HHsearch alignment for GI: 254780327 and conserved domain: pfam07517
>pfam07517 SecA_DEAD SecA DEAD-like domain. SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Probab=100.00 E-value=0 Score=1164.77 Aligned_cols=380 Identities=62% Similarity=0.936 Sum_probs=370.7
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 99871885573589999999999842288883898999999999999997399888966999999999957660876844
Q gi|254780327|r 9 ASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLDDLLVPAFAVVREVARRTLGMRPFD 88 (890)
Q Consensus 9 ~~k~~~~~~~~~l~~~~~~~~~in~~e~~~~~lsd~~l~~~t~~~~~~~~~g~~l~~~l~eafa~~rea~~R~lg~~~~d 88 (890)
T Consensus 1 l~~~~~~~~~~~lk~~~~~v~~in~le~~~~~lsd~eL~~~t~~~k~~~~~g~~ld~~l~eafA~vrEa~~R~lg~r~yd 80 (381)
T pfam07517 1 LKKLFGSKNERDLKRLRKIVDQINALEEEYKALSDEELRAKTQELRKRLRQGETLDDILPEAFALVREAAKRVLGMRHYD 80 (381)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 96213893188899999999999986999871899999999999999997799768888999999999999994882452
Q ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHH
Q ss_conf 79999999707945067336806899999999986079995697469277387599999999882943676359879889
Q gi|254780327|r 89 VQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDK 168 (890)
Q Consensus 89 vQl~g~~~l~~g~iaem~TGEGKTL~a~l~~~lnal~g~~vhvvTvNdyLA~RDa~~m~~~y~~lglsvg~~~~~~~~~~ 168 (890)
T Consensus 81 vQl~ggi~L~~G~IaEM~TGEGKTL~atl~a~l~AL~Gk~VhvvTvNdYLA~RDae~m~~vy~~LGLsvg~i~~~~~~~e 160 (381)
T pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVITSDMSPEE 160 (381)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHH
T ss_conf 69998999704872588769981199999999997379974899758888688999979999984860542278898488
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 97402563533443432111221432000022102667438861203545643024215238876524787874345443
Q gi|254780327|r 169 RRAAYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSIIIQ 248 (890)
Q Consensus 169 r~~~Y~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLiDeartPLiIsg~~~~~~~~~~~~~~~~~~ 248 (890)
T Consensus 161 rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDEArtPLIISg~~~~~~~~y~~~~~~~~~ 240 (381)
T pfam07517 161 RREAYNCDITYGTNSELGFDYLRDNMALSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPVEDESELYLIADALVKK 240 (381)
T ss_pred HHHHHHCCCEECCHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEECCCHHEEECCCCCCEECCCCCCCCHHHHHHHHHHHH
T ss_conf 89875166055032232144532344158254345777769997451121204678635407887630589999999998
Q ss_pred HCCC-CEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEE
Q ss_conf 0135-514414444322014679999863101688452475760013389999999999998526973161089378975
Q gi|254780327|r 249 LHPS-DYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVIID 327 (890)
Q Consensus 249 l~~~-dy~id~~~~~v~lt~~G~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~~Yiv~~~~v~ivD 327 (890)
T Consensus 241 l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~----~~~~~~~~~~i~~aL~A~~l~~~d~dYiV~d~~V~IvD 316 (381)
T pfam07517 241 LKEDEDYEDDEKRRNVLLTEEGIKKAEELLLIDLLYDE----WAENLELLHHVNQALKAHHLFERDVDYIVRDGEVVIVD 316 (381)
T ss_pred HHCCCCCEEECCCCEEEEECCHHHHHHHHHCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEE
T ss_conf 65157604640235324423467899998254676664----41013899999999999999866981799899899997
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHH
Q ss_conf 54585156862112348999999730248431256643488998303200001343054899999
Q gi|254780327|r 328 EFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELA 392 (890)
Q Consensus 328 e~TGr~~~gr~~~~GlhQaieaKe~v~i~~e~~t~a~it~qn~Fr~y~kl~GmTGTa~te~~Ef~ 392 (890)
T Consensus 317 e~TGR~m~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kL~GMTGTA~te~~Ef~ 381 (381)
T pfam07517 317 EFTGRIMEGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLAGMTGTAKTEAEEFR 381 (381)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHCCHHCCCCCCCHHHHHHCC
T ss_conf 88894788984677899999987299877675556777688898645152236878666687529