HHsearch alignment for GI: 254780327 and conserved domain: cd00268
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.42 E-value=3.2e-06 Score=70.10 Aligned_cols=131 Identities=23% Similarity=0.285 Sum_probs=100.2
Q ss_pred CCC-CCCHHHHHHHHHHCCCC--EEEECCCCCHHHHHHHHHHHHHHC-----CCCCEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 087-68447999999970794--506733680689999999998607-----9995697469277387599999999882
Q gi|254780327|r 82 LGM-RPFDVQLLGGMILHKGC--VAEMKTGEGKTLAAVLPVYLNALS-----GKGVHVVTVNDYLARRDSNTMSAIYKFL 153 (890)
Q Consensus 82 lg~-~~~dvQl~g~~~l~~g~--iaem~TGEGKTL~a~l~~~lnal~-----g~~vhvvTvNdyLA~RDa~~m~~~y~~l 153 (890)
T Consensus 17 ~g~~~pt~IQ~~~ip~il~g~dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PTrELa~Qi~~~~~~l~~~~ 96 (203)
T cd00268 17 LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 79999999999999999779988997579972228888699999861667689669999687999999999999850579
Q ss_pred CCCEEEECCCCCHHHHHH--HCCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHH
Q ss_conf 943676359879889974--025635334434321112214320000221026674388612035456
Q gi|254780327|r 154 GLSTGVVFHDLSDDKRRA--AYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFI 219 (890)
Q Consensus 154 glsvg~~~~~~~~~~r~~--~Y~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLi 219 (890)
T Consensus 97 ~i~~~~~~gg~~~~~~~~~l~~~~~IlI~TPgrl-~~~l~~~------~~~l~~l~~lVlDEAD~ll~ 157 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRL-LDLLERG------KLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHH-HHHHHCC------CCCCCCCCEEEEECHHHHHH
T ss_conf 8389998389887999999853875999681899-9999848------86513224899985888874