RPSBLAST alignment for GI: 254780327 and conserved domain: TIGR00963

>gnl|CDD|162135 TIGR00963, secA, preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. Length = 745
 Score = 1048 bits (2711), Expect = 0.0
 Identities = 411/789 (52%), Positives = 538/789 (68%), Gaps = 49/789 (6%)

Query: 31  INELEKEISHLSDDSLANKTSEFKERIN-NGETLDDLLVPAFAVVREVARRTLGMRPFDV 89
           IN LE++   LSD+ L  KT+EFK+R+   GETLDDLL  AFAVVRE ++R LGMRPFDV
Sbjct: 1   INALEEDYEKLSDEELRAKTNEFKDRLQKQGETLDDLLPEAFAVVREASKRVLGMRPFDV 60

Query: 90  QLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGVHVVTVNDYLARRDSNTMSAI 149
           QL+GG+ LHKG +AEMKTGEGKTL A LP YLNAL+GKGVHVVTVNDYLA+RD+  M  +
Sbjct: 61  QLIGGIALHKGKIAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQV 120

Query: 150 YKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFA 209
           Y+FLGLS G++   +S ++RR AYACDITY TNNELGFDYLRDNM + + + VQR  +FA
Sbjct: 121 YRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFA 180

Query: 210 IVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSIIIQLHPS-DYEIDEKQRTVHFSEK 268
           I+DEVDSI IDEARTPLIISGP E  ++LY   +     L     YE+DEK R V  +EK
Sbjct: 181 IIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEK 240

Query: 269 GTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVIIDE 328
           G ++ E+LL  +N      LY  EN  ++H INNALK+  LF ++ DYIV   EVVI+DE
Sbjct: 241 GIKKAEDLLGVDN------LYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDE 294

Query: 329 FTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEA 388
           FTGR+M GRR+SDG HQA+EAKE V+IQ ENQTL++IT+QN+F  Y KLSGMTGTA TE 
Sbjct: 295 FTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEE 354

Query: 389 EELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPS 448
           EE   IYNL+V+ VPTN PVIR D  D +Y+T EEK+ A++ EI + H KGQPVLVGT S
Sbjct: 355 EEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTS 414

Query: 449 IEKSEYLASQLRKHKFTKFQILNALYHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGG 508
           +EKSE L++ L++       +LNA  HE+EA II+QAG  GAVTIATNMAGRGTDI+L  
Sbjct: 415 VEKSELLSNLLKERGI-PHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKL-- 471

Query: 509 NVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQL 568
                                             E+    GGLYVI TERHESRRIDNQL
Sbjct: 472 ----------------------------------EEVKELGGLYVIGTERHESRRIDNQL 497

Query: 569 RGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRMESFLRKIGLKEGEAIIHPWINKAIERAQ 628
           RGRSGRQGDPG S+F+LSL+D+LMRIFG  R+E  +R++GL++ E I    + +A+E AQ
Sbjct: 498 RGRSGRQGDPGSSRFFLSLEDNLMRIFGGDRLEGLMRRLGLEDDEPIESKMVTRALESAQ 557

Query: 629 QKVEARNFETRKNLLKYDDVLNEQRKIIFEQRLEIIDTENILEIIADMRHDTLHNIVEKC 688
           ++VEARNF+ RK LL+YDDVLN+QR++I+ +R  I+++E++ E+I  M   TL  IV+  
Sbjct: 558 KRVEARNFDIRKQLLEYDDVLNKQREVIYAERRRILESEDLSELILQMLESTLDEIVDAY 617

Query: 689 IPNNSYPEKWDIKKLETEIYEIFGIHFPVLEWRNDNGIDHTEMSKRIFAKADKIAEDQEN 748
           I      E+WD++ L  ++  +F +    L   +   +   ++ + +  K     +++E 
Sbjct: 618 INEQKPSEEWDLEGLIEKLKTLF-LLDGDLTPEDLENLTSEDLKELLLEKIRAAYDEKEA 676

Query: 749 SFGTEK---MQALGRHILLHTLDSFWREHMARLEHSRSIIGFRGYAQRDPLQEYKSEAFG 805
              +E+   M+   R++LL ++D  W+EH+  ++  R  IG R Y Q+DPL EYK+E F 
Sbjct: 677 ELESERPGLMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFN 736

Query: 806 FFNTLLTHL 814
            F  +L  +
Sbjct: 737 LFLEMLEDI 745