HHsearch alignment for GI: 254780327 and conserved domain: pfam00270
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=98.27 E-value=1.1e-05 Score=65.75 Aligned_cols=128 Identities=23% Similarity=0.287 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHCCCC--EEEECCCCCHHHHHHHHHHHHHH---CCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 447999999970794--50673368068999999999860---7999569746927738759999999988294367635
Q gi|254780327|r 87 FDVQLLGGMILHKGC--VAEMKTGEGKTLAAVLPVYLNAL---SGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVF 161 (890)
Q Consensus 87 ~dvQl~g~~~l~~g~--iaem~TGEGKTL~a~l~~~lnal---~g~~vhvvTvNdyLA~RDa~~m~~~y~~lglsvg~~~ 161 (890)
T Consensus 1 ~~~Q~~~i~~~~~g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~~~~~~~ 80 (167)
T pfam00270 1 TPIQAEAIPAILEGKDVLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPTRELAEQIYEELKKLGKYLGLKVALLY 80 (167)
T ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 94599999999769978998899975899999999999874778987999906088888999886432102676404641
Q ss_pred CCCCHHHHHH--HCCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHH
Q ss_conf 9879889974--025635334434321112214320000221026674388612035456430
Q gi|254780327|r 162 HDLSDDKRRA--AYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEA 222 (890)
Q Consensus 162 ~~~~~~~r~~--~Y~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLiDea 222 (890)
T Consensus 81 g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~-~l~------~~~~~~~~~~~lIvDE~H~~~-~~~ 135 (167)
T pfam00270 81 GGDSPKEQLRKLKKGPDILVGTPGRLLD-LLE------RGGLLLKNLKLLVLDEAHRLL-DQG 135 (167)
T ss_pred CCCCHHHHHHHHCCCCCEEEECHHHHHH-HHH------HCCCCCCCEEEEEEECHHHHH-CCC
T ss_conf 7861788987640577079947899999-998------033121100389988088673-358