HHsearch alignment for GI: 254780327 and conserved domain: smart00487

Probab=97.76  E-value=0.00019  Score=55.62  Aligned_cols=128  Identities=23%  Similarity=0.107  Sum_probs=84.1

Q ss_pred             CCCCCCHHHHHHHHHHCC---CCEEEECCCCCHHHHHHHHHHHHHHCC--CCCEEECCCCHHHHHHHHHHHHHHHHH---
Q ss_conf             087684479999999707---945067336806899999999986079--995697469277387599999999882---
Q gi|254780327|r   82 LGMRPFDVQLLGGMILHK---GCVAEMKTGEGKTLAAVLPVYLNALSG--KGVHVVTVNDYLARRDSNTMSAIYKFL---  153 (890)
Q Consensus        82 lg~~~~dvQl~g~~~l~~---g~iaem~TGEGKTL~a~l~~~lnal~g--~~vhvvTvNdyLA~RDa~~m~~~y~~l---  153 (890)
T Consensus         5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~P~~~l~~---q~~~~~~~~~~~~   81 (201)
T smart00487        5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAE---QWAEELKKLGPSL   81 (201)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH---HHHHHHHHCCCCC
T ss_conf             7999998899999999838998899899996099999999999863389975999908599999---9998860102102


Q ss_pred             -CCCEEEECCCCCHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHH
Q ss_conf             -9436763598798899740256--35334434321112214320000221026674388612035456
Q gi|254780327|r  154 -GLSTGVVFHDLSDDKRRAAYAC--DITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFI  219 (890)
Q Consensus       154 -glsvg~~~~~~~~~~r~~~Y~~--di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLi  219 (890)
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~-------~~~~~~~~vIiDE~H~~~~  143 (201)
T smart00487       82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-------LELSNVDLVILDEAHRLLD  143 (201)
T ss_pred             EEEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCC-------CCCCCCEEEEEECHHHHHC
T ss_conf             0445565247737999999975999899955899999997275-------4525431999989677512