HHsearch alignment for GI: 254780327 and conserved domain: PRK13766
>PRK13766 Hef nuclease; Provisional.
Probab=99.03 E-value=8.2e-07 Score=74.99 Aligned_cols=392 Identities=22% Similarity=0.286 Sum_probs=194.8
Q ss_pred HCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHC--CCCCEEECCCCHHHHHHHHHHHHHHHHHCC---
Q ss_conf 608768447999999970794506733680689999999998607--999569746927738759999999988294---
Q gi|254780327|r 81 TLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALS--GKGVHVVTVNDYLARRDSNTMSAIYKFLGL--- 155 (890)
Q Consensus 81 ~lg~~~~dvQl~g~~~l~~g~iaem~TGEGKTL~a~l~~~lnal~--g~~vhvvTvNdyLA~RDa~~m~~~y~~lgl--- 155 (890)
T Consensus 13 ~ie~R~YQ~el~~~-Al~~NtiVvLPTG~GKT~IA~lvi~-~~l~~~~gKilFLaPT~pLV~---Qq~~~~~~~l~i~~~ 87 (764)
T PRK13766 13 TIEARLYQQLLAAK-ALKGNTLVVLPTGLGKTAIALLVIA-ERLQKYGGKVLILAPTKPLVE---QHAEFFRKFLNIDPE 87 (764)
T ss_pred CCCCCHHHHHHHHH-HHHCCEEEEECCCCCHHHHHHHHHH-HHHHHCCCEEEEECCCHHHHH---HHHHHHHHHCCCCCC
T ss_conf 77653879999999-9858989995998668999999999-999748988999858888999---999999997099955
Q ss_pred CEEEECCCCCHHHHHHHC-CCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHH------------HHHHH
Q ss_conf 367635987988997402-56353344343211122143200002210266743886120354------------56430
Q gi|254780327|r 156 STGVVFHDLSDDKRRAAY-ACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSI------------FIDEA 222 (890)
Q Consensus 156 svg~~~~~~~~~~r~~~Y-~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSi------------LiDea 222 (890)
T Consensus 88 ~i~~ltG~~~~~~r~~~w~~~~Viv~TPQvl~nd-L~~g------~i~l~dv~lLVfDEaHha~Gnh~Y~~I~~~y~~~~ 160 (764)
T PRK13766 88 KIVVLTGEISPEKRAALWEKAKVIVATPQVIEND-LLAG------RISLEDVSLLIFDEAHRAVGNYAYVFIAERYHEDA 160 (764)
T ss_pred EEEEEECCCCHHHHHHHHCCCCEEEECCHHHHHH-HHHC------CCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHCC
T ss_conf 2899988878276899860799999990899999-9829------86788822899974666667762899999998537
Q ss_pred CCCEEEC---CCCCCCHHHHHHHHHHHHHHCCCC-------------EEE--CCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 2421523---887652478787434544301355-------------144--1444432201467999986310168845
Q gi|254780327|r 223 RTPLIIS---GPVEDHSDLYRTIDSIIIQLHPSD-------------YEI--DEKQRTVHFSEKGTERIEELLHGENLLK 284 (890)
Q Consensus 223 rtPLiIs---g~~~~~~~~~~~~~~~~~~l~~~d-------------y~i--d~~~~~v~lt~~G~~~~e~~~~~~~~~~ 284 (890)
T Consensus 161 ~~PrILGLTASPGs~~e~I~----ev~~nL~i~~ie~rte~d~dv~~yv~~~~ie~i~V~l~~~~-~~i~---------- 225 (764)
T PRK13766 161 KNPLVLGLTASPGSDEEKIK----EVCENLGIEHVEVKTEDDPDVRPYVHKVKVEWIRVELPEEL-KEIR---------- 225 (764)
T ss_pred CCCEEEEECCCCCCCHHHHH----HHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEECCCHHH-HHHH----------
T ss_conf 78558850368876448999----99986598728961444434454335673279980797899-9999----------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECC-CEE-----EEE-CCCCCCCCC-CCCCHH---------HHHHH
Q ss_conf 2475760013389999999999998526973161089-378-----975-545851568-621123---------48999
Q gi|254780327|r 285 SGGLYSFENVAIVHLINNALKSHTLFLRNRDYIVNRD-EVV-----IID-EFTGRMMPG-RRYSDG---------QHQAL 347 (890)
Q Consensus 285 ~~~l~~~~~~~~~~~i~~al~A~~~~~~d~~Yiv~~~-~v~-----ivD-e~TGr~~~g-r~~~~G---------lhQai 347 (890)
T Consensus 226 -------------~~l~~~l~~~l~~L~~~~~~~~~~~~~sk~~l~~~~~~~~~~i~~~~~~~~~~~~~~a~~~kl~~a~ 292 (764)
T PRK13766 226 -------------DLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKRIQQEIARGDPEGYEAISIHAEAMKLRHAV 292 (764)
T ss_pred -------------HHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf -------------9999999999999996697004555468999999999999988646879999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCHHH-----HHHHHHHHCCCEEEECCCCCEEEEECHHHHCCCHH
Q ss_conf 9997302484312566434889983032000013430548-----99999871996798078996224302034223778
Q gi|254780327|r 348 EAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTE-----AEELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSE 422 (890)
Q Consensus 348 eaKe~v~i~~e~~t~a~it~qn~Fr~y~kl~GmTGTa~te-----~~Ef~~iY~l~v~~iPtnkp~~r~d~~d~v~~t~~ 422 (890)
T Consensus 293 ell~---------tqg~~~~~~yl~~l~~-~~~~~~~k~~k~l~~d~~~~~~~~~~~--------~~~~~---------h 345 (764)
T PRK13766 293 ELLE---------TQGVEALRRYLERLRE-EARSSGSKASKRLVEDPRFKKAVRLLK--------ELDIE---------H 345 (764)
T ss_pred HHHH---------HHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHCHHHHHHHHHHH--------HCCCC---------C
T ss_conf 9999---------8518999999999997-301333267899875877899999876--------44678---------9
Q ss_pred HHHHHHHHHHHHHHH--CCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHH---------HHHHHHHHHHH--HCCCCC
Q ss_conf 899999999999974--09907986111678999999998607710223102---------24778888875--305587
Q gi|254780327|r 423 EKYAAIIAEIIDSHK--KGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNA---------LYHEKEAYIIS--QAGIPG 489 (890)
Q Consensus 423 ~k~~ai~~~i~~~~~--~grpvLvgt~sve~Se~ls~~L~~~~~~~h~vLNA---------k~~~~Ea~Iia--~AG~~g 489 (890)
T Consensus 346 PKl~kL~eiL~~~~~~~~~sRvIIFv~~R~Ta~~L~~~L~~~~i-k~~~fVGq~s~~~~kGmsqkeQ~evL~~FR~G-e~ 423 (764)
T PRK13766 346 PKLEKLLEIVKEQLGKKPDSRIIVFTQYRDTAEKIVDLLNKNGI-KAIRFVGQASRDGDKGMSQKEQIETLDRFRAG-EY 423 (764)
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHHCC-CC
T ss_conf 37999999999997269998089992767999999999865899-72289836898788898989999999998579-98
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCH-HHHHHH
Q ss_conf 0488750244665540276755788865113575530089999999987764333454076279982677532-335542
Q gi|254780327|r 490 AVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAGGLYVISTERHESR-RIDNQL 568 (890)
Q Consensus 490 ~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL~Vigterhesr-Rid~Ql 568 (890)
T Consensus 424 NvLVATSV~EEGLDIP---~----------------------------------------cdLVI~Yd~v~S~IR~-IQR 459 (764)
T PRK13766 424 NVLVATSVAEEGLDIP---S----------------------------------------VDLVIFYEPVPSEIRS-IQR 459 (764)
T ss_pred CEEEECCHHHCCCCCC---C----------------------------------------CCEEEEECCCCCHHHH-HHH
T ss_conf 8898767664488887---7----------------------------------------8889993799619999-997
Q ss_pred CCCCCCCCCCCCEEEEEE
Q ss_conf 054345668672389984
Q gi|254780327|r 569 RGRSGRQGDPGRSKFYLS 586 (890)
Q Consensus 569 rGRagRQGdpG~s~f~~S 586 (890)
T Consensus 460 ~GRTGR~r~-G~v~vLi~ 476 (764)
T PRK13766 460 KGRTGRQRG-GRVVVLIA 476 (764)
T ss_pred CCCCCCCCC-CEEEEEEE
T ss_conf 466567789-74999995