022102667438861203
Q gi|254780327|r  160 VFHDLSDDKRRAAYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVD  215 (890)
Q Consensus       160 ~~~~~~~~~r~~~Y~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvD  215 (890)
T Consensus        83 ~vR~e~----~~s~~Tri~~~T~GiLl----r-~l---~~dp~L~~~~~vI~DE~H  126 (812)
T PRK11664         83 RMRAES----KVGPNTRLEVVTEGILT----R-MI---QRDPELSGVGLVILDEFH  126 (812)
T ss_pred             EECCCC----CCCCCCEEEEECHHHHH----H-HH---HHCCCCCCCCEEEEECCC
T ss_conf             825677----88998579997558999----9-97---249776778889995754