HHsearch alignment for GI: 254780327 and conserved domain: pfam00271
>pfam00271 Helicase_C Helicase conserved C-terminal domain. The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.
Probab=95.98 E-value=0.021 Score=39.07 Aligned_cols=74 Identities=32% Similarity=0.379 Sum_probs=51.1
Q ss_pred HHHHCCCCHHHHHHHHH--HHHHHHHHH-HCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 99860771022310224--778888875-305587048875024466554027675578886511357553008999999
Q gi|254780327|r 458 QLRKHKFTKFQILNALY--HEKEAYIIS-QAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMI 534 (890)
Q Consensus 458 ~L~~~~~~~h~vLNAk~--~~~Ea~Iia-~AG~~g~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (890)
T Consensus 2 ~l~~~g~-~~~~i~g~~~~~~R~~~~~~f~~~-~~~ilv~t~~~~~Gid~~----------------------------- 50 (78)
T pfam00271 2 LLRKPGI-KVARLHGGLSQEEREEILEDFRNG-KSKVLVATDVAGRGIDLP----------------------------- 50 (78)
T ss_pred CHHHCCC-CEEEEECCCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCC-----------------------------
T ss_conf 4556898-599986979999999999999879-973999925652567787-----------------------------
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCCCC
Q ss_conf 998776433345407627998267753233554205434566
Q gi|254780327|r 535 QEEVQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQG 576 (890)
Q Consensus 535 ~~~~~~~~~~v~~~GGL~VigterhesrRid~QlrGRagRQG 576 (890)
T Consensus 51 --------------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 78 (78)
T pfam00271 51 --------------DVNVVINYDLPWNPASYIQRIGRAGRAG 78 (78)
T ss_pred --------------CCCEEEEECCCCCHHHHHHHHCCCCCCC
T ss_conf --------------8999999789969899999972687799