HHsearch alignment for GI: 254780327 and conserved domain: PTZ00110
>PTZ00110 helicase; Provisional.
Probab=99.44 E-value=5.1e-10 Score=101.12 Aligned_cols=372 Identities=20% Similarity=0.209 Sum_probs=226.9
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHH-------H-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC-
Q ss_conf 9842288883898999999999999997399888-------9-669999999999576608768447999999970794-
Q gi|254780327|r 31 INELEKEISHLSDDSLANKTSEFKERINNGETLD-------D-LLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGC- 101 (890)
Q Consensus 31 in~~e~~~~~lsd~~l~~~t~~~~~~~~~g~~l~-------~-~l~eafa~~rea~~R~lg~~~~dvQl~g~~~l~~g~- 101 (890)
T Consensus 145 fY~eh~~v~~~s~~ev~~~r~~~~i~v~~G~~vP~Pi~~F~~~~fp~---~il~~i~~~GF~~PTPIQ~qaIPiaLsGrD 221 (602)
T PTZ00110 145 FYKEHPEVSAMSTKEVDDIRKEREITIIAGRDVPKPVVSFEYTSFPD---YILKSIEAAGFTEPTPIQVQGWPIALSGRD 221 (602)
T ss_pred CCCCCHHHHHCCHHHHHHHHHHCCCEEECCCCCCCCCCCHHHCCCCH---HHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 77769767618999999999977988927898994726650159999---999999976999999899999879856986
Q ss_pred -EEEECCCCCHHHHHHHHHHHHHHC------CCC--CEEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHH--HH
Q ss_conf -506733680689999999998607------999--5697469277387599999999882943676359879889--97
Q gi|254780327|r 102 -VAEMKTGEGKTLAAVLPVYLNALS------GKG--VHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDK--RR 170 (890)
Q Consensus 102 -iaem~TGEGKTL~a~l~~~lnal~------g~~--vhvvTvNdyLA~RDa~~m~~~y~~lglsvg~~~~~~~~~~--r~ 170 (890)
T Consensus 222 vIgiAqTGSGKTLAFlLP~l~hi~~q~~~~~~~gP~aLILaPTRELA~QI~~e~~~~~~~~~ir~~~i~GG~~~~~Q~~~ 301 (602)
T PTZ00110 222 MIGIAETGSGKTLAFLLPAIVHINAQPLLRPGDGPIVLVLAPTRELAEQIREQALQFGRSSKLKNSVAYGGVPKRFQTYA 301 (602)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
T ss_conf 79987897889999999999998516343678997699973839999999999999715478549999799687999998
Q ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 40256353344343211122143200002210266743886120354564302421523887652478787434544301
Q gi|254780327|r 171 AAYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSIIIQLH 250 (890)
Q Consensus 171 ~~Y~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLiDeartPLiIsg~~~~~~~~~~~~~~~~~~l~ 250 (890)
T Consensus 302 L~~G~dIvVATPGRLi-----DlL~--~~~~~L~~v~yLVLDEADRML-DmGFe---------------~qI~~Il~~i~ 358 (602)
T PTZ00110 302 LRRGVEILIACPGRLI-----DFLE--SNVTNLRRVTYLVLDEADRML-DMGFE---------------PQIRKIVSQIR 358 (602)
T ss_pred HCCCCCEEEECCHHHH-----HHHH--CCCCCCCCEEEEEEECHHHHH-CCCCH---------------HHHHHHHHHCC
T ss_conf 7169999997923899-----9996--499874310289987577663-54629---------------99999998589
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCC
Q ss_conf 35514414444322014679999863101688452475760013389999999999998526973161089378975545
Q gi|254780327|r 251 PSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVIIDEFT 330 (890)
Q Consensus 251 ~~dy~id~~~~~v~lt~~G~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~~Yiv~~~~v~ivDe~T 330 (890)
T Consensus 359 pd--------RQTl-----------------------LFSAT---~p~~V~-~L-A~~~L~~~Pv~I-------~Vg~-- 393 (602)
T PTZ00110 359 PD--------RQTL-----------------------MWSAT---WPKEVQ-SL-ARDLCKEEPVHV-------NVGS-- 393 (602)
T ss_pred CC--------CEEE-----------------------EEECC---CCHHHH-HH-HHHHHCCCCEEE-------EECC--
T ss_conf 78--------7799-----------------------99558---998999-99-999820698899-------9368--
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHCCCEEEECCCCCEEE
Q ss_conf 85156862112348999999730248431256643488998303200001343054899999871996798078996224
Q gi|254780327|r 331 GRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIR 410 (890)
Q Consensus 331 Gr~~~gr~~~~GlhQaieaKe~v~i~~e~~t~a~it~qn~Fr~y~kl~GmTGTa~te~~Ef~~iY~l~v~~iPtnkp~~r 410 (890)
T Consensus 394 ---------------------------~~~----------------------~a--------------------~~~-I~ 403 (602)
T PTZ00110 394 ---------------------------LDL----------------------TT--------------------CHN-IK 403 (602)
T ss_pred ---------------------------CCC----------------------CC--------------------CCC-CE
T ss_conf ---------------------------887----------------------77--------------------787-05
Q ss_pred EECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHH--HHHHHHHHHHHCCCC
Q ss_conf 302034223778899999999999974099079861116789999999986077102231022--477888887530558
Q gi|254780327|r 411 IDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNAL--YHEKEAYIISQAGIP 488 (890)
Q Consensus 411 ~d~~d~v~~t~~~k~~ai~~~i~~~~~~grpvLvgt~sve~Se~ls~~L~~~~~~~h~vLNAk--~~~~Ea~Iia~AG~~ 488 (890)
T Consensus 404 ---Q~v~vv~~~eK~~~L~~lL~~~~~-~~kvIIFvnTK~~ad~L~~~L~~~G~-~a~~LHGd~~Q~eR~~~L~~Fr~G~ 478 (602)
T PTZ00110 404 ---QEVFVIEEHEKRAKLKELLGQIMD-GGKILIFSETKKGADTLTKELRLDGW-PALCIHGDKKQEERTWVLNEFKTGK 478 (602)
T ss_pred ---EEEEEECHHHHHHHHHHHHHHCCC-CCCEEEEECCHHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf ---899996518899999999985278-99689992973899999999986799-5798208899999999999997699
Q ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
Q ss_conf 70488750244665540276755788865113575530089999999987764333454076279982677532335542
Q gi|254780327|r 489 GAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQL 568 (890)
Q Consensus 489 g~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL~VigterhesrRid~Ql 568 (890)
T Consensus 479 ~~ILVATDVAARGLDI~-------------------------------------------dV~~VINYD~P~~~edYVHR 515 (602)
T PTZ00110 479 HPIMIATDVASRGLDVR-------------------------------------------DVKYVINFDFPNQIEDYVHR 515 (602)
T ss_pred CCEEEECCHHHCCCCCC-------------------------------------------CCCEEEEECCCCCCCCCCCC
T ss_conf 98898822233155515-------------------------------------------79879995897980221013
Q ss_pred CCCCCCCCCCCCEEEEEECCCHH
Q ss_conf 05434566867238998423014
Q gi|254780327|r 569 RGRSGRQGDPGRSKFYLSLQDDL 591 (890)
Q Consensus 569 rGRagRQGdpG~s~f~~SleD~l 591 (890)
T Consensus 516 IGRTGRAG~kG~A~TF~Tpd~~~ 538 (602)
T PTZ00110 516 IGRTGRAGAKGASYTFLTPDKYR 538 (602)
T ss_pred CCCCCCCCCCEEEEEEECCCCHH
T ss_conf 56150689931699997777077