HHsearch alignment for GI: 254780327 and conserved domain: PRK13766

>PRK13766 Hef nuclease; Provisional.
Probab=99.03  E-value=8.2e-07  Score=74.99  Aligned_cols=392  Identities=22%  Similarity=0.286  Sum_probs=194.8

Q ss_pred             HCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHC--CCCCEEECCCCHHHHHHHHHHHHHHHHHCC---
Q ss_conf             608768447999999970794506733680689999999998607--999569746927738759999999988294---
Q gi|254780327|r   81 TLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALS--GKGVHVVTVNDYLARRDSNTMSAIYKFLGL---  155 (890)
Q Consensus        81 ~lg~~~~dvQl~g~~~l~~g~iaem~TGEGKTL~a~l~~~lnal~--g~~vhvvTvNdyLA~RDa~~m~~~y~~lgl---  155 (890)
T Consensus        13 ~ie~R~YQ~el~~~-Al~~NtiVvLPTG~GKT~IA~lvi~-~~l~~~~gKilFLaPT~pLV~---Qq~~~~~~~l~i~~~   87 (764)
T PRK13766         13 TIEARLYQQLLAAK-ALKGNTLVVLPTGLGKTAIALLVIA-ERLQKYGGKVLILAPTKPLVE---QHAEFFRKFLNIDPE   87 (764)
T ss_pred             CCCCCHHHHHHHHH-HHHCCEEEEECCCCCHHHHHHHHHH-HHHHHCCCEEEEECCCHHHHH---HHHHHHHHHCCCCCC
T ss_conf             77653879999999-9858989995998668999999999-999748988999858888999---999999997099955


Q ss_pred             CEEEECCCCCHHHHHHHC-CCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHH------------HHHHH
Q ss_conf             367635987988997402-56353344343211122143200002210266743886120354------------56430
Q gi|254780327|r  156 STGVVFHDLSDDKRRAAY-ACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSI------------FIDEA  222 (890)
Q Consensus       156 svg~~~~~~~~~~r~~~Y-~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSi------------LiDea  222 (890)
T Consensus        88 ~i~~ltG~~~~~~r~~~w~~~~Viv~TPQvl~nd-L~~g------~i~l~dv~lLVfDEaHha~Gnh~Y~~I~~~y~~~~  160 (764)
T PRK13766         88 KIVVLTGEISPEKRAALWEKAKVIVATPQVIEND-LLAG------RISLEDVSLLIFDEAHRAVGNYAYVFIAERYHEDA  160 (764)
T ss_pred             EEEEEECCCCHHHHHHHHCCCCEEEECCHHHHHH-HHHC------CCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHCC
T ss_conf             2899988878276899860799999990899999-9829------86788822899974666667762899999998537


Q ss_pred             CCCEEEC---CCCCCCHHHHHHHHHHHHHHCCCC-------------EEE--CCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             2421523---887652478787434544301355-------------144--1444432201467999986310168845
Q gi|254780327|r  223 RTPLIIS---GPVEDHSDLYRTIDSIIIQLHPSD-------------YEI--DEKQRTVHFSEKGTERIEELLHGENLLK  284 (890)
Q Consensus       223 rtPLiIs---g~~~~~~~~~~~~~~~~~~l~~~d-------------y~i--d~~~~~v~lt~~G~~~~e~~~~~~~~~~  284 (890)
T Consensus       161 ~~PrILGLTASPGs~~e~I~----ev~~nL~i~~ie~rte~d~dv~~yv~~~~ie~i~V~l~~~~-~~i~----------  225 (764)
T PRK13766        161 KNPLVLGLTASPGSDEEKIK----EVCENLGIEHVEVKTEDDPDVRPYVHKVKVEWIRVELPEEL-KEIR----------  225 (764)
T ss_pred             CCCEEEEECCCCCCCHHHHH----HHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEECCCHHH-HHHH----------
T ss_conf             78558850368876448999----99986598728961444434454335673279980797899-9999----------


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECC-CEE-----EEE-CCCCCCCCC-CCCCHH---------HHHHH
Q ss_conf             2475760013389999999999998526973161089-378-----975-545851568-621123---------48999
Q gi|254780327|r  285 SGGLYSFENVAIVHLINNALKSHTLFLRNRDYIVNRD-EVV-----IID-EFTGRMMPG-RRYSDG---------QHQAL  347 (890)
Q Consensus       285 ~~~l~~~~~~~~~~~i~~al~A~~~~~~d~~Yiv~~~-~v~-----ivD-e~TGr~~~g-r~~~~G---------lhQai  347 (890)
T Consensus       226 -------------~~l~~~l~~~l~~L~~~~~~~~~~~~~sk~~l~~~~~~~~~~i~~~~~~~~~~~~~~a~~~kl~~a~  292 (764)
T PRK13766        226 -------------DLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKRIQQEIARGDPEGYEAISIHAEAMKLRHAV  292 (764)
T ss_pred             -------------HHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             -------------9999999999999996697004555468999999999999988646879999999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCHHH-----HHHHHHHHCCCEEEECCCCCEEEEECHHHHCCCHH
Q ss_conf             9997302484312566434889983032000013430548-----99999871996798078996224302034223778
Q gi|254780327|r  348 EAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTE-----AEELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSE  422 (890)
Q Consensus       348 eaKe~v~i~~e~~t~a~it~qn~Fr~y~kl~GmTGTa~te-----~~Ef~~iY~l~v~~iPtnkp~~r~d~~d~v~~t~~  422 (890)
T Consensus       293 ell~---------tqg~~~~~~yl~~l~~-~~~~~~~k~~k~l~~d~~~~~~~~~~~--------~~~~~---------h  345 (764)
T PRK13766        293 ELLE---------TQGVEALRRYLERLRE-EARSSGSKASKRLVEDPRFKKAVRLLK--------ELDIE---------H  345 (764)
T ss_pred             HHHH---------HHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHCHHHHHHHHHHH--------HCCCC---------C
T ss_conf             9999---------8518999999999997-301333267899875877899999876--------44678---------9


Q ss_pred             HHHHHHHHHHHHHHH--CCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHH---------HHHHHHHHHHH--HCCCCC
Q ss_conf             899999999999974--09907986111678999999998607710223102---------24778888875--305587
Q gi|254780327|r  423 EKYAAIIAEIIDSHK--KGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNA---------LYHEKEAYIIS--QAGIPG  489 (890)
Q Consensus       423 ~k~~ai~~~i~~~~~--~grpvLvgt~sve~Se~ls~~L~~~~~~~h~vLNA---------k~~~~Ea~Iia--~AG~~g  489 (890)
T Consensus       346 PKl~kL~eiL~~~~~~~~~sRvIIFv~~R~Ta~~L~~~L~~~~i-k~~~fVGq~s~~~~kGmsqkeQ~evL~~FR~G-e~  423 (764)
T PRK13766        346 PKLEKLLEIVKEQLGKKPDSRIIVFTQYRDTAEKIVDLLNKNGI-KAIRFVGQASRDGDKGMSQKEQIETLDRFRAG-EY  423 (764)
T ss_pred             CHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHHCC-CC
T ss_conf             37999999999997269998089992767999999999865899-72289836898788898989999999998579-98


Q ss_pred             CEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCH-HHHHHH
Q ss_conf             0488750244665540276755788865113575530089999999987764333454076279982677532-335542
Q gi|254780327|r  490 AVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAGGLYVISTERHESR-RIDNQL  568 (890)
Q Consensus       490 ~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL~Vigterhesr-Rid~Ql  568 (890)
T Consensus       424 NvLVATSV~EEGLDIP---~----------------------------------------cdLVI~Yd~v~S~IR~-IQR  459 (764)
T PRK13766        424 NVLVATSVAEEGLDIP---S----------------------------------------VDLVIFYEPVPSEIRS-IQR  459 (764)
T ss_pred             CEEEECCHHHCCCCCC---C----------------------------------------CCEEEEECCCCCHHHH-HHH
T ss_conf             8898767664488887---7----------------------------------------8889993799619999-997


Q ss_pred             CCCCCCCCCCCCEEEEEE
Q ss_conf             054345668672389984
Q gi|254780327|r  569 RGRSGRQGDPGRSKFYLS  586 (890)
Q Consensus       569 rGRagRQGdpG~s~f~~S  586 (890)
T Consensus       460 ~GRTGR~r~-G~v~vLi~  476 (764)
T PRK13766        460 KGRTGRQRG-GRVVVLIA  476 (764)
T ss_pred             CCCCCCCCC-CEEEEEEE
T ss_conf             466567789-74999995