HHsearch alignment for GI: 254780327 and conserved domain: smart00490
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=96.74 E-value=0.0051 Score=44.05 Aligned_cols=79 Identities=33% Similarity=0.321 Sum_probs=57.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHH--HHHHHHHHHH-HCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHH
Q ss_conf 999999986077102231022--4778888875-3055870488750244665540276755788865113575530089
Q gi|254780327|r 453 EYLASQLRKHKFTKFQILNAL--YHEKEAYIIS-QAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNK 529 (890)
Q Consensus 453 e~ls~~L~~~~~~~h~vLNAk--~~~~Ea~Iia-~AG~~g~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~ 529 (890)
T Consensus 1 ~~l~~~l~~~g~-~~~~i~g~~~~~~R~~~~~~f~~~-~~~ilv~t~~~~~Gidl~------------------------ 54 (82)
T smart00490 1 EELAELLKELGI-KVARLHGGLSQEEREEILEKFNNG-KIKVLVATDVAERGLDLP------------------------ 54 (82)
T ss_pred CHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHHHCC-CCEEEEEEEEEEEECCCC------------------------
T ss_conf 978999988899-199998969999999999999879-971999950242114898------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCCCC
Q ss_conf 99999998776433345407627998267753233554205434566
Q gi|254780327|r 530 RIKMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQG 576 (890)
Q Consensus 530 ~~~~~~~~~~~~~~~v~~~GGL~VigterhesrRid~QlrGRagRQG 576 (890)
T Consensus 55 -------------------~~~~vI~~~~~~~~~~~~Q~~GR~~R~g 82 (82)
T smart00490 55 -------------------GVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred -------------------CCCEEEEECCCCCHHHHHHHHCCCCCCC
T ss_conf -------------------8999999789969899999972587899