RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780327|ref|YP_003064740.1| preprotein translocase subunit
SecA [Candidatus Liberibacter asiaticus str. psy62]
(890 letters)
>gnl|CDD|183826 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.
Length = 830
Score = 1439 bits (3728), Expect = 0.0
Identities = 490/884 (55%), Positives = 615/884 (69%), Gaps = 58/884 (6%)
Query: 5 LAKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLD 64
+ L K+ N+R L+ V IN LE E+ LSD+ L KT+EFKER+ GETLD
Sbjct: 1 MLGLLKKIFGSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLD 60
Query: 65 DLLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNAL 124
DLL AFAVVRE ++R LGMR FDVQL+GGM+LH+G +AEMKTGEGKTL A LP YLNAL
Sbjct: 61 DLLPEAFAVVREASKRVLGMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNAL 120
Query: 125 SGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNE 184
+GKGVHVVTVNDYLA+RD+ M +Y+FLGLS GV+ +S ++RR AYA DITY TNNE
Sbjct: 121 TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYAADITYGTNNE 180
Query: 185 LGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDS 244
GFDYLRDNM + + VQRG N+AIVDEVDSI IDEARTPLIISGP ED S+LY+ +
Sbjct: 181 FGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANK 240
Query: 245 IIIQLH-PSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNA 303
I+ L DY +DEK RTV +E+G E+ E+LL EN LY EN+A+VH +N A
Sbjct: 241 IVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIEN------LYDPENIALVHHLNQA 294
Query: 304 LKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLS 363
L++H LF R+ DYIV EVVI+DEFTGR+MPGRRYSDG HQA+EAKE VKIQ ENQTL+
Sbjct: 295 LRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLA 354
Query: 364 SITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEE 423
SITFQNYF Y KL+GMTGTA TEAEE IYNLDV+ +PTN P+IRID D IY+T +E
Sbjct: 355 SITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKE 414
Query: 424 KYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKEAYIIS 483
K+ A++ +I + HKKGQPVLVGT SIEKSE L+ L+K +LNA HE+EA II+
Sbjct: 415 KFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGI-PHNVLNAKNHEREAEIIA 473
Query: 484 QAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKE 543
QAG PGAVTIATNMAGRGTDI+LGGN M L EE ++I I+ E Q E
Sbjct: 474 QAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALL-----EEETEEQIAKIKAEWQEEHE 528
Query: 544 KAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRMESF 603
+ + AGGL+VI TERHESRRIDNQLRGRSGRQGDPG S+FYLSL+DDLMRIFGS R++
Sbjct: 529 EVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGM 588
Query: 604 LRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQRLEI 663
+ ++G+KEGEAI H + +AIE AQ+KVE RNF+ RK LL+YDDV+N+QRK+I+ QR EI
Sbjct: 589 MDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQRKVIYAQRNEI 648
Query: 664 IDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEWRND 723
++ E++ E I DMR D + ++V+ IP SY E WD++ LE + FG+ P+ EW +
Sbjct: 649 LEGEDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEALKTDFGLELPIEEWLEE 708
Query: 724 NGIDHTEMSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSFWREHMARLEHSRS 783
G+D E+ +RI A++ E++E G E+M+ R ++L LD+ WREH+A ++H R
Sbjct: 709 -GLDEEELRERILEAAEEAYEEKEEELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQ 767
Query: 784 IIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIEPNNINNQELNNSLPYIA 843
IG RGYAQ+DPLQEYK E F F +L ++++VV + +++ +
Sbjct: 768 GIGLRGYAQKDPLQEYKREGFELFEEMLDSIKEEVVRTLMKVQID--------------- 812
Query: 844 ENDHGPVIQKENELDTPNVCKTSKIKRNHPCPCGSGKKYKHCHG 887
PCPCGSGKKYKHCHG
Sbjct: 813 -----------------------------PCPCGSGKKYKHCHG 827
>gnl|CDD|162135 TIGR00963, secA, preprotein translocase, SecA subunit. The
proteins SecA-F and SecY, not all of which are
necessary, comprise the standard prokaryotic protein
translocation apparatus. Other, specialized
translocation systems also exist but are not as broadly
distributed. This model describes SecA, an essential
member of the apparatus.
Length = 745
Score = 1048 bits (2711), Expect = 0.0
Identities = 411/789 (52%), Positives = 538/789 (68%), Gaps = 49/789 (6%)
Query: 31 INELEKEISHLSDDSLANKTSEFKERIN-NGETLDDLLVPAFAVVREVARRTLGMRPFDV 89
IN LE++ LSD+ L KT+EFK+R+ GETLDDLL AFAVVRE ++R LGMRPFDV
Sbjct: 1 INALEEDYEKLSDEELRAKTNEFKDRLQKQGETLDDLLPEAFAVVREASKRVLGMRPFDV 60
Query: 90 QLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGVHVVTVNDYLARRDSNTMSAI 149
QL+GG+ LHKG +AEMKTGEGKTL A LP YLNAL+GKGVHVVTVNDYLA+RD+ M +
Sbjct: 61 QLIGGIALHKGKIAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQV 120
Query: 150 YKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFA 209
Y+FLGLS G++ +S ++RR AYACDITY TNNELGFDYLRDNM + + + VQR +FA
Sbjct: 121 YRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFA 180
Query: 210 IVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSIIIQLHPS-DYEIDEKQRTVHFSEK 268
I+DEVDSI IDEARTPLIISGP E ++LY + L YE+DEK R V +EK
Sbjct: 181 IIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEK 240
Query: 269 GTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVIIDE 328
G ++ E+LL +N LY EN ++H INNALK+ LF ++ DYIV EVVI+DE
Sbjct: 241 GIKKAEDLLGVDN------LYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDE 294
Query: 329 FTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEA 388
FTGR+M GRR+SDG HQA+EAKE V+IQ ENQTL++IT+QN+F Y KLSGMTGTA TE
Sbjct: 295 FTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEE 354
Query: 389 EELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPS 448
EE IYNL+V+ VPTN PVIR D D +Y+T EEK+ A++ EI + H KGQPVLVGT S
Sbjct: 355 EEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTS 414
Query: 449 IEKSEYLASQLRKHKFTKFQILNALYHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGG 508
+EKSE L++ L++ +LNA HE+EA II+QAG GAVTIATNMAGRGTDI+L
Sbjct: 415 VEKSELLSNLLKERGI-PHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKL-- 471
Query: 509 NVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQL 568
E+ GGLYVI TERHESRRIDNQL
Sbjct: 472 ----------------------------------EEVKELGGLYVIGTERHESRRIDNQL 497
Query: 569 RGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRMESFLRKIGLKEGEAIIHPWINKAIERAQ 628
RGRSGRQGDPG S+F+LSL+D+LMRIFG R+E +R++GL++ E I + +A+E AQ
Sbjct: 498 RGRSGRQGDPGSSRFFLSLEDNLMRIFGGDRLEGLMRRLGLEDDEPIESKMVTRALESAQ 557
Query: 629 QKVEARNFETRKNLLKYDDVLNEQRKIIFEQRLEIIDTENILEIIADMRHDTLHNIVEKC 688
++VEARNF+ RK LL+YDDVLN+QR++I+ +R I+++E++ E+I M TL IV+
Sbjct: 558 KRVEARNFDIRKQLLEYDDVLNKQREVIYAERRRILESEDLSELILQMLESTLDEIVDAY 617
Query: 689 IPNNSYPEKWDIKKLETEIYEIFGIHFPVLEWRNDNGIDHTEMSKRIFAKADKIAEDQEN 748
I E+WD++ L ++ +F + L + + ++ + + K +++E
Sbjct: 618 INEQKPSEEWDLEGLIEKLKTLF-LLDGDLTPEDLENLTSEDLKELLLEKIRAAYDEKEA 676
Query: 749 SFGTEK---MQALGRHILLHTLDSFWREHMARLEHSRSIIGFRGYAQRDPLQEYKSEAFG 805
+E+ M+ R++LL ++D W+EH+ ++ R IG R Y Q+DPL EYK+E F
Sbjct: 677 ELESERPGLMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFN 736
Query: 806 FFNTLLTHL 814
F +L +
Sbjct: 737 LFLEMLEDI 745
>gnl|CDD|183827 PRK12906, secA, preprotein translocase subunit SecA; Reviewed.
Length = 796
Score = 970 bits (2509), Expect = 0.0
Identities = 392/831 (47%), Positives = 531/831 (63%), Gaps = 60/831 (7%)
Query: 11 KLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLDDLLVPA 70
K +++R L+ +N LE E LSD+ L KT EF++RI +GE+LDDLL A
Sbjct: 6 KKWFDNDKRELKRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDRIKDGESLDDLLPEA 65
Query: 71 FAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGVH 130
FAV RE A+R LG+RPFDVQ++GG++LH+G +AEMKTGEGKTL A LPVYLNAL+GKGVH
Sbjct: 66 FAVAREGAKRVLGLRPFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVH 125
Query: 131 VVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNELGFDYL 190
VVTVN+YL+ RD+ M +Y++LGL+ G+ + +S D++RAAY CDITY TN+ELGFDYL
Sbjct: 126 VVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYL 185
Query: 191 RDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSIIIQLH 250
RDNM + MVQR N+AIVDEVDSI IDEARTPLIISG E +DLY D + L
Sbjct: 186 RDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLI 245
Query: 251 ------------PSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVH 298
DY+IDEK +T+ +E+G + E+L +N LY EN A+ H
Sbjct: 246 KDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDN------LYDSENTALAH 299
Query: 299 LINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPE 358
I+ AL+++ + L++ DY+V EV+I+DEFTGR+M GRRYSDG HQA+EAKE VKIQ E
Sbjct: 300 HIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEE 359
Query: 359 NQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIY 418
NQTL++IT+QN+F Y+KLSGMTGTA TE EE IYN++VI +PTN PVIR D D +Y
Sbjct: 360 NQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLY 419
Query: 419 RTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKE 478
T + K+ A++ EI + H KGQPVLVGT +IE SE L+ L + +LNA H KE
Sbjct: 420 PTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGI-PHAVLNAKNHAKE 478
Query: 479 AYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEV 538
A II AG GAVTIATNMAGRGTDI+LG V EL
Sbjct: 479 AEIIMNAGQRGAVTIATNMAGRGTDIKLGPGVK-----EL-------------------- 513
Query: 539 QSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSP 598
GGL VI TERHESRRIDNQLRGRSGRQGDPG S+FYLSL+DDLMR FGS
Sbjct: 514 ----------GGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFGSD 563
Query: 599 RMESFLRKIGL-KEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIF 657
R+++FL ++G+ + + I I + +E AQ++VE N++TRK LL+YDDV+ EQR++I+
Sbjct: 564 RVKAFLDRLGMNDDDQVIESRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIY 623
Query: 658 EQRLEIID-TENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFP 716
+QR+++I+ +++ E++ M T+ V+ + + WD+ L I
Sbjct: 624 KQRMQVINEDKDLKEVLMPMIKRTVDRQVQMYTQGD--KKDWDLDALRDFIVSAM-PDEE 680
Query: 717 VLEWRNDNGIDHTEMSKRIFAKADKIAEDQENSFGTE-KMQALGRHILLHTLDSFWREHM 775
++ + G E+ KR+ + ++E G +M + ++L +DS W +H+
Sbjct: 681 TFDFEDLKGKSPEELKKRLLDIVEDNYAEKEKQLGDPTQMLEFEKVVILRVVDSHWTDHI 740
Query: 776 ARLEHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIE 826
++ R IG RGY Q +PL EY+ E + F +++++ DV + +
Sbjct: 741 DAMDQLRQSIGLRGYGQLNPLVEYQEEGYRMFEEMISNIDYDVTRLFMKAQ 791
>gnl|CDD|183863 PRK13107, PRK13107, preprotein translocase subunit SecA; Reviewed.
Length = 908
Score = 926 bits (2394), Expect = 0.0
Identities = 445/911 (48%), Positives = 610/911 (66%), Gaps = 35/911 (3%)
Query: 5 LAKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLD 64
KL +K+ N+R L+ VI IN LE + L+D+ L KT+EF+ER+ GETLD
Sbjct: 2 FGKLLTKVFGSRNDRTLKGLGKVVIKINALEADYEKLTDEELKAKTAEFRERLAAGETLD 61
Query: 65 DLLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNAL 124
D++ AFA VRE ++R MR FDVQLLGGM+L +AEM+TGEGKTL A LP YLNAL
Sbjct: 62 DIMAEAFATVREASKRVFEMRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNAL 121
Query: 125 SGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNE 184
+GKGVHV+TVNDYLARRD+ +++FLGL+ G+ L +++AAY DITY TNNE
Sbjct: 122 TGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAAYNADITYGTNNE 181
Query: 185 LGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDS 244
GFDYLRDNM + + VQR ++A++DEVDSI IDEARTPLIISG ED S+LY I++
Sbjct: 182 FGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKINT 241
Query: 245 IIIQLHPS------------DYEIDEKQRTVHFSEKGTERIEELLHGENLLKSG-GLYSF 291
+I L DY IDEK + VHF+E+G E++E LL +L G LYS
Sbjct: 242 LIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSA 301
Query: 292 ENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKE 351
N++++H +N AL++HTLF ++ DYIV +EV+I+DE TGR MPGRR+S+G HQA+EAKE
Sbjct: 302 ANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKE 361
Query: 352 RVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRI 411
V IQ ENQTL+SITFQNYF +Y KL+GMTGTA TEA E +IY LD + VPTN P++R
Sbjct: 362 GVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRK 421
Query: 412 DEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILN 471
D D +Y T++EKY AII +I D ++GQPVLVGT SIE+SE LA + K K ++LN
Sbjct: 422 DMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPH-EVLN 480
Query: 472 ALYHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRI 531
A +HE+EA I++QAG GAVTIATNMAGRGTDI LGGN M IE L N + E+
Sbjct: 481 AKFHEREAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEIE-ALENPTAEQKAK--- 536
Query: 532 KMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDL 591
I+ + Q ++ + AGGL+++ TERHESRRIDNQLRGR+GRQGD G S+FYLS++D L
Sbjct: 537 --IKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSL 594
Query: 592 MRIFGSPRMESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNE 651
MRIF S R+ ++K+G++EGEAI HPW+++AIE AQ+KVEARNF+ RK LL++DDV N+
Sbjct: 595 MRIFASDRVSGMMKKLGMEEGEAIEHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVAND 654
Query: 652 QRKIIFEQRLEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIF 711
QR++++ QR E++D E+I + I +++ D ++ ++++ IP S E WD+ LE +++ F
Sbjct: 655 QRQVVYAQRNELMDAESIEDTIKNIQDDVINGVIDQYIPPQSVEELWDVPGLEQRLHQEF 714
Query: 712 GIHFPVLEWRNDNGIDHTE-MSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSF 770
+ P+ EW + H E + +RI + +E G + ++ + ++L TLD
Sbjct: 715 MLKLPIQEWLDKEDDLHEETLRERIVTSWSDAYKAKEEMVGAQVLRQFEKAVMLQTLDGL 774
Query: 771 WREHMARLEHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIEPNNI 830
W+EH+A ++H R I RGYAQ++P QEYK E+F F LL L+ DV+S +++++
Sbjct: 775 WKEHLAAMDHLRQGIHLRGYAQKNPKQEYKRESFELFQQLLETLKHDVISVLSKVQVQAQ 834
Query: 831 NN----------QELNNSLPYIAENDHGPVIQKENELD----TPNVCKTSKIKRNHPCPC 876
++ ++ Y V ++ TP + K+ RN PCPC
Sbjct: 835 SDVEEMEARRREEDAKIQRDYQHAAAEALVGGEDESAALAAHTPMIRDGEKVGRNDPCPC 894
Query: 877 GSGKKYKHCHG 887
GSG+KYK CHG
Sbjct: 895 GSGRKYKQCHG 905
>gnl|CDD|183859 PRK13103, secA, preprotein translocase subunit SecA; Reviewed.
Length = 913
Score = 911 bits (2356), Expect = 0.0
Identities = 446/916 (48%), Positives = 596/916 (65%), Gaps = 40/916 (4%)
Query: 5 LAKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLD 64
A L KL NER ++ V +N E+++ LSD+ L KT+EFK R+ GETLD
Sbjct: 2 FAPLLKKLFGSKNEREVKRMLKTVQIVNAFEEQMVALSDEQLRAKTAEFKARLAKGETLD 61
Query: 65 DLLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNAL 124
LL AFAV RE +R +GMR FDVQL+GGM LH+G +AEM+TGEGKTL L VYLNAL
Sbjct: 62 QLLPEAFAVAREAGKRVMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNAL 121
Query: 125 SGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNE 184
SGKGVHVVTVNDYLARRD+N M +Y+FLGLS G+V +++RAAYA DITY TNNE
Sbjct: 122 SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYAADITYGTNNE 181
Query: 185 LGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDS 244
GFDYLRDNM + D QR NFA++DEVDSI IDEARTPLIISG ED S LY I+
Sbjct: 182 FGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINR 241
Query: 245 IIIQL------------HPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSG-GLYSF 291
+I +L + IDEK R V +E G + IEE+L LL G LYS
Sbjct: 242 LIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSA 301
Query: 292 ENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKE 351
N+ ++ + L++H LF RN +YIV +V++IDE TGR MPGRR S+G HQA+EAKE
Sbjct: 302 HNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKE 361
Query: 352 RVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRI 411
+ IQ E+QTL+S TFQNYF Y KLSGMTGTA TEA E IY LDV+ +P N P+ R
Sbjct: 362 NLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARK 421
Query: 412 DEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILN 471
D +D +Y T+EEKYAAII +I + G+PVLVGT +IE SE++++ L+K + ++LN
Sbjct: 422 DFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGI-EHKVLN 480
Query: 472 ALYHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRI 531
A YHEKEA II+QAG PGA+TIATNMAGRGTDI LGGN + + L N + E+ I
Sbjct: 481 AKYHEKEAEIIAQAGRPGALTIATNMAGRGTDILLGGNWEVEVA-ALENPTPEQ-----I 534
Query: 532 KMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDL 591
I+ + Q ++ I AGGL+VI++ERHESRRIDNQLRGR+GRQGDPG S+FYLSL+D L
Sbjct: 535 AQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSL 594
Query: 592 MRIFGSPRMESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNE 651
MRIF S R+++F++ +G++ GEAI H + AIE+AQ+KVE RNF+ RK LL++DDV NE
Sbjct: 595 MRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEGRNFDIRKQLLEFDDVANE 654
Query: 652 QRKIIFEQRLEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIF 711
QRK+I+ R ++ ENI E IA+ R + L+ + + IP S PE+WD+ LE + F
Sbjct: 655 QRKVIYHMRNSLLAAENIGETIAEFREEVLNATISQHIPPQSLPEQWDVAGLEAALASDF 714
Query: 712 GIHFPVLEWRNDNGIDHTE-MSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSF 770
+ P+ +W +++ + E + ++I + ++E+ G E ++ + ILL LD
Sbjct: 715 AVKLPIQQWLDEDDHLYEETLREKILEELLAAYNEKEDQAGAEALRTFEKQILLRVLDDL 774
Query: 771 WREHMARLEHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIEPNNI 830
W++H++ ++H R I RGYAQ++P QEYK E+F F LL +++D + ++ ++
Sbjct: 775 WKDHLSTMDHLRHGIHLRGYAQKNPKQEYKRESFTLFQELLDSIKRDTIRVLSHVQVRRE 834
Query: 831 NNQELNNSLPYIAE---------NDHGPVIQKENELD----------TPNVCKTSKIKRN 871
+ E L AE + P +++ + + V K+ RN
Sbjct: 835 DPAEEEARLRREAEELASRMQFQHAEAPGLEQPQLGEEEEEPAVAVASAPVRNEQKLGRN 894
Query: 872 HPCPCGSGKKYKHCHG 887
PC CGSGKK+KHCHG
Sbjct: 895 EPCWCGSGKKFKHCHG 910
>gnl|CDD|183860 PRK13104, secA, preprotein translocase subunit SecA; Reviewed.
Length = 896
Score = 880 bits (2274), Expect = 0.0
Identities = 459/899 (51%), Positives = 610/899 (67%), Gaps = 21/899 (2%)
Query: 5 LAKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLD 64
L+ L K+ NER LR V+AIN E ++ LS++ LA KT EFKER NNGE+LD
Sbjct: 2 LSTLIKKMFGSRNERTLRRMEKSVMAINAFEPKMQALSNEELAGKTQEFKERFNNGESLD 61
Query: 65 DLLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNAL 124
+LL AFA VREV+ RTLG+R FDVQL+GGM+LH+G +AEM+TGEGKTL A LP YLNA+
Sbjct: 62 ELLAEAFATVREVSLRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAI 121
Query: 125 SGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNE 184
SG+GVH+VTVNDYLA+RDS M IY+FLGL+ GV++ D+S +++ AY DI Y TNNE
Sbjct: 122 SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAYKADIVYGTNNE 181
Query: 185 LGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDS 244
GFDYLRDNM + D VQR NFAIVDEVDSI IDEARTPLIISG ED S+LY I+S
Sbjct: 182 YGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINS 241
Query: 245 IIIQLHPS-------DYEIDEKQRTVHFSEKGTERIEELLHGENLLKSG-GLYSFENVAI 296
+I QL DY IDEKQ+ H ++ G IEELL LL G LY N+ +
Sbjct: 242 LIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIML 301
Query: 297 VHLINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQ 356
+H +N ALK+H +F R+ DYIV ++VVI+DE TGR MPGRR+S+G HQA+EAKE V IQ
Sbjct: 302 MHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQ 361
Query: 357 PENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDE 416
ENQTL+SITFQN+F Y KLSGMTGTA TEA E IYNL+V+ +PTN +IR DE D
Sbjct: 362 NENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADL 421
Query: 417 IYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHE 476
+Y T +K+ AII ++ + + QPVLVGT SIE SE+L SQL K + K Q+LNA +HE
Sbjct: 422 VYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFL-SQLLKKENIKHQVLNAKFHE 480
Query: 477 KEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQE 536
KEA II++AG PGAVTIATNMAGRGTDI LGG++A + + A+ S++E + +++
Sbjct: 481 KEAQIIAEAGRPGAVTIATNMAGRGTDIVLGGSLAADLANLPADASEQE-----KEAVKK 535
Query: 537 EVQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFG 596
E Q ++ I AGGL +I +ERHESRRIDNQLRGR+GRQGDPG S+FYLSL+D+LMRIF
Sbjct: 536 EWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFA 595
Query: 597 SPRMESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKII 656
S R+ S +R++G++ GE I H + +AIE AQ+K+E +F+ RK LL YD+V N+QR++I
Sbjct: 596 SERVASMMRRLGMQPGEPIEHSLVTRAIENAQRKLEGHHFDVRKQLLDYDNVANDQRQVI 655
Query: 657 FEQRLEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFP 716
+ QR I+ + E++ MR + + ++V+ IP S ++WD + L + + F I P
Sbjct: 656 YTQRASIMAMTDTQEVVEMMREEVMDSLVDTYIPPQSLEDQWDPQALSDVLSDEFKIKAP 715
Query: 717 VLEW-RNDNGIDHTEMSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSFWREHM 775
V +W D+ I ++ ++I A A + +++ G + + I+L TLD+ WREH+
Sbjct: 716 VPDWIDKDHSIQPEQIKEKILALAIEHYDEKVRKVGRPVISQFEKSIILQTLDNHWREHL 775
Query: 776 ARLEHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIE---PNNINN 832
A ++ R I RGYAQ+DP QEYK EAF F +L +L+ +V+ ++ +E +
Sbjct: 776 AAMDQLRQGIHLRGYAQKDPKQEYKKEAFSLFTMMLDNLKYEVIRILSSVEIQTEEDAQV 835
Query: 833 QELNNSLPYIAEND--HGPVIQKENELDTPNVCK-TSKIKRNHPCPCGSGKKYKHCHGS 888
E I + + H + + + +T + KI RN PCPCGSGKKYK CHGS
Sbjct: 836 VEEQRRADQIRKMNLMHESLSENDEASETQTFRRQEKKIGRNDPCPCGSGKKYKACHGS 894
>gnl|CDD|181694 PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed.
Length = 790
Score = 857 bits (2217), Expect = 0.0
Identities = 353/832 (42%), Positives = 515/832 (61%), Gaps = 61/832 (7%)
Query: 8 LASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLDDLL 67
+ KLL ++RRL+ Y V IN+LE ++S LSD+ L KT EFKER+ +G+TLDD+L
Sbjct: 1 MKKKLLGDIDKRRLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDIL 60
Query: 68 VPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGK 127
AFAVVRE A+R LGMRP+DVQL+G ++LH+G +AEM+TGEGKTL A +P+YLNAL GK
Sbjct: 61 PEAFAVVREAAKRVLGMRPYDVQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGK 120
Query: 128 GVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSD-DKRRAAYACDITYITNNELG 186
GVH++TVNDYLA+RD+ M +Y+FLGL+ G+ F D+ D +++A Y DI Y TN+ELG
Sbjct: 121 GVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELG 180
Query: 187 FDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSII 246
FDYLRDN+ + D VQR N+AI+DE+DSI +DEA+TPLIISG S+LY +
Sbjct: 181 FDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFV 240
Query: 247 IQLHPS-DYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALK 305
L DYE DE+++ V +++G E+ E +NL YS E+ + I AL+
Sbjct: 241 KTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNL------YSLEHQVLYRHIILALR 294
Query: 306 SHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSI 365
+H LF R+ DYIV E+V++D FTGR++PGR+ DG HQA+EAKE V+I EN+T++SI
Sbjct: 295 AHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASI 354
Query: 366 TFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKY 425
T QN F + KLSGMTGTA TE +E +YN++V+++PTN P+IRID D+++ T +EKY
Sbjct: 355 TIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKY 414
Query: 426 AAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKEAYIISQA 485
A+I E+ + H+ G+PVL+GT SIE+SE + L + +LNA KEA II++A
Sbjct: 415 KAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIP-HNLLNAKNAAKEAQIIAEA 473
Query: 486 GIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKA 545
G GAVT+ATNMAGRGTDI+LG V HEL
Sbjct: 474 GQKGAVTVATNMAGRGTDIKLGEGV-----HEL--------------------------- 501
Query: 546 IVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRMESFLR 605
GGL VI TER ESRR+D QLRGRSGRQGDPG S+F++SL+DDL++ F +E +
Sbjct: 502 ---GGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEELEKLKK 558
Query: 606 KIGLKE---GEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQRLE 662
K+ + + ++K + +AQ+ E + R+ L+ DDV+N QR +++++R
Sbjct: 559 KLKTDAQRLTGLLFNRKVHKIVVKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNR 618
Query: 663 IIDTE--NILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEW 720
+++ + ++++I+ M L + E+ + S E+W + L ++ EI
Sbjct: 619 LLEEDDRDLIDIVILMIDVYLEAVAEEYLLEKSLLEEWIYENLSFQLNEILS-------- 670
Query: 721 RNDNGIDHTEMSKRIFAKADKIAEDQENSFG-TEKMQALGRHILLHTLDSFWREHMARLE 779
N N D E+ + + +A+K +++ N R + L +D W E + L+
Sbjct: 671 -NTNFPDKKEVVQFLLEEAEKQLKEKRNKLPSATLYNQFLRKVALKAIDQNWVEQVDALQ 729
Query: 780 HSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIAR--IEPNN 829
+ IG R Y QR+P++EY+ EA F + +++KD+V + + +
Sbjct: 730 QLKEGIGLRQYGQRNPIREYQKEALESFEYMYENIKKDMVRNLLLSLLVFDK 781
>gnl|CDD|183825 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 803 bits (2075), Expect = 0.0
Identities = 347/829 (41%), Positives = 493/829 (59%), Gaps = 58/829 (6%)
Query: 6 AKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLDD 65
K S E R+ K IN+LE +L+D+ LANKT+EFK+R+ NGETL+D
Sbjct: 1 MKFLKLFFFKSTEMRIAEKILK--QINDLEPYYRNLTDEELANKTNEFKDRLKNGETLED 58
Query: 66 LLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALS 125
+ V AFAV RE +R LG RP+DVQ++GG+IL G VAEMKTGEGKT+ ++ PVYLNAL+
Sbjct: 59 IRVEAFAVAREATKRVLGKRPYDVQIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALT 118
Query: 126 GKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNEL 185
GKGV V TVN+YLA RD+ M ++ FLGLS G+ ++ + +R AYACDITY ++EL
Sbjct: 119 GKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREAYACDITYSVHSEL 178
Query: 186 GFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSI 245
GFDYLRDNM + + VQRG NF ++DEVDSI IDEA+TPLIISG + S+LY D
Sbjct: 179 GFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQF 238
Query: 246 IIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALK 305
+ L DY+IDE+ + + +EKG ++ + +N LY EN +VH I NAL+
Sbjct: 239 VRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKN------LYDIENSELVHRIQNALR 292
Query: 306 SHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSI 365
+H + + +YIV ++ ++D+FTGR+M GR YS+G QA++AKE V+I+PE +TL++I
Sbjct: 293 AHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATI 352
Query: 366 TFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKY 425
T+QN+F ++KLSGMTGTA TE +E +IYN+ V VPTN PVIR DE D I+ T K+
Sbjct: 353 TYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKW 412
Query: 426 AAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKEAYIISQA 485
A++ E+ HKKGQP+L+GT +E SE L L + +LNA + +EA II++A
Sbjct: 413 KAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLE-ANIPHTVLNAKQNAREAEIIAKA 471
Query: 486 GIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKA 545
G GA+TIATNMAGRGTDI+L +EV L
Sbjct: 472 GQKGAITIATNMAGRGTDIKLS----------------------------KEVLEL---- 499
Query: 546 IVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRMESFLR 605
GGLYV+ T++ ESRRIDNQLRGRSGRQGD G S+F++SL D L R F + +
Sbjct: 500 ---GGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRFSN--FDKIKE 554
Query: 606 KIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQRLEIID 665
+ I + +KA+ AQ+K+E NF+TRKN+L YDDV+ +QR +I+ QR I+
Sbjct: 555 AFKKLGDDEIKSKFFSKALLNAQKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILI 614
Query: 666 TENILEIIADMRHDTLHNIVEK---CIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEWRN 722
+++ +I M + I++ + NN+ K ++ L + I F ++ N
Sbjct: 615 ADDLSHVIEKMISRAVEQILKNSFIILKNNTINYKELVEFLNDNLLRITHFKFSEKDFEN 674
Query: 723 ---DNGIDHTE--MSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSFWREHMAR 777
+ + +++ F K I + R+I+L LD +W+ H+
Sbjct: 675 YHKEELAQYLIEALNEIYFKKRQVILDK----IALNTFFESERYIILSALDKYWQNHIDT 730
Query: 778 LEHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIE 826
++ RS + Y+Q++P Q Y E FN LL + DV+ +
Sbjct: 731 MDKLRSGVNLVQYSQKNPYQVYTEEGTKKFNILLQEIAYDVIVSLFNNP 779
>gnl|CDD|163426 TIGR03714, secA2, accessory Sec system translocase SecA2. Members
of this protein family are homologous to SecA and part
of the accessory Sec system. This system, including both
five core proteins for export and a variable number of
proteins for glycosylation, operates in certain
Gram-positive pathogens for the maturation and delivery
of serine-rich glycoproteins such as the cell surface
glycoprotein GspB in Streptococcus gordonii.
Length = 762
Score = 651 bits (1682), Expect = 0.0
Identities = 304/810 (37%), Positives = 455/810 (56%), Gaps = 68/810 (8%)
Query: 17 NERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLDDLLVPAFAVVRE 76
N RL+ + IN L+ +++ LSD+ L KT+EFK R+ GE+LDD+L A+AVVRE
Sbjct: 2 NNLRLKKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVRE 61
Query: 77 VARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGVHVVTVND 136
+R LGM P+DVQ+LG ++LH+G +AEMKTGEGKTL A +P+YLNAL+GKG +VT ND
Sbjct: 62 ADKRVLGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTND 121
Query: 137 YLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKR-----RAAYACDITYITNNELGFDYLR 191
YLA+RD+ M +Y++LGL+ + D D++ R Y DI Y TN+ LGFDYL
Sbjct: 122 YLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLI 181
Query: 192 DNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSIIIQLHP 251
DN+ + R N+ IVDEVDS+ +D A+TPL+ISG S+LY D+ + L
Sbjct: 182 DNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKE 241
Query: 252 S-DYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHTLF 310
DY + ++ V ++KG E+ E+ +NL YS E +V IN AL++H LF
Sbjct: 242 DVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNL------YSEEYFELVRHINLALRAHYLF 295
Query: 311 LRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNY 370
RN+DY+V EVV++D TGR++ G + G HQA+EAKE V++ E + ++SIT+QN
Sbjct: 296 KRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNL 355
Query: 371 FLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIA 430
F + KLSGMTGT +E Y+L V+++PTN P+IRID D+IY T EK A +
Sbjct: 356 FKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLE 415
Query: 431 EIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKEAYIISQAGIPGA 490
++ + H+ GQPVL+ T S+E SE + L + +LNA KEA II++AG GA
Sbjct: 416 DVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPH-NLLNAQNAAKEAQIIAEAGQKGA 474
Query: 491 VTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAGG 550
VT+AT+MAGRGTDI+LG V EL GG
Sbjct: 475 VTVATSMAGRGTDIKLGKGV-----AEL------------------------------GG 499
Query: 551 LYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRMESFLRKIGLK 610
L VI TER E+ R+D QLRGRSGRQGDPG S+F++SL+DDL++ + ++ + +K +K
Sbjct: 500 LAVIGTERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWSPSWLKKYYKKYSVK 559
Query: 611 EG----EAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQRLEIIDT 666
+ A+ K +E+AQ+ E + R+ ++++ L+ QR+ I+ +R +I+
Sbjct: 560 DSKLKPSALFKRRFRKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEG 619
Query: 667 ENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEWRND--- 723
+ L+ D + ++ K +K+ I E F +ND
Sbjct: 620 SDFLD---DDVDQIIDDVFNMYAEEQDLSNKSLLKRF---ILENLSYQF-----KNDPDE 668
Query: 724 -NGIDHTEMSKRIFAKADKIAEDQENSFGTEKMQA-LGRHILLHTLDSFWREHMARLEHS 781
+ + + + ADK +++ + + R +L +D W E + L+
Sbjct: 669 FDLKNKEAIKDFLKEIADKELSEKKKVLNNDYLFNDFERLSILKAIDENWIEQVDYLQQL 728
Query: 782 RSIIGFRGYAQRDPLQEYKSEAFGFFNTLL 811
++++ R QR+P+ EY EA + +
Sbjct: 729 KTVVTNRQNGQRNPIFEYHKEALESYEYMK 758
>gnl|CDD|183820 PRK12898, secA, preprotein translocase subunit SecA; Reviewed.
Length = 656
Score = 646 bits (1669), Expect = 0.0
Identities = 270/676 (39%), Positives = 372/676 (55%), Gaps = 79/676 (11%)
Query: 5 LAKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLD 64
L ++ +L R R + + ++ LS+++L ++ + R+ +
Sbjct: 22 LERVLGRLAGRVRGRAARRQRLLADRVLAAAEALAGLSEEALRARSLALRARLRARDGFR 81
Query: 65 DLLVP-AFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNA 123
D L+ AFA+VRE + R LG R FDVQL+GG+ L G +AEM+TGEGKTL A LP A
Sbjct: 82 DALLAEAFALVREASGRVLGQRHFDVQLMGGLALLSGRLAEMQTGEGKTLTATLPAGTAA 141
Query: 124 LSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNN 183
L+G VHV+TVNDYLA RD+ M +Y+ LGL+ G V D S D+RRAAY DITY TN
Sbjct: 142 LAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAYGADITYCTNK 201
Query: 184 ELGFDYLRDNMQYRRV-------------------DMVQRGHNFAIVDEVDSIFIDEART 224
EL FDYLRD + + ++ RG +FAIVDE DS+ IDEART
Sbjct: 202 ELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEART 261
Query: 225 PLIISGPVEDHSDL--YRTIDSIIIQLHPS-DYEIDEKQRTVHFSEKGTERIEELLHGEN 281
PLIIS P ++ + YR + QL DY ID ++ + +E G RI EL
Sbjct: 262 PLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLP 321
Query: 282 LLKSGGLYSFENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSD 341
G + E L+ AL + LF R+ YIV +VVI+DEFTGR+MP R + D
Sbjct: 322 PAWRGAVRREE------LVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWED 375
Query: 342 GQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIE 401
G HQ +EAKE ++ +TL+ IT+Q +F +Y +L+GMTGTA A EL ++Y L V+
Sbjct: 376 GLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVR 435
Query: 402 VPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRK 461
+PTN P R DE++ T+ K+AA+ A + + H +G+PVLVGT S+ SE L++ LR+
Sbjct: 436 IPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLRE 495
Query: 462 HKFTKFQILNALYHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANI 521
Q+LNA +EA I+++AG G +T+ATNMAGRGTDI+L VA R
Sbjct: 496 -AGLPHQVLNAKQDAEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAAR-------- 546
Query: 522 SDEEIRNKRIKMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRS 581
GGL+VI TERH+S RID QL GR GRQGDPG
Sbjct: 547 ---------------------------GGLHVILTERHDSARIDRQLAGRCGRQGDPGSY 579
Query: 582 KFYLSLQDDLMRIFGSP------RMESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARN 635
+ LSL+DDL++ F RME + G G ++ RAQ++ E +
Sbjct: 580 EAILSLEDDLLQSFLGSRGLAIRRMELLGPRGGRALGALLLR--------RAQRRAERLH 631
Query: 636 FETRKNLLKYDDVLNE 651
R+ LL D+ L++
Sbjct: 632 ARARRALLHADEQLDK 647
>gnl|CDD|183824 PRK12902, secA, preprotein translocase subunit SecA; Reviewed.
Length = 939
Score = 644 bits (1664), Expect = 0.0
Identities = 282/515 (54%), Positives = 359/515 (69%), Gaps = 24/515 (4%)
Query: 11 KLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGET-------L 63
LL N R+L+ Y V IN LE+EI+ LSDD L KT+EF++R++ E+ L
Sbjct: 4 LLLGDPNARKLKKYQPIVTEINLLEEEIAPLSDDELRAKTAEFRQRLDKAESDEEQREIL 63
Query: 64 DDLLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNA 123
D+LL AFAVVRE ++R LGMR FDVQL+GGM+LH+G +AEMKTGEGKTL A LP YLNA
Sbjct: 64 DELLPEAFAVVREASKRVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNA 123
Query: 124 LSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNN 183
L+GKGVHVVTVNDYLARRD+ M +++FLGLS G++ D+S ++R+ YACDITY TN+
Sbjct: 124 LTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKNYACDITYATNS 183
Query: 184 ELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTID 243
ELGFDYLRDNM ++VQR N+ ++DEVDSI IDEARTPLIISG VE + Y+
Sbjct: 184 ELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQKAA 243
Query: 244 SIIIQL-------HPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAI 296
+ L DYE+DEKQR V +++G + E+ LL L+ ++
Sbjct: 244 EVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQ------LLGVSDLFDPQD-PW 296
Query: 297 VHLINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQ 356
H I NALK+ LF+++ +YIV EVVI+DEFTGR+MPGRR+SDG HQA+EAKE V+IQ
Sbjct: 297 AHYIFNALKAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQ 356
Query: 357 PENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDE 416
PE QTL+SIT+QN+FL Y KL+GMTGTA TE E Y L+V +PTN P R D D+
Sbjct: 357 PETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVTVIPTNRPRRRQDWPDQ 416
Query: 417 IYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYH- 475
+Y+T K+ A+ E + HK+G+PVLVGT S+EKSE L S L + + +LNA
Sbjct: 417 VYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELL-SALLQEQGIPHNLLNAKPEN 475
Query: 476 -EKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGN 509
E+EA I++QAG GAVTIATNMAGRGTDI LGGN
Sbjct: 476 VEREAEIVAQAGRKGAVTIATNMAGRGTDIILGGN 510
Score = 214 bits (546), Expect = 9e-56
Identities = 108/297 (36%), Positives = 176/297 (59%), Gaps = 9/297 (3%)
Query: 529 KRIKMIQEEVQSLKEKAIV-AGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSL 587
RIK E V S + +V AGGL+VI TERHESRR+DNQLRGR+GRQGDPG ++F+LSL
Sbjct: 628 NRIKKEYEVVTSQEHDEVVEAGGLHVIGTERHESRRVDNQLRGRAGRQGDPGSTRFFLSL 687
Query: 588 QDDLMRIFGSPRMESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDD 647
+D+L+RIFG R+ + ++E I + +++E AQ+KVE ++ RK + +YD+
Sbjct: 688 EDNLLRIFGGDRVAGLMNAFRVEEDMPIESGMLTRSLEGAQKKVETYYYDIRKQVFEYDE 747
Query: 648 VLNEQRKIIFEQRLEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEI 707
V+N QR+ I+ +R +++ ++ E + T+ IVE + + PE+WD+ +L +++
Sbjct: 748 VMNNQRRAIYAERRRVLEGRDLKEQVIGYGEKTMDEIVEAYVNPDLPPEEWDLDQLVSKV 807
Query: 708 YEIFGIHFPVLEWRNDNGIDHTEMSKRIF-----AKADKIAEDQENSFGTEKMQALGRHI 762
E F L+ + + E+ + F A + E Q + M+ R
Sbjct: 808 KE-FVYLLEDLKPEDLEDLSVEEL--KAFLHEQLRIAYDLKEAQIDQIRPGLMREAERFF 864
Query: 763 LLHTLDSFWREHMARLEHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVV 819
+L +D+ WREH+ ++ R +G RGY Q+DPL EYK+E + F ++T++R++VV
Sbjct: 865 ILQQIDTLWREHLQSMDALRESVGLRGYGQKDPLIEYKNEGYEMFLEMMTNIRRNVV 921
>gnl|CDD|148880 pfam07517, SecA_DEAD, SecA DEAD-like domain. SecA protein binds to
the plasma membrane where it interacts with proOmpA to
support translocation of proOmpA through the membrane.
SecA protein achieves this translocation, in association
with SecY protein, in an ATP dependent manner. This
domain represents the N-terminal ATP-dependent helicase
domain, which is related to the pfam00270.
Length = 381
Score = 626 bits (1616), Expect = e-180
Identities = 235/382 (61%), Positives = 287/382 (75%), Gaps = 5/382 (1%)
Query: 11 KLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLDDLLVPA 70
KL NER L+ V IN LE+E LSD+ L KT E ++R+ GETLDD+L A
Sbjct: 3 KLFGSKNERDLKRLRKIVDQINALEEEYKALSDEELRAKTQELRKRLRQGETLDDILPEA 62
Query: 71 FAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGVH 130
FA+VRE A+R LGMR +DVQL+GG++LH+G +AEMKTGEGKTL A LP YLNALSGKGVH
Sbjct: 63 FALVREAAKRVLGMRHYDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVH 122
Query: 131 VVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNELGFDYL 190
VVTVNDYLA+RD+ M +Y+FLGLS GV+ D+S ++RR AY CDITY TN+ELGFDYL
Sbjct: 123 VVTVNDYLAKRDAEWMGPLYEFLGLSVGVITSDMSPEERREAYNCDITYGTNSELGFDYL 182
Query: 191 RDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSIIIQLH 250
RDNM + D VQRG NFAIVDEVDSI IDEARTPLIISGPVED S+LY D+++ +L
Sbjct: 183 RDNMALSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPVEDESELYLIADALVKKLK 242
Query: 251 PS-DYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHTL 309
DYE DEK+R V +E+G ++ EELL + L EN+ ++H +N ALK+H L
Sbjct: 243 EDEDYEDDEKRRNVLLTEEGIKKAEELLLIDLLYDEWA----ENLELLHHVNQALKAHHL 298
Query: 310 FLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQN 369
F R+ DYIV EVVI+DEFTGR+M GRR+SDG HQA+EAKE V+I PE+QTL+SIT+QN
Sbjct: 299 FERDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEITPESQTLASITYQN 358
Query: 370 YFLKYRKLSGMTGTASTEAEEL 391
+F Y KL+GMTGTA TEAEE
Sbjct: 359 FFRLYPKLAGMTGTAKTEAEEF 380
>gnl|CDD|183441 PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed.
Length = 764
Score = 568 bits (1467), Expect = e-162
Identities = 288/825 (34%), Positives = 412/825 (49%), Gaps = 121/825 (14%)
Query: 11 KLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLDDLLVPA 70
+LL E+ A V A E E+E + LSD+ L E +N + D +
Sbjct: 7 RLLGAPTEKNQSRSLALVTAAAEYEEEAADLSDEELRKAAGE----LNLDDLGDSDDLAE 62
Query: 71 F-AVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGV 129
F A+ RE A RTLG+RPFDVQLLG + L G V EM TGEGKTLA + AL G+ V
Sbjct: 63 FLAIAREAAERTLGLRPFDVQLLGALRLLAGDVIEMATGEGKTLAGAIAAAGYALQGRRV 122
Query: 130 HVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNELGFDY 189
HV+TVNDYLARRD+ M +Y+ LGL+ G + + + ++RRAAYACD+TY + NE+GFD
Sbjct: 123 HVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDV 182
Query: 190 LRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSIIIQL 249
LRD + D+V + AI+DE DS+ +DEA PL+++G + + ++ +L
Sbjct: 183 LRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAE-LVRRL 241
Query: 250 HPS-DYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVA--IVHLINNALKS 306
DYEID+ R VH ++KG ++E+ L G +L YS E+V + +N AL +
Sbjct: 242 REGKDYEIDDDGRNVHLTDKGARKVEKALGGIDL------YSEEHVGTTLTQ-VNVALHA 294
Query: 307 HTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSIT 366
H L R+ YIV +V +I+ GR+ +R+ DG A+EAKE ++ + L +IT
Sbjct: 295 HALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTIT 354
Query: 367 FQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKYA 426
Q +Y + GMTGTA E+L Y+L V +P N P IR DE D +Y T+ EK
Sbjct: 355 VQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKND 414
Query: 427 AIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKEAYIISQAG 486
AI+ I + H+ GQPVLVGT + +SE LA +LR +LNA +EA II++AG
Sbjct: 415 AIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAV-VLNAKNDAEEARIIAEAG 473
Query: 487 IPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAI 546
GAVT++T MAGRGTDI+LGG SDE R + V L
Sbjct: 474 KYGAVTVSTQMAGRGTDIRLGG-------------SDEADR--------DRVAEL----- 507
Query: 547 VAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFG-----SPRME 601
GGL+VI T RH S R+DNQLRGR+GRQGDPG S F++SL+DD++ + +
Sbjct: 508 --GGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDDVVAANLAGEKLPAQPD 565
Query: 602 SFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQRL 661
E I P ++ AQ+ E + E N +Y+ ++ +QR I
Sbjct: 566 ---------EDGRITSPKAADLVDHAQRVAEGQLLEIHANTWRYNQLIAQQRAI------ 610
Query: 662 EIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEWR 721
I + R L T+ W
Sbjct: 611 -----------IVERRERLLR----------------------TD-----------TAWE 626
Query: 722 NDNGIDHTEMSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSFWREHMARLEHS 781
E+++ + ++AE+ E ++ R I+L+ LD W +H+A L
Sbjct: 627 --------ELAELAPERYAELAEE----VDEEVLEQAARQIMLYHLDRGWADHLAYLADV 674
Query: 782 RSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIE 826
R I R +++PL E+ A F +L + E
Sbjct: 675 RESIHLRALGRQNPLDEFHRMAVDAFKSLAADAVERAQETFETAE 719
>gnl|CDD|183823 PRK12901, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1112
Score = 548 bits (1415), Expect = e-156
Identities = 275/734 (37%), Positives = 379/734 (51%), Gaps = 154/734 (20%)
Query: 256 IDEKQRTVHFSEKGTERI-------------------------------EELLHGENLLK 284
IDEK +V ++KG + I EE E L +
Sbjct: 418 IDEKNNSVELTDKGIDYITGNDEDPDFFVLPDIGTELAEIENEGGLDEEEEAEKKEELFQ 477
Query: 285 SGGLYSFENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQH 344
YS VH +N LK++TLF ++ +Y+V +V I+DE TGR+M GRRYSDG H
Sbjct: 478 D---YS-VKSERVHTLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLH 533
Query: 345 QALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPT 404
QA+EAKE VKI+ QT ++IT QNYF Y KL+GMTGTA TEA E +IY LDV+ +PT
Sbjct: 534 QAIEAKENVKIEAATQTFATITLQNYFRMYHKLAGMTGTAETEAGEFWDIYKLDVVVIPT 593
Query: 405 NVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKF 464
N P+ R D+ D +Y+T EKY A+I EI + + G+PVLVGT S+E SE L+ L+ K
Sbjct: 594 NRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKI 653
Query: 465 TKFQILNALYHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDE 524
+LNA H+KEA I+++AG PG VTIATNMAGRGTDI+L V
Sbjct: 654 -PHNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLSPEV-------------- 698
Query: 525 EIRNKRIKMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFY 584
KA AGGL +I TERHESRR+D QLRGR+GRQGDPG S+FY
Sbjct: 699 -------------------KA--AGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737
Query: 585 LSLQDDLMRIFGSPRMESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLK 644
+SL+D+LMR+FGS R+ + ++GLKEGE I H I+K+IERAQ+KVE NF RK LL+
Sbjct: 738 VSLEDNLMRLFGSERIAKVMDRMGLKEGEVIQHSMISKSIERAQKKVEENNFGIRKRLLE 797
Query: 645 YDDVLNEQRKIIFEQRLEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLE 704
YDDV+N QR++I+++R + E + IA+M +D IVE D K +
Sbjct: 798 YDDVMNSQREVIYKRRRHALMGERLGMDIANMIYDVCEAIVEN------NKVANDYKGFK 851
Query: 705 TEIYEIFGIHFPVLEWRNDNGIDHTEMSKRIF--------AKADKIA-----------ED 745
E+ + P+ E N + E++ +++ K ++IA E+
Sbjct: 852 FELIRTLAMESPITE-EEFNKLKKDELTDKLYDAALENYQRKMERIAEIAFPVIKQVYEE 910
Query: 746 QENSF---------------------------GTEKMQALGRHILLHTLDSFWREHMARL 778
Q N + G E ++ ++I LH +D W+EH+ +
Sbjct: 911 QGNMYERIVVPFTDGKRTLNVVTNLKEAYETEGKEIVKDFEKNITLHIIDEAWKEHLREM 970
Query: 779 EHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVS-----QIARIEPNNI--- 830
+ + + Y Q+DPL YK E+F F ++ + ++V+S +I E I
Sbjct: 971 DELKQSVQNASYEQKDPLLIYKFESFELFKNMVDKVNREVISFLFKGEIPVQEAPEIREA 1030
Query: 831 ------------NNQELNNSLPYIAENDHGPVIQKENELDTPNVCKTSKIKRNHPCPC-- 876
+E+ +S A + KE TP V KI RN P PC
Sbjct: 1031 APERRLDPKYRTQKEEIQDSDQRAAASRDTGAQVKE----TP-VRVEKKIGRNDPVPCQN 1085
Query: 877 ---GSGKKYKHCHG 887
GSGKKYK H
Sbjct: 1086 VDGGSGKKYKFKHA 1099
Score = 274 bits (704), Expect = 6e-74
Identities = 131/332 (39%), Positives = 162/332 (48%), Gaps = 98/332 (29%)
Query: 19 RRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNG------------------ 60
+ ++P K I E+ LS+D L KT EFK+ I
Sbjct: 18 KEIQPIVEK---IKAEYPELEALSNDELRAKTDEFKQYIKEAVADIDAKIEELKAEAIES 74
Query: 61 -------------------------ETLDDLLVPAFAVVREVARRTLG------------ 83
+ LD++L AFA+V+E ARR
Sbjct: 75 LDIDEREDIYAQIDKLEKEAYEILEKVLDEILPEAFAIVKETARRFAENEEIEVTATDFD 134
Query: 84 ---------------------------------MRPFDVQLLGGMILHKGCVAEMKTGEG 110
M +DVQL+GG++LH+G +AEM TGEG
Sbjct: 135 RELAATKDFVTIEGDKAIWKNHWDAGGNEITWDMVHYDVQLIGGVVLHQGKIAEMATGEG 194
Query: 111 KTLAAVLPVYLNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVV-FHDLSDDKR 169
KTL A LPVYLNAL+G GVHVVTVNDYLA+RDS M +Y+F GLS + H + + R
Sbjct: 195 KTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDKHQPNSEAR 254
Query: 170 RAAYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIIS 229
R AY DITY TNNE GFDYLRDNM + D+VQR HN+AIVDEVDS+ ID+ARTPLIIS
Sbjct: 255 RKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIIS 314
Query: 230 GPVEDHSDLYRTIDSIIIQLHPSDYEIDEKQR 261
GPV D +L P + E QR
Sbjct: 315 GPVPKGD------DQEFEELKPRVERLVEAQR 340
>gnl|CDD|183822 PRK12900, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1025
Score = 515 bits (1329), Expect = e-146
Identities = 267/684 (39%), Positives = 380/684 (55%), Gaps = 94/684 (13%)
Query: 254 YEIDEKQRTVHFSEKGTERIEELLH--------------------------GENLLKSGG 287
+ +DEK T+ ++KG E + +L H + + K
Sbjct: 385 FAVDEKANTIDLTDKGREFLSKLSHQDSDLFLLPDVGTEIAAIESDASLSAADKIKKKDE 444
Query: 288 LYSF--ENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQ 345
+Y E +H I+ LK+++LF R+ +Y+V +V+I+DEFTGR++PGRRYSDG HQ
Sbjct: 445 VYRLFAERSERLHNISQLLKAYSLFERDDEYVVQNGQVMIVDEFTGRILPGRRYSDGLHQ 504
Query: 346 ALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTN 405
A+EAKE VKI+ E QT+++IT QN+F Y+KL+GMTGTA TEA E IY LDV+ +PTN
Sbjct: 505 AIEAKENVKIEGETQTMATITIQNFFRLYKKLAGMTGTAETEASEFFEIYKLDVVVIPTN 564
Query: 406 VPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFT 465
P++R D D +Y+T EKY AI+ ++ + KKGQPVLVGT S+E SE L+ LR +
Sbjct: 565 KPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIA 624
Query: 466 KFQILNALYHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEE 525
+LNA H++EA I+++AG GAVTIATNMAGRGTDI+LG E
Sbjct: 625 H-NVLNAKQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLG----------------EG 667
Query: 526 IRNKRIKMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYL 585
+R GGL+++ +ERHESRRID QLRGR+GRQGDPG S FY+
Sbjct: 668 VREL-------------------GGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYV 708
Query: 586 SLQDDLMRIFGSPRMESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKY 645
SL+D+LMR+FGS R+ S + ++G +EG+ I H I K+IERAQ+KVE +NF RK LL+Y
Sbjct: 709 SLEDELMRLFGSDRVISVMDRLGHEEGDVIEHSMITKSIERAQKKVEEQNFAIRKRLLEY 768
Query: 646 DDVLNEQRKIIFEQRLEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLET 705
DDVLN+QR++I+ +R + E + I D+ D +V+K Y + D+ LE
Sbjct: 769 DDVLNQQREVIYTRRRNGLIKERLTSDIFDLLRDYCDTVVKK------YHKALDVDGLEE 822
Query: 706 EIYEIFGIHF-PVLEWRNDNGIDHTEMSKRIFAKADKIAEDQENSFGTEKMQALGRHILL 764
++ + F P + G++ + +++ A +E + + M+ + ++ +L
Sbjct: 823 QVLRELSVEFKPERDTFEREGVE--GTADKLYNTALAFYRRKEEAVPEDIMRQIEKYAVL 880
Query: 765 HTLDSFWREHMARLEHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVS---- 820
+D WREH+ ++ R I R Y Q+DPL EYK EA+ F LL + + +S
Sbjct: 881 SVIDQKWREHLREIDSLREGINLRAYGQKDPLLEYKQEAYRLFVDLLREIELETLSLAFK 940
Query: 821 -------QIARIEPNNINNQELNNSL---------PYIAENDHGPVIQKENELDTPNVCK 864
+ IE + L Y A D ENE
Sbjct: 941 LFPVTPEEAEEIEERQRKSAVRQEKLVAQHEEAESAYNASADAPETRAPENEEPKQQPVI 1000
Query: 865 T-SKIKRNHPCPCGSGKKYKHCHG 887
K RN PCPCGSGKKYK+CHG
Sbjct: 1001 AEKKPGRNDPCPCGSGKKYKNCHG 1024
Score = 254 bits (651), Expect = 6e-68
Identities = 126/301 (41%), Positives = 169/301 (56%), Gaps = 58/301 (19%)
Query: 7 KLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFK------------ 54
K+ K+ +E+ ++ + INE++ ++ LSDD+L K E K
Sbjct: 3 KIFEKIFGSKHEKDIKKIQPIIDRINEIQASLASLSDDALREKGMELKSRVRGALEPIEQ 62
Query: 55 -------------------ERINN-------------GETLDDLLVPAFAVVREVARRTL 82
E IN L+++L FA+V+E RR
Sbjct: 63 KKKDLEKKLDNPDISLEEAESINEELDTLAKEYEEATAAALEEILPETFALVKETCRRLK 122
Query: 83 G-------------MRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGV 129
G M P+DVQL+GG++LH G ++EM TGEGKTL + LP +LNAL+G+GV
Sbjct: 123 GHTYQVMGREMTWDMVPYDVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALTGRGV 182
Query: 130 HVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNELGFDY 189
HVVTVNDYLA+RD M+ +++F GLS GV+ + + ++RR Y CDITY TNNE GFDY
Sbjct: 183 HVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNTMRPEERREQYLCDITYGTNNEFGFDY 242
Query: 190 LRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDL-YRTIDSIIIQ 248
LRDNM +MVQR FAIVDEVDS+ IDEARTPLIISGPV + + ++ I I Q
Sbjct: 243 LRDNMAGTPEEMVQRDFYFAIVDEVDSVLIDEARTPLIISGPVPNADNSKFQEIKPWIEQ 302
Query: 249 L 249
L
Sbjct: 303 L 303
>gnl|CDD|183821 PRK12899, secA, preprotein translocase subunit SecA; Reviewed.
Length = 970
Score = 462 bits (1191), Expect = e-130
Identities = 225/579 (38%), Positives = 328/579 (56%), Gaps = 58/579 (10%)
Query: 298 HLINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQP 357
H + L++H L ++ DYIV D++VIIDE TGR PGRR+S+G HQA+EAKE V I+
Sbjct: 427 HGLRQLLRAHLLMEKDVDYIVRDDQIVIIDEHTGRPQPGRRFSEGLHQAIEAKEHVTIRK 486
Query: 358 ENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEI 417
E+QT +++T QN+F Y KL+GMTGTA TE+ E IYNL V++VPT P +RID +DE
Sbjct: 487 ESQTFATVTLQNFFRLYEKLAGMTGTAITESREFKEIYNLYVLQVPTFKPCLRIDHNDEF 546
Query: 418 YRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEK 477
Y T EKY AI+AEI H+KG P+L+GT S+E SE L+ LR+++ + +LNA H +
Sbjct: 547 YMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRI-EHTVLNAKNHAQ 605
Query: 478 EAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEE 537
EA II+ AG GAVT+ATNMAGRGTDI+L
Sbjct: 606 EAEIIAGAGKLGAVTVATNMAGRGTDIKL------------------------------- 634
Query: 538 VQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGS 597
E+A+ GGLYVI T RH+SRRID QLRGR R GDPG +KF+LS +D LMR+F S
Sbjct: 635 ----DEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRLMRLFAS 690
Query: 598 PRMESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIF 657
P++ + +R EGEA+ P N+ IE AQ++VE RN+ RK+ L+YDDV+N+QR+ I+
Sbjct: 691 PKLNTLIRHFRPPEGEAMSDPMFNRLIETAQKRVEGRNYTIRKHTLEYDDVMNKQRQTIY 750
Query: 658 EQRLEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPV 717
R +++ E+I + ++ + I + + + + KLE + F +
Sbjct: 751 AFRNDVLHAEDIFVVAKEIIEHVALMLASL-ILKDRHADGCSLPKLEEWLSYSFPVKLDD 809
Query: 718 LEWRNDNGIDHTEMSKRIFAKADKIAEDQENSF----------GTEKMQALG------RH 761
E R D ++++I AD + E + F E + A G R
Sbjct: 810 QELRRLGDTD--AIAEKI---ADLLIEAFQVKFSSMVAEFTEAIGEAVDAQGICNDILRS 864
Query: 762 ILLHTLDSFWREHMARLEHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQ 821
+++ +D W+ H+ ++ RS +G R Q+DPL E+K E+F F +L+ +R +V
Sbjct: 865 VMIMHIDEQWKIHLVDMDLLRSEVGLRTVGQKDPLIEFKHESFLLFESLIRDIRIAIVKH 924
Query: 822 IARIEPNNINNQELNNSLPYIAENDHGPVIQKENELDTP 860
+ R+E + +N +P +A + H EL
Sbjct: 925 LFRLELTLTRSDRPDNVIPTVATSFHNHENFGPMELTVV 963
Score = 271 bits (694), Expect = 6e-73
Identities = 123/243 (50%), Positives = 164/243 (67%), Gaps = 14/243 (5%)
Query: 11 KLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLDDLLVPA 70
+ S ER L+ + V +N +++ S LSDD L NKT+E K+R +GE+LD LL A
Sbjct: 7 RFFGSSQERILKRFQKLVEKVNAYDEKFSSLSDDELRNKTAELKQRYQDGESLDKLLPEA 66
Query: 71 FAVVREVARRTLG-------------MRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVL 117
+ VV+ V RR G M P+DVQ+LG + +HKG + EM+TGEGKTL AV+
Sbjct: 67 YGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVM 126
Query: 118 PVYLNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDI 177
P+YLNAL+GK VH+VTVNDYLA+RD + ++ ++LGL+TGV+ +KR+ Y CD+
Sbjct: 127 PLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDV 186
Query: 178 TYITNNELGFDYLRDN-MQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHS 236
Y T +E GFDYLRDN + R+ + V RG FAI+DEVDSI IDEARTPLIISGP E H+
Sbjct: 187 VYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILIDEARTPLIISGPGEKHN 246
Query: 237 DLY 239
+Y
Sbjct: 247 PVY 249
>gnl|CDD|148879 pfam07516, SecA_SW, SecA Wing and Scaffold domain. SecA protein
binds to the plasma membrane where it interacts with
proOmpA to support translocation of proOmpA through the
membrane. SecA protein achieves this translocation, in
association with SecY protein, in an ATP dependent
manner. This family is composed of two C-terminal alpha
helical subdomains: the wing and scaffold subdomains.
Length = 211
Score = 250 bits (642), Expect = 8e-67
Identities = 88/213 (41%), Positives = 135/213 (63%), Gaps = 2/213 (0%)
Query: 614 AIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQRLEIIDTENILEII 673
I + KAIE AQ+KVE RNF+ RKNLL+YDDVLN+QRK+I+ QR EI++ E++ EII
Sbjct: 1 PIESKMVTKAIENAQKKVEGRNFDIRKNLLEYDDVLNQQRKVIYAQRNEILEGEDLKEII 60
Query: 674 ADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEWRNDNGIDHTEMSK 733
+M D + +IVE+ P S PE+WD++ LE + + G+ + E G+ E+ +
Sbjct: 61 LEMIEDVIDDIVEEYAPEKS-PEEWDLEGLEEALRSLLGLDLDIDEL-ELEGLTAEELKE 118
Query: 734 RIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSFWREHMARLEHSRSIIGFRGYAQR 793
++ A + E++E G E M+ + R I+L +D W+EH+ ++H R IG RGY Q+
Sbjct: 119 KLIEAAKEAYEEKEAELGEELMREIERRIMLQVIDELWKEHLDAMDHLREGIGLRGYGQK 178
Query: 794 DPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIE 826
DPL EYK EAF F +L ++++VV + R++
Sbjct: 179 DPLVEYKREAFELFEEMLEDIKEEVVRYLFRVQ 211
>gnl|CDD|180153 PRK05590, PRK05590, hypothetical protein; Provisional.
Length = 166
Score = 56.5 bits (137), Expect = 3e-08
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 862 VCKTSKIKRNHPCPCGSGKKYKHCHG 887
V +K+ RN PCPCGSGKKYK C G
Sbjct: 139 VVNENKVGRNDPCPCGSGKKYKKCCG 164
>gnl|CDD|179309 PRK01617, PRK01617, hypothetical protein; Provisional.
Length = 154
Score = 47.0 bits (112), Expect = 2e-05
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 867 KIKRNHPCPCGSGKKYKHCHG 887
+ RN PCPCGSGKK+K C G
Sbjct: 133 QFGRNDPCPCGSGKKFKKCCG 153
Score = 31.5 bits (72), Expect = 1.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 873 PCPCGSGKKYKHCHGSYL 890
CPCGS +Y C YL
Sbjct: 4 LCPCGSALEYSLCCQPYL 21
>gnl|CDD|166842 PRK00183, PRK00183, hypothetical protein; Provisional.
Length = 157
Score = 44.8 bits (106), Expect = 1e-04
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 867 KIKRNHPCPCGSGKKYKHCHGSYL 890
K RN PCPCGSG+K+K C YL
Sbjct: 133 KAGRNDPCPCGSGQKFKKCCAPYL 156
>gnl|CDD|182427 PRK10396, PRK10396, hypothetical protein; Provisional.
Length = 221
Score = 44.4 bits (105), Expect = 1e-04
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 867 KIKRNHPCPCGSGKKYKHC 885
K+ RN PCPCGSGKK+K C
Sbjct: 200 KVGRNDPCPCGSGKKFKQC 218
>gnl|CDD|128763 smart00487, DEXDc, DEAD-like helicases superfamily.
Length = 201
Score = 44.4 bits (105), Expect = 1e-04
Identities = 36/154 (23%), Positives = 54/154 (35%), Gaps = 20/154 (12%)
Query: 85 RPFDVQLLGGMILHKG---CVAEMKTGEGKTLAAVLPVYLNALSGKGVHVV----TVNDY 137
Q L G + TG GKTLAA+LP GKG V+ T
Sbjct: 8 PLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRE-- 65
Query: 138 LARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYA---CDITYITNNELGFDYLRDNM 194
LA + + + + LGL ++ S ++ DI T L D +
Sbjct: 66 LAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLL 125
Query: 195 QYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLII 228
+ VD+V I+DE + +D +
Sbjct: 126 ELSNVDLV-------ILDEAHRL-LDGGFGDQLE 151
>gnl|CDD|179332 PRK01752, PRK01752, hypothetical protein; Provisional.
Length = 156
Score = 44.0 bits (104), Expect = 2e-04
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 872 HPCPCGSGKKYKHCHGSYL 890
PC CGSGKK+KHC G YL
Sbjct: 138 QPCVCGSGKKFKHCCGGYL 156
Score = 29.8 bits (67), Expect = 3.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 873 PCPCGSGKKYKHCHGSY 889
CPC SGK Y C G +
Sbjct: 7 ACPCQSGKHYADCCGPF 23
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 43.7 bits (103), Expect = 2e-04
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 868 IKRNHPCPCGSGKKYKHCH 886
+KRN PC CGSGKK+KHCH
Sbjct: 1 MKRNDPCWCGSGKKWKHCH 19
>gnl|CDD|179393 PRK02250, PRK02250, hypothetical protein; Provisional.
Length = 166
Score = 41.8 bits (98), Expect = 7e-04
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 867 KIKRNHPCPCGSGKKYKHCHG 887
K RN PC CGSGKK+K C G
Sbjct: 146 KQGRNDPCICGSGKKFKKCCG 166
>gnl|CDD|152573 pfam12138, Spherulin4, Spherulation-specific family 4. This
protein is found in bacteria, archaea and eukaryotes.
Proteins in this family are typically between 250 and
398 amino acids in length. There is a conserved NPG
sequence motif and there are two completely conserved G
residues that may be functionally important. Starvation
will often induce spherulation - the production of
spores - and this process may involve DNA-methylation.
Changes in the methylation of spherulin4 are associated
with the formation of spherules, but these changes are
probably transient. Methylation of the gene accompanies
its transcriptional activation, and spherulin4 mRNA is
only detectable in late spherulating cultures and mature
spherules. It is a spherulation-specific protein.
Length = 243
Score = 30.8 bits (70), Expect = 1.7
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 214 VDSIFIDEARTPLIISGPVEDHSDLYRTIDSIIIQLHPSDY 254
VD IF+DE S + + YR I S I L
Sbjct: 104 VDGIFLDET-----PSDYNASYLEYYRNITSYIKGLGGDGL 139
>gnl|CDD|182976 PRK11119, proX, glycine betaine transporter periplasmic subunit;
Provisional.
Length = 331
Score = 29.9 bits (68), Expect = 2.7
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 424 KYAAIIAEIIDSHKKGQPVL 443
YAA++A+ I +K+G+PVL
Sbjct: 186 NYAALMADTIARYKEGKPVL 205
>gnl|CDD|151095 pfam10552, ORF6C, ORF6C domain. This domain was identified by Iyer
and colleagues.
Length = 114
Score = 29.9 bits (68), Expect = 3.1
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 528 NKRIKMIQEEVQSLKEKAIVAGGLY-VISTERHESRRIDNQLRGRSGRQGDPGRSKFYLS 586
++I+ I+E+V L+E + G I + ++R+ L G+ R K +
Sbjct: 14 KEKIEEIEEKVDDLEENMPLFAGEAKEIQ--KKVNKRVVELLGGKGSPAYKNLRKKVFRD 71
Query: 587 LQDDLMRIFGSPRMESFLRK 606
+ L R FG ++ RK
Sbjct: 72 IYRQLKREFGVSSYKAIPRK 91
>gnl|CDD|179710 PRK04016, PRK04016, DNA-directed RNA polymerase subunit N;
Provisional.
Length = 62
Score = 29.9 bits (68), Expect = 3.3
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 46 LANKTSEFKERINNGE----TLDDLLVPAFAVVREVARRTL 82
+A K EFKER+ GE LDDL V R RR L
Sbjct: 14 IAEKWEEFKERVEAGEDPGKVLDDL-----GVKRYCCRRML 49
>gnl|CDD|181498 PRK08601, PRK08601, NADH dehydrogenase subunit 5; Validated.
Length = 509
Score = 29.6 bits (67), Expect = 3.5
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 287 GLYSFENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVI 325
G YS AI+HLI + L TLFL++ V R +V
Sbjct: 312 GAYS---AAIIHLILHGLFKATLFLQS-GSAVPRFNIVK 346
>gnl|CDD|131431 TIGR02378, nirD_assim_sml, nitrite reductase [NAD(P)H], small
subunit. This model describes NirD, the small subunit
of nitrite reductase [NAD(P)H] (the assimilatory nitrite
reductase), which associates with NirB, the large
subunit (TIGR02374). In a few bacteria such as
Klebsiella pneumoniae and in Fungi, the two regions are
fused.
Length = 105
Score = 29.6 bits (67), Expect = 3.8
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 397 LDVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPV---LVGTPSIEKSE 453
+D I T V V+ D I+R ++ AI + + HK+ + +VG +
Sbjct: 8 IDDIPEETGVCVLLGDTQIAIFRVPGDQVFAI--QNMCPHKRAFVLSRGIVGD--AQGEL 63
Query: 454 YLASQLRKHKFT 465
++A L K F
Sbjct: 64 WVACPLHKRNFR 75
>gnl|CDD|163096 TIGR02987, met_A_Alw26, type II restriction m6 adenine DNA
methyltransferase, Alw26I/Eco31I/Esp3I family. Members
of this family are the m6-adenine DNA methyltransferase
protein, or domain of a fusion protein that also carries
m5 cytosine methyltransferase activity, of type II
restriction systems of the Alw26I/Eco31I/Esp3I family. A
methyltransferase of this family is alway accompanied by
a type II restriction endonuclease from the
Alw26I/Eco31I/Esp3I family (TIGR02986) and by an
adenine-specific modification methyltransferase. Members
of this family are unusual in that regions of similarity
to homologs outside this family are circularly permuted.
Length = 524
Score = 29.4 bits (66), Expect = 4.8
Identities = 11/54 (20%), Positives = 19/54 (35%)
Query: 620 INKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQRLEIIDTENILEII 673
+ + +R + KY V E ++ E LEI + + II
Sbjct: 142 KYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNGYVSII 195
>gnl|CDD|183571 PRK12522, PRK12522, RNA polymerase sigma factor; Provisional.
Length = 173
Score = 28.7 bits (64), Expect = 7.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 515 EHELANISDEEIRNKRIKMIQEEVQSLKEK 544
+ NIS+E I+ +MI+E +Q L EK
Sbjct: 94 FADDVNISEEFIQKVEAEMIREVIQLLNEK 123
>gnl|CDD|181881 PRK09466, metL, bifunctional aspartate kinase II/homoserine
dehydrogenase II; Provisional.
Length = 810
Score = 28.4 bits (64), Expect = 7.8
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 16/56 (28%)
Query: 199 VDMVQRGHNFAIVDEVDSIFIDEAR----TPLIISGP----------VEDHSDLYR 240
V+ V+ H A + D++F E+R PL+I GP + SDL R
Sbjct: 752 VEAVRPDHPLANLLPCDNVFAIESRWYRDNPLVIRGPGAGREVTAGAI--QSDLNR 805
>gnl|CDD|181513 PRK08638, PRK08638, threonine dehydratase; Validated.
Length = 333
Score = 28.5 bits (64), Expect = 8.2
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 501 GTDIQLGGNVAMRIEHELAN----ISDEEIRNKRIKMIQEEVQSLKEKAIVAGGLYVIST 556
G D+ GN+ I EL + +S++EIRN +IQ +V G ++T
Sbjct: 237 GCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQ-------RNKVVTEGAGALAT 289
Query: 557 ERHESRRIDNQLRGR 571
S ++D ++ +
Sbjct: 290 AALLSGKLDQYIQNK 304
>gnl|CDD|102361 PRK06404, PRK06404, anthranilate synthase component I; Reviewed.
Length = 351
Score = 28.3 bits (63), Expect = 8.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 36 KEISHLSDDSLANKTSEFKERINNGETL 63
K + +D SL+ K E E I GE L
Sbjct: 97 KLKGNYNDISLSLKIKELIELIRAGEVL 124
>gnl|CDD|178488 PLN02900, PLN02900, alanyl-tRNA synthetase.
Length = 936
Score = 28.4 bits (64), Expect = 8.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 88 DVQLLGGMILHKGCVAEMKTGEGKTLAA 115
DVQ GG +LH G V E G +
Sbjct: 557 DVQKAGGFVLHIGTVTEGSVSVGDAVTC 584
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.136 0.387
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 14,923,244
Number of extensions: 1030535
Number of successful extensions: 2445
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2355
Number of HSP's successfully gapped: 83
Length of query: 890
Length of database: 5,994,473
Length adjustment: 102
Effective length of query: 788
Effective length of database: 3,790,457
Effective search space: 2986880116
Effective search space used: 2986880116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.7 bits)