RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter asiaticus str. psy62] (890 letters) >gnl|CDD|183826 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed. Length = 830 Score = 1439 bits (3728), Expect = 0.0 Identities = 490/884 (55%), Positives = 615/884 (69%), Gaps = 58/884 (6%) Query: 5 LAKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLD 64 + L K+ N+R L+ V IN LE E+ LSD+ L KT+EFKER+ GETLD Sbjct: 1 MLGLLKKIFGSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLD 60 Query: 65 DLLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNAL 124 DLL AFAVVRE ++R LGMR FDVQL+GGM+LH+G +AEMKTGEGKTL A LP YLNAL Sbjct: 61 DLLPEAFAVVREASKRVLGMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNAL 120 Query: 125 SGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNE 184 +GKGVHVVTVNDYLA+RD+ M +Y+FLGLS GV+ +S ++RR AYA DITY TNNE Sbjct: 121 TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYAADITYGTNNE 180 Query: 185 LGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDS 244 GFDYLRDNM + + VQRG N+AIVDEVDSI IDEARTPLIISGP ED S+LY+ + Sbjct: 181 FGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANK 240 Query: 245 IIIQLH-PSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNA 303 I+ L DY +DEK RTV +E+G E+ E+LL EN LY EN+A+VH +N A Sbjct: 241 IVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIEN------LYDPENIALVHHLNQA 294 Query: 304 LKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLS 363 L++H LF R+ DYIV EVVI+DEFTGR+MPGRRYSDG HQA+EAKE VKIQ ENQTL+ Sbjct: 295 LRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLA 354 Query: 364 SITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEE 423 SITFQNYF Y KL+GMTGTA TEAEE IYNLDV+ +PTN P+IRID D IY+T +E Sbjct: 355 SITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKE 414 Query: 424 KYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKEAYIIS 483 K+ A++ +I + HKKGQPVLVGT SIEKSE L+ L+K +LNA HE+EA II+ Sbjct: 415 KFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGI-PHNVLNAKNHEREAEIIA 473 Query: 484 QAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKE 543 QAG PGAVTIATNMAGRGTDI+LGGN M L EE ++I I+ E Q E Sbjct: 474 QAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALL-----EEETEEQIAKIKAEWQEEHE 528 Query: 544 KAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRMESF 603 + + AGGL+VI TERHESRRIDNQLRGRSGRQGDPG S+FYLSL+DDLMRIFGS R++ Sbjct: 529 EVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGM 588 Query: 604 LRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQRLEI 663 + ++G+KEGEAI H + +AIE AQ+KVE RNF+ RK LL+YDDV+N+QRK+I+ QR EI Sbjct: 589 MDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQRKVIYAQRNEI 648 Query: 664 IDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEWRND 723 ++ E++ E I DMR D + ++V+ IP SY E WD++ LE + FG+ P+ EW + Sbjct: 649 LEGEDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEALKTDFGLELPIEEWLEE 708 Query: 724 NGIDHTEMSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSFWREHMARLEHSRS 783 G+D E+ +RI A++ E++E G E+M+ R ++L LD+ WREH+A ++H R Sbjct: 709 -GLDEEELRERILEAAEEAYEEKEEELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQ 767 Query: 784 IIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIEPNNINNQELNNSLPYIA 843 IG RGYAQ+DPLQEYK E F F +L ++++VV + +++ + Sbjct: 768 GIGLRGYAQKDPLQEYKREGFELFEEMLDSIKEEVVRTLMKVQID--------------- 812 Query: 844 ENDHGPVIQKENELDTPNVCKTSKIKRNHPCPCGSGKKYKHCHG 887 PCPCGSGKKYKHCHG Sbjct: 813 -----------------------------PCPCGSGKKYKHCHG 827 >gnl|CDD|162135 TIGR00963, secA, preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. Length = 745 Score = 1048 bits (2711), Expect = 0.0 Identities = 411/789 (52%), Positives = 538/789 (68%), Gaps = 49/789 (6%) Query: 31 INELEKEISHLSDDSLANKTSEFKERIN-NGETLDDLLVPAFAVVREVARRTLGMRPFDV 89 IN LE++ LSD+ L KT+EFK+R+ GETLDDLL AFAVVRE ++R LGMRPFDV Sbjct: 1 INALEEDYEKLSDEELRAKTNEFKDRLQKQGETLDDLLPEAFAVVREASKRVLGMRPFDV 60 Query: 90 QLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGVHVVTVNDYLARRDSNTMSAI 149 QL+GG+ LHKG +AEMKTGEGKTL A LP YLNAL+GKGVHVVTVNDYLA+RD+ M + Sbjct: 61 QLIGGIALHKGKIAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQV 120 Query: 150 YKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFA 209 Y+FLGLS G++ +S ++RR AYACDITY TNNELGFDYLRDNM + + + VQR +FA Sbjct: 121 YRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFA 180 Query: 210 IVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSIIIQLHPS-DYEIDEKQRTVHFSEK 268 I+DEVDSI IDEARTPLIISGP E ++LY + L YE+DEK R V +EK Sbjct: 181 IIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEK 240 Query: 269 GTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVIIDE 328 G ++ E+LL +N LY EN ++H INNALK+ LF ++ DYIV EVVI+DE Sbjct: 241 GIKKAEDLLGVDN------LYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDE 294 Query: 329 FTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEA 388 FTGR+M GRR+SDG HQA+EAKE V+IQ ENQTL++IT+QN+F Y KLSGMTGTA TE Sbjct: 295 FTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEE 354 Query: 389 EELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPS 448 EE IYNL+V+ VPTN PVIR D D +Y+T EEK+ A++ EI + H KGQPVLVGT S Sbjct: 355 EEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTS 414 Query: 449 IEKSEYLASQLRKHKFTKFQILNALYHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGG 508 +EKSE L++ L++ +LNA HE+EA II+QAG GAVTIATNMAGRGTDI+L Sbjct: 415 VEKSELLSNLLKERGI-PHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKL-- 471 Query: 509 NVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQL 568 E+ GGLYVI TERHESRRIDNQL Sbjct: 472 ----------------------------------EEVKELGGLYVIGTERHESRRIDNQL 497 Query: 569 RGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRMESFLRKIGLKEGEAIIHPWINKAIERAQ 628 RGRSGRQGDPG S+F+LSL+D+LMRIFG R+E +R++GL++ E I + +A+E AQ Sbjct: 498 RGRSGRQGDPGSSRFFLSLEDNLMRIFGGDRLEGLMRRLGLEDDEPIESKMVTRALESAQ 557 Query: 629 QKVEARNFETRKNLLKYDDVLNEQRKIIFEQRLEIIDTENILEIIADMRHDTLHNIVEKC 688 ++VEARNF+ RK LL+YDDVLN+QR++I+ +R I+++E++ E+I M TL IV+ Sbjct: 558 KRVEARNFDIRKQLLEYDDVLNKQREVIYAERRRILESEDLSELILQMLESTLDEIVDAY 617 Query: 689 IPNNSYPEKWDIKKLETEIYEIFGIHFPVLEWRNDNGIDHTEMSKRIFAKADKIAEDQEN 748 I E+WD++ L ++ +F + L + + ++ + + K +++E Sbjct: 618 INEQKPSEEWDLEGLIEKLKTLF-LLDGDLTPEDLENLTSEDLKELLLEKIRAAYDEKEA 676 Query: 749 SFGTEK---MQALGRHILLHTLDSFWREHMARLEHSRSIIGFRGYAQRDPLQEYKSEAFG 805 +E+ M+ R++LL ++D W+EH+ ++ R IG R Y Q+DPL EYK+E F Sbjct: 677 ELESERPGLMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFN 736 Query: 806 FFNTLLTHL 814 F +L + Sbjct: 737 LFLEMLEDI 745 >gnl|CDD|183827 PRK12906, secA, preprotein translocase subunit SecA; Reviewed. Length = 796 Score = 970 bits (2509), Expect = 0.0 Identities = 392/831 (47%), Positives = 531/831 (63%), Gaps = 60/831 (7%) Query: 11 KLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLDDLLVPA 70 K +++R L+ +N LE E LSD+ L KT EF++RI +GE+LDDLL A Sbjct: 6 KKWFDNDKRELKRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDRIKDGESLDDLLPEA 65 Query: 71 FAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGVH 130 FAV RE A+R LG+RPFDVQ++GG++LH+G +AEMKTGEGKTL A LPVYLNAL+GKGVH Sbjct: 66 FAVAREGAKRVLGLRPFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVH 125 Query: 131 VVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNELGFDYL 190 VVTVN+YL+ RD+ M +Y++LGL+ G+ + +S D++RAAY CDITY TN+ELGFDYL Sbjct: 126 VVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYL 185 Query: 191 RDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSIIIQLH 250 RDNM + MVQR N+AIVDEVDSI IDEARTPLIISG E +DLY D + L Sbjct: 186 RDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLI 245 Query: 251 ------------PSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVH 298 DY+IDEK +T+ +E+G + E+L +N LY EN A+ H Sbjct: 246 KDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDN------LYDSENTALAH 299 Query: 299 LINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPE 358 I+ AL+++ + L++ DY+V EV+I+DEFTGR+M GRRYSDG HQA+EAKE VKIQ E Sbjct: 300 HIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEE 359 Query: 359 NQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIY 418 NQTL++IT+QN+F Y+KLSGMTGTA TE EE IYN++VI +PTN PVIR D D +Y Sbjct: 360 NQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLY 419 Query: 419 RTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKE 478 T + K+ A++ EI + H KGQPVLVGT +IE SE L+ L + +LNA H KE Sbjct: 420 PTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGI-PHAVLNAKNHAKE 478 Query: 479 AYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEV 538 A II AG GAVTIATNMAGRGTDI+LG V EL Sbjct: 479 AEIIMNAGQRGAVTIATNMAGRGTDIKLGPGVK-----EL-------------------- 513 Query: 539 QSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSP 598 GGL VI TERHESRRIDNQLRGRSGRQGDPG S+FYLSL+DDLMR FGS Sbjct: 514 ----------GGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFGSD 563 Query: 599 RMESFLRKIGL-KEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIF 657 R+++FL ++G+ + + I I + +E AQ++VE N++TRK LL+YDDV+ EQR++I+ Sbjct: 564 RVKAFLDRLGMNDDDQVIESRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIY 623 Query: 658 EQRLEIID-TENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFP 716 +QR+++I+ +++ E++ M T+ V+ + + WD+ L I Sbjct: 624 KQRMQVINEDKDLKEVLMPMIKRTVDRQVQMYTQGD--KKDWDLDALRDFIVSAM-PDEE 680 Query: 717 VLEWRNDNGIDHTEMSKRIFAKADKIAEDQENSFGTE-KMQALGRHILLHTLDSFWREHM 775 ++ + G E+ KR+ + ++E G +M + ++L +DS W +H+ Sbjct: 681 TFDFEDLKGKSPEELKKRLLDIVEDNYAEKEKQLGDPTQMLEFEKVVILRVVDSHWTDHI 740 Query: 776 ARLEHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIE 826 ++ R IG RGY Q +PL EY+ E + F +++++ DV + + Sbjct: 741 DAMDQLRQSIGLRGYGQLNPLVEYQEEGYRMFEEMISNIDYDVTRLFMKAQ 791 >gnl|CDD|183863 PRK13107, PRK13107, preprotein translocase subunit SecA; Reviewed. Length = 908 Score = 926 bits (2394), Expect = 0.0 Identities = 445/911 (48%), Positives = 610/911 (66%), Gaps = 35/911 (3%) Query: 5 LAKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLD 64 KL +K+ N+R L+ VI IN LE + L+D+ L KT+EF+ER+ GETLD Sbjct: 2 FGKLLTKVFGSRNDRTLKGLGKVVIKINALEADYEKLTDEELKAKTAEFRERLAAGETLD 61 Query: 65 DLLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNAL 124 D++ AFA VRE ++R MR FDVQLLGGM+L +AEM+TGEGKTL A LP YLNAL Sbjct: 62 DIMAEAFATVREASKRVFEMRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNAL 121 Query: 125 SGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNE 184 +GKGVHV+TVNDYLARRD+ +++FLGL+ G+ L +++AAY DITY TNNE Sbjct: 122 TGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAAYNADITYGTNNE 181 Query: 185 LGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDS 244 GFDYLRDNM + + VQR ++A++DEVDSI IDEARTPLIISG ED S+LY I++ Sbjct: 182 FGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKINT 241 Query: 245 IIIQLHPS------------DYEIDEKQRTVHFSEKGTERIEELLHGENLLKSG-GLYSF 291 +I L DY IDEK + VHF+E+G E++E LL +L G LYS Sbjct: 242 LIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSA 301 Query: 292 ENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKE 351 N++++H +N AL++HTLF ++ DYIV +EV+I+DE TGR MPGRR+S+G HQA+EAKE Sbjct: 302 ANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKE 361 Query: 352 RVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRI 411 V IQ ENQTL+SITFQNYF +Y KL+GMTGTA TEA E +IY LD + VPTN P++R Sbjct: 362 GVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRK 421 Query: 412 DEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILN 471 D D +Y T++EKY AII +I D ++GQPVLVGT SIE+SE LA + K K ++LN Sbjct: 422 DMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPH-EVLN 480 Query: 472 ALYHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRI 531 A +HE+EA I++QAG GAVTIATNMAGRGTDI LGGN M IE L N + E+ Sbjct: 481 AKFHEREAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEIE-ALENPTAEQKAK--- 536 Query: 532 KMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDL 591 I+ + Q ++ + AGGL+++ TERHESRRIDNQLRGR+GRQGD G S+FYLS++D L Sbjct: 537 --IKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSL 594 Query: 592 MRIFGSPRMESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNE 651 MRIF S R+ ++K+G++EGEAI HPW+++AIE AQ+KVEARNF+ RK LL++DDV N+ Sbjct: 595 MRIFASDRVSGMMKKLGMEEGEAIEHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVAND 654 Query: 652 QRKIIFEQRLEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIF 711 QR++++ QR E++D E+I + I +++ D ++ ++++ IP S E WD+ LE +++ F Sbjct: 655 QRQVVYAQRNELMDAESIEDTIKNIQDDVINGVIDQYIPPQSVEELWDVPGLEQRLHQEF 714 Query: 712 GIHFPVLEWRNDNGIDHTE-MSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSF 770 + P+ EW + H E + +RI + +E G + ++ + ++L TLD Sbjct: 715 MLKLPIQEWLDKEDDLHEETLRERIVTSWSDAYKAKEEMVGAQVLRQFEKAVMLQTLDGL 774 Query: 771 WREHMARLEHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIEPNNI 830 W+EH+A ++H R I RGYAQ++P QEYK E+F F LL L+ DV+S +++++ Sbjct: 775 WKEHLAAMDHLRQGIHLRGYAQKNPKQEYKRESFELFQQLLETLKHDVISVLSKVQVQAQ 834 Query: 831 NN----------QELNNSLPYIAENDHGPVIQKENELD----TPNVCKTSKIKRNHPCPC 876 ++ ++ Y V ++ TP + K+ RN PCPC Sbjct: 835 SDVEEMEARRREEDAKIQRDYQHAAAEALVGGEDESAALAAHTPMIRDGEKVGRNDPCPC 894 Query: 877 GSGKKYKHCHG 887 GSG+KYK CHG Sbjct: 895 GSGRKYKQCHG 905 >gnl|CDD|183859 PRK13103, secA, preprotein translocase subunit SecA; Reviewed. Length = 913 Score = 911 bits (2356), Expect = 0.0 Identities = 446/916 (48%), Positives = 596/916 (65%), Gaps = 40/916 (4%) Query: 5 LAKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLD 64 A L KL NER ++ V +N E+++ LSD+ L KT+EFK R+ GETLD Sbjct: 2 FAPLLKKLFGSKNEREVKRMLKTVQIVNAFEEQMVALSDEQLRAKTAEFKARLAKGETLD 61 Query: 65 DLLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNAL 124 LL AFAV RE +R +GMR FDVQL+GGM LH+G +AEM+TGEGKTL L VYLNAL Sbjct: 62 QLLPEAFAVAREAGKRVMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNAL 121 Query: 125 SGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNE 184 SGKGVHVVTVNDYLARRD+N M +Y+FLGLS G+V +++RAAYA DITY TNNE Sbjct: 122 SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYAADITYGTNNE 181 Query: 185 LGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDS 244 GFDYLRDNM + D QR NFA++DEVDSI IDEARTPLIISG ED S LY I+ Sbjct: 182 FGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINR 241 Query: 245 IIIQL------------HPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSG-GLYSF 291 +I +L + IDEK R V +E G + IEE+L LL G LYS Sbjct: 242 LIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSA 301 Query: 292 ENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKE 351 N+ ++ + L++H LF RN +YIV +V++IDE TGR MPGRR S+G HQA+EAKE Sbjct: 302 HNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKE 361 Query: 352 RVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRI 411 + IQ E+QTL+S TFQNYF Y KLSGMTGTA TEA E IY LDV+ +P N P+ R Sbjct: 362 NLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARK 421 Query: 412 DEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILN 471 D +D +Y T+EEKYAAII +I + G+PVLVGT +IE SE++++ L+K + ++LN Sbjct: 422 DFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGI-EHKVLN 480 Query: 472 ALYHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRI 531 A YHEKEA II+QAG PGA+TIATNMAGRGTDI LGGN + + L N + E+ I Sbjct: 481 AKYHEKEAEIIAQAGRPGALTIATNMAGRGTDILLGGNWEVEVA-ALENPTPEQ-----I 534 Query: 532 KMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDL 591 I+ + Q ++ I AGGL+VI++ERHESRRIDNQLRGR+GRQGDPG S+FYLSL+D L Sbjct: 535 AQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSL 594 Query: 592 MRIFGSPRMESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNE 651 MRIF S R+++F++ +G++ GEAI H + AIE+AQ+KVE RNF+ RK LL++DDV NE Sbjct: 595 MRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEGRNFDIRKQLLEFDDVANE 654 Query: 652 QRKIIFEQRLEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIF 711 QRK+I+ R ++ ENI E IA+ R + L+ + + IP S PE+WD+ LE + F Sbjct: 655 QRKVIYHMRNSLLAAENIGETIAEFREEVLNATISQHIPPQSLPEQWDVAGLEAALASDF 714 Query: 712 GIHFPVLEWRNDNGIDHTE-MSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSF 770 + P+ +W +++ + E + ++I + ++E+ G E ++ + ILL LD Sbjct: 715 AVKLPIQQWLDEDDHLYEETLREKILEELLAAYNEKEDQAGAEALRTFEKQILLRVLDDL 774 Query: 771 WREHMARLEHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIEPNNI 830 W++H++ ++H R I RGYAQ++P QEYK E+F F LL +++D + ++ ++ Sbjct: 775 WKDHLSTMDHLRHGIHLRGYAQKNPKQEYKRESFTLFQELLDSIKRDTIRVLSHVQVRRE 834 Query: 831 NNQELNNSLPYIAE---------NDHGPVIQKENELD----------TPNVCKTSKIKRN 871 + E L AE + P +++ + + V K+ RN Sbjct: 835 DPAEEEARLRREAEELASRMQFQHAEAPGLEQPQLGEEEEEPAVAVASAPVRNEQKLGRN 894 Query: 872 HPCPCGSGKKYKHCHG 887 PC CGSGKK+KHCHG Sbjct: 895 EPCWCGSGKKFKHCHG 910 >gnl|CDD|183860 PRK13104, secA, preprotein translocase subunit SecA; Reviewed. Length = 896 Score = 880 bits (2274), Expect = 0.0 Identities = 459/899 (51%), Positives = 610/899 (67%), Gaps = 21/899 (2%) Query: 5 LAKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLD 64 L+ L K+ NER LR V+AIN E ++ LS++ LA KT EFKER NNGE+LD Sbjct: 2 LSTLIKKMFGSRNERTLRRMEKSVMAINAFEPKMQALSNEELAGKTQEFKERFNNGESLD 61 Query: 65 DLLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNAL 124 +LL AFA VREV+ RTLG+R FDVQL+GGM+LH+G +AEM+TGEGKTL A LP YLNA+ Sbjct: 62 ELLAEAFATVREVSLRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAI 121 Query: 125 SGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNE 184 SG+GVH+VTVNDYLA+RDS M IY+FLGL+ GV++ D+S +++ AY DI Y TNNE Sbjct: 122 SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAYKADIVYGTNNE 181 Query: 185 LGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDS 244 GFDYLRDNM + D VQR NFAIVDEVDSI IDEARTPLIISG ED S+LY I+S Sbjct: 182 YGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINS 241 Query: 245 IIIQLHPS-------DYEIDEKQRTVHFSEKGTERIEELLHGENLLKSG-GLYSFENVAI 296 +I QL DY IDEKQ+ H ++ G IEELL LL G LY N+ + Sbjct: 242 LIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIML 301 Query: 297 VHLINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQ 356 +H +N ALK+H +F R+ DYIV ++VVI+DE TGR MPGRR+S+G HQA+EAKE V IQ Sbjct: 302 MHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQ 361 Query: 357 PENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDE 416 ENQTL+SITFQN+F Y KLSGMTGTA TEA E IYNL+V+ +PTN +IR DE D Sbjct: 362 NENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADL 421 Query: 417 IYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHE 476 +Y T +K+ AII ++ + + QPVLVGT SIE SE+L SQL K + K Q+LNA +HE Sbjct: 422 VYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFL-SQLLKKENIKHQVLNAKFHE 480 Query: 477 KEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQE 536 KEA II++AG PGAVTIATNMAGRGTDI LGG++A + + A+ S++E + +++ Sbjct: 481 KEAQIIAEAGRPGAVTIATNMAGRGTDIVLGGSLAADLANLPADASEQE-----KEAVKK 535 Query: 537 EVQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFG 596 E Q ++ I AGGL +I +ERHESRRIDNQLRGR+GRQGDPG S+FYLSL+D+LMRIF Sbjct: 536 EWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFA 595 Query: 597 SPRMESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKII 656 S R+ S +R++G++ GE I H + +AIE AQ+K+E +F+ RK LL YD+V N+QR++I Sbjct: 596 SERVASMMRRLGMQPGEPIEHSLVTRAIENAQRKLEGHHFDVRKQLLDYDNVANDQRQVI 655 Query: 657 FEQRLEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFP 716 + QR I+ + E++ MR + + ++V+ IP S ++WD + L + + F I P Sbjct: 656 YTQRASIMAMTDTQEVVEMMREEVMDSLVDTYIPPQSLEDQWDPQALSDVLSDEFKIKAP 715 Query: 717 VLEW-RNDNGIDHTEMSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSFWREHM 775 V +W D+ I ++ ++I A A + +++ G + + I+L TLD+ WREH+ Sbjct: 716 VPDWIDKDHSIQPEQIKEKILALAIEHYDEKVRKVGRPVISQFEKSIILQTLDNHWREHL 775 Query: 776 ARLEHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIE---PNNINN 832 A ++ R I RGYAQ+DP QEYK EAF F +L +L+ +V+ ++ +E + Sbjct: 776 AAMDQLRQGIHLRGYAQKDPKQEYKKEAFSLFTMMLDNLKYEVIRILSSVEIQTEEDAQV 835 Query: 833 QELNNSLPYIAEND--HGPVIQKENELDTPNVCK-TSKIKRNHPCPCGSGKKYKHCHGS 888 E I + + H + + + +T + KI RN PCPCGSGKKYK CHGS Sbjct: 836 VEEQRRADQIRKMNLMHESLSENDEASETQTFRRQEKKIGRNDPCPCGSGKKYKACHGS 894 >gnl|CDD|181694 PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed. Length = 790 Score = 857 bits (2217), Expect = 0.0 Identities = 353/832 (42%), Positives = 515/832 (61%), Gaps = 61/832 (7%) Query: 8 LASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLDDLL 67 + KLL ++RRL+ Y V IN+LE ++S LSD+ L KT EFKER+ +G+TLDD+L Sbjct: 1 MKKKLLGDIDKRRLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDIL 60 Query: 68 VPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGK 127 AFAVVRE A+R LGMRP+DVQL+G ++LH+G +AEM+TGEGKTL A +P+YLNAL GK Sbjct: 61 PEAFAVVREAAKRVLGMRPYDVQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGK 120 Query: 128 GVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSD-DKRRAAYACDITYITNNELG 186 GVH++TVNDYLA+RD+ M +Y+FLGL+ G+ F D+ D +++A Y DI Y TN+ELG Sbjct: 121 GVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELG 180 Query: 187 FDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSII 246 FDYLRDN+ + D VQR N+AI+DE+DSI +DEA+TPLIISG S+LY + Sbjct: 181 FDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFV 240 Query: 247 IQLHPS-DYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALK 305 L DYE DE+++ V +++G E+ E +NL YS E+ + I AL+ Sbjct: 241 KTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNL------YSLEHQVLYRHIILALR 294 Query: 306 SHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSI 365 +H LF R+ DYIV E+V++D FTGR++PGR+ DG HQA+EAKE V+I EN+T++SI Sbjct: 295 AHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASI 354 Query: 366 TFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKY 425 T QN F + KLSGMTGTA TE +E +YN++V+++PTN P+IRID D+++ T +EKY Sbjct: 355 TIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKY 414 Query: 426 AAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKEAYIISQA 485 A+I E+ + H+ G+PVL+GT SIE+SE + L + +LNA KEA II++A Sbjct: 415 KAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIP-HNLLNAKNAAKEAQIIAEA 473 Query: 486 GIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKA 545 G GAVT+ATNMAGRGTDI+LG V HEL Sbjct: 474 GQKGAVTVATNMAGRGTDIKLGEGV-----HEL--------------------------- 501 Query: 546 IVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRMESFLR 605 GGL VI TER ESRR+D QLRGRSGRQGDPG S+F++SL+DDL++ F +E + Sbjct: 502 ---GGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEELEKLKK 558 Query: 606 KIGLKE---GEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQRLE 662 K+ + + ++K + +AQ+ E + R+ L+ DDV+N QR +++++R Sbjct: 559 KLKTDAQRLTGLLFNRKVHKIVVKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNR 618 Query: 663 IIDTE--NILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEW 720 +++ + ++++I+ M L + E+ + S E+W + L ++ EI Sbjct: 619 LLEEDDRDLIDIVILMIDVYLEAVAEEYLLEKSLLEEWIYENLSFQLNEILS-------- 670 Query: 721 RNDNGIDHTEMSKRIFAKADKIAEDQENSFG-TEKMQALGRHILLHTLDSFWREHMARLE 779 N N D E+ + + +A+K +++ N R + L +D W E + L+ Sbjct: 671 -NTNFPDKKEVVQFLLEEAEKQLKEKRNKLPSATLYNQFLRKVALKAIDQNWVEQVDALQ 729 Query: 780 HSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIAR--IEPNN 829 + IG R Y QR+P++EY+ EA F + +++KD+V + + + Sbjct: 730 QLKEGIGLRQYGQRNPIREYQKEALESFEYMYENIKKDMVRNLLLSLLVFDK 781 >gnl|CDD|183825 PRK12903, secA, preprotein translocase subunit SecA; Reviewed. Length = 925 Score = 803 bits (2075), Expect = 0.0 Identities = 347/829 (41%), Positives = 493/829 (59%), Gaps = 58/829 (6%) Query: 6 AKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLDD 65 K S E R+ K IN+LE +L+D+ LANKT+EFK+R+ NGETL+D Sbjct: 1 MKFLKLFFFKSTEMRIAEKILK--QINDLEPYYRNLTDEELANKTNEFKDRLKNGETLED 58 Query: 66 LLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALS 125 + V AFAV RE +R LG RP+DVQ++GG+IL G VAEMKTGEGKT+ ++ PVYLNAL+ Sbjct: 59 IRVEAFAVAREATKRVLGKRPYDVQIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALT 118 Query: 126 GKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNEL 185 GKGV V TVN+YLA RD+ M ++ FLGLS G+ ++ + +R AYACDITY ++EL Sbjct: 119 GKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREAYACDITYSVHSEL 178 Query: 186 GFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSI 245 GFDYLRDNM + + VQRG NF ++DEVDSI IDEA+TPLIISG + S+LY D Sbjct: 179 GFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQF 238 Query: 246 IIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALK 305 + L DY+IDE+ + + +EKG ++ + +N LY EN +VH I NAL+ Sbjct: 239 VRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKN------LYDIENSELVHRIQNALR 292 Query: 306 SHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSI 365 +H + + +YIV ++ ++D+FTGR+M GR YS+G QA++AKE V+I+PE +TL++I Sbjct: 293 AHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATI 352 Query: 366 TFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKY 425 T+QN+F ++KLSGMTGTA TE +E +IYN+ V VPTN PVIR DE D I+ T K+ Sbjct: 353 TYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKW 412 Query: 426 AAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKEAYIISQA 485 A++ E+ HKKGQP+L+GT +E SE L L + +LNA + +EA II++A Sbjct: 413 KAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLE-ANIPHTVLNAKQNAREAEIIAKA 471 Query: 486 GIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKA 545 G GA+TIATNMAGRGTDI+L +EV L Sbjct: 472 GQKGAITIATNMAGRGTDIKLS----------------------------KEVLEL---- 499 Query: 546 IVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRMESFLR 605 GGLYV+ T++ ESRRIDNQLRGRSGRQGD G S+F++SL D L R F + + Sbjct: 500 ---GGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRFSN--FDKIKE 554 Query: 606 KIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQRLEIID 665 + I + +KA+ AQ+K+E NF+TRKN+L YDDV+ +QR +I+ QR I+ Sbjct: 555 AFKKLGDDEIKSKFFSKALLNAQKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILI 614 Query: 666 TENILEIIADMRHDTLHNIVEK---CIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEWRN 722 +++ +I M + I++ + NN+ K ++ L + I F ++ N Sbjct: 615 ADDLSHVIEKMISRAVEQILKNSFIILKNNTINYKELVEFLNDNLLRITHFKFSEKDFEN 674 Query: 723 ---DNGIDHTE--MSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSFWREHMAR 777 + + +++ F K I + R+I+L LD +W+ H+ Sbjct: 675 YHKEELAQYLIEALNEIYFKKRQVILDK----IALNTFFESERYIILSALDKYWQNHIDT 730 Query: 778 LEHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIE 826 ++ RS + Y+Q++P Q Y E FN LL + DV+ + Sbjct: 731 MDKLRSGVNLVQYSQKNPYQVYTEEGTKKFNILLQEIAYDVIVSLFNNP 779 >gnl|CDD|163426 TIGR03714, secA2, accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. Length = 762 Score = 651 bits (1682), Expect = 0.0 Identities = 304/810 (37%), Positives = 455/810 (56%), Gaps = 68/810 (8%) Query: 17 NERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLDDLLVPAFAVVRE 76 N RL+ + IN L+ +++ LSD+ L KT+EFK R+ GE+LDD+L A+AVVRE Sbjct: 2 NNLRLKKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVRE 61 Query: 77 VARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGVHVVTVND 136 +R LGM P+DVQ+LG ++LH+G +AEMKTGEGKTL A +P+YLNAL+GKG +VT ND Sbjct: 62 ADKRVLGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTND 121 Query: 137 YLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKR-----RAAYACDITYITNNELGFDYLR 191 YLA+RD+ M +Y++LGL+ + D D++ R Y DI Y TN+ LGFDYL Sbjct: 122 YLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLI 181 Query: 192 DNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSIIIQLHP 251 DN+ + R N+ IVDEVDS+ +D A+TPL+ISG S+LY D+ + L Sbjct: 182 DNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKE 241 Query: 252 S-DYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHTLF 310 DY + ++ V ++KG E+ E+ +NL YS E +V IN AL++H LF Sbjct: 242 DVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNL------YSEEYFELVRHINLALRAHYLF 295 Query: 311 LRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNY 370 RN+DY+V EVV++D TGR++ G + G HQA+EAKE V++ E + ++SIT+QN Sbjct: 296 KRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNL 355 Query: 371 FLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIA 430 F + KLSGMTGT +E Y+L V+++PTN P+IRID D+IY T EK A + Sbjct: 356 FKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLE 415 Query: 431 EIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKEAYIISQAGIPGA 490 ++ + H+ GQPVL+ T S+E SE + L + +LNA KEA II++AG GA Sbjct: 416 DVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPH-NLLNAQNAAKEAQIIAEAGQKGA 474 Query: 491 VTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAGG 550 VT+AT+MAGRGTDI+LG V EL GG Sbjct: 475 VTVATSMAGRGTDIKLGKGV-----AEL------------------------------GG 499 Query: 551 LYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRMESFLRKIGLK 610 L VI TER E+ R+D QLRGRSGRQGDPG S+F++SL+DDL++ + ++ + +K +K Sbjct: 500 LAVIGTERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWSPSWLKKYYKKYSVK 559 Query: 611 EG----EAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQRLEIIDT 666 + A+ K +E+AQ+ E + R+ ++++ L+ QR+ I+ +R +I+ Sbjct: 560 DSKLKPSALFKRRFRKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEG 619 Query: 667 ENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEWRND--- 723 + L+ D + ++ K +K+ I E F +ND Sbjct: 620 SDFLD---DDVDQIIDDVFNMYAEEQDLSNKSLLKRF---ILENLSYQF-----KNDPDE 668 Query: 724 -NGIDHTEMSKRIFAKADKIAEDQENSFGTEKMQA-LGRHILLHTLDSFWREHMARLEHS 781 + + + + ADK +++ + + R +L +D W E + L+ Sbjct: 669 FDLKNKEAIKDFLKEIADKELSEKKKVLNNDYLFNDFERLSILKAIDENWIEQVDYLQQL 728 Query: 782 RSIIGFRGYAQRDPLQEYKSEAFGFFNTLL 811 ++++ R QR+P+ EY EA + + Sbjct: 729 KTVVTNRQNGQRNPIFEYHKEALESYEYMK 758 >gnl|CDD|183820 PRK12898, secA, preprotein translocase subunit SecA; Reviewed. Length = 656 Score = 646 bits (1669), Expect = 0.0 Identities = 270/676 (39%), Positives = 372/676 (55%), Gaps = 79/676 (11%) Query: 5 LAKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLD 64 L ++ +L R R + + ++ LS+++L ++ + R+ + Sbjct: 22 LERVLGRLAGRVRGRAARRQRLLADRVLAAAEALAGLSEEALRARSLALRARLRARDGFR 81 Query: 65 DLLVP-AFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNA 123 D L+ AFA+VRE + R LG R FDVQL+GG+ L G +AEM+TGEGKTL A LP A Sbjct: 82 DALLAEAFALVREASGRVLGQRHFDVQLMGGLALLSGRLAEMQTGEGKTLTATLPAGTAA 141 Query: 124 LSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNN 183 L+G VHV+TVNDYLA RD+ M +Y+ LGL+ G V D S D+RRAAY DITY TN Sbjct: 142 LAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAYGADITYCTNK 201 Query: 184 ELGFDYLRDNMQYRRV-------------------DMVQRGHNFAIVDEVDSIFIDEART 224 EL FDYLRD + + ++ RG +FAIVDE DS+ IDEART Sbjct: 202 ELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEART 261 Query: 225 PLIISGPVEDHSDL--YRTIDSIIIQLHPS-DYEIDEKQRTVHFSEKGTERIEELLHGEN 281 PLIIS P ++ + YR + QL DY ID ++ + +E G RI EL Sbjct: 262 PLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLP 321 Query: 282 LLKSGGLYSFENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSD 341 G + E L+ AL + LF R+ YIV +VVI+DEFTGR+MP R + D Sbjct: 322 PAWRGAVRREE------LVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWED 375 Query: 342 GQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIE 401 G HQ +EAKE ++ +TL+ IT+Q +F +Y +L+GMTGTA A EL ++Y L V+ Sbjct: 376 GLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVR 435 Query: 402 VPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRK 461 +PTN P R DE++ T+ K+AA+ A + + H +G+PVLVGT S+ SE L++ LR+ Sbjct: 436 IPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLRE 495 Query: 462 HKFTKFQILNALYHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANI 521 Q+LNA +EA I+++AG G +T+ATNMAGRGTDI+L VA R Sbjct: 496 -AGLPHQVLNAKQDAEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAAR-------- 546 Query: 522 SDEEIRNKRIKMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRS 581 GGL+VI TERH+S RID QL GR GRQGDPG Sbjct: 547 ---------------------------GGLHVILTERHDSARIDRQLAGRCGRQGDPGSY 579 Query: 582 KFYLSLQDDLMRIFGSP------RMESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARN 635 + LSL+DDL++ F RME + G G ++ RAQ++ E + Sbjct: 580 EAILSLEDDLLQSFLGSRGLAIRRMELLGPRGGRALGALLLR--------RAQRRAERLH 631 Query: 636 FETRKNLLKYDDVLNE 651 R+ LL D+ L++ Sbjct: 632 ARARRALLHADEQLDK 647 >gnl|CDD|183824 PRK12902, secA, preprotein translocase subunit SecA; Reviewed. Length = 939 Score = 644 bits (1664), Expect = 0.0 Identities = 282/515 (54%), Positives = 359/515 (69%), Gaps = 24/515 (4%) Query: 11 KLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGET-------L 63 LL N R+L+ Y V IN LE+EI+ LSDD L KT+EF++R++ E+ L Sbjct: 4 LLLGDPNARKLKKYQPIVTEINLLEEEIAPLSDDELRAKTAEFRQRLDKAESDEEQREIL 63 Query: 64 DDLLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNA 123 D+LL AFAVVRE ++R LGMR FDVQL+GGM+LH+G +AEMKTGEGKTL A LP YLNA Sbjct: 64 DELLPEAFAVVREASKRVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNA 123 Query: 124 LSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNN 183 L+GKGVHVVTVNDYLARRD+ M +++FLGLS G++ D+S ++R+ YACDITY TN+ Sbjct: 124 LTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKNYACDITYATNS 183 Query: 184 ELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTID 243 ELGFDYLRDNM ++VQR N+ ++DEVDSI IDEARTPLIISG VE + Y+ Sbjct: 184 ELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQKAA 243 Query: 244 SIIIQL-------HPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAI 296 + L DYE+DEKQR V +++G + E+ LL L+ ++ Sbjct: 244 EVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQ------LLGVSDLFDPQD-PW 296 Query: 297 VHLINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQ 356 H I NALK+ LF+++ +YIV EVVI+DEFTGR+MPGRR+SDG HQA+EAKE V+IQ Sbjct: 297 AHYIFNALKAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQ 356 Query: 357 PENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDE 416 PE QTL+SIT+QN+FL Y KL+GMTGTA TE E Y L+V +PTN P R D D+ Sbjct: 357 PETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVTVIPTNRPRRRQDWPDQ 416 Query: 417 IYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYH- 475 +Y+T K+ A+ E + HK+G+PVLVGT S+EKSE L S L + + +LNA Sbjct: 417 VYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELL-SALLQEQGIPHNLLNAKPEN 475 Query: 476 -EKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGN 509 E+EA I++QAG GAVTIATNMAGRGTDI LGGN Sbjct: 476 VEREAEIVAQAGRKGAVTIATNMAGRGTDIILGGN 510 Score = 214 bits (546), Expect = 9e-56 Identities = 108/297 (36%), Positives = 176/297 (59%), Gaps = 9/297 (3%) Query: 529 KRIKMIQEEVQSLKEKAIV-AGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSL 587 RIK E V S + +V AGGL+VI TERHESRR+DNQLRGR+GRQGDPG ++F+LSL Sbjct: 628 NRIKKEYEVVTSQEHDEVVEAGGLHVIGTERHESRRVDNQLRGRAGRQGDPGSTRFFLSL 687 Query: 588 QDDLMRIFGSPRMESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDD 647 +D+L+RIFG R+ + ++E I + +++E AQ+KVE ++ RK + +YD+ Sbjct: 688 EDNLLRIFGGDRVAGLMNAFRVEEDMPIESGMLTRSLEGAQKKVETYYYDIRKQVFEYDE 747 Query: 648 VLNEQRKIIFEQRLEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEI 707 V+N QR+ I+ +R +++ ++ E + T+ IVE + + PE+WD+ +L +++ Sbjct: 748 VMNNQRRAIYAERRRVLEGRDLKEQVIGYGEKTMDEIVEAYVNPDLPPEEWDLDQLVSKV 807 Query: 708 YEIFGIHFPVLEWRNDNGIDHTEMSKRIF-----AKADKIAEDQENSFGTEKMQALGRHI 762 E F L+ + + E+ + F A + E Q + M+ R Sbjct: 808 KE-FVYLLEDLKPEDLEDLSVEEL--KAFLHEQLRIAYDLKEAQIDQIRPGLMREAERFF 864 Query: 763 LLHTLDSFWREHMARLEHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVV 819 +L +D+ WREH+ ++ R +G RGY Q+DPL EYK+E + F ++T++R++VV Sbjct: 865 ILQQIDTLWREHLQSMDALRESVGLRGYGQKDPLIEYKNEGYEMFLEMMTNIRRNVV 921 >gnl|CDD|148880 pfam07517, SecA_DEAD, SecA DEAD-like domain. SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270. Length = 381 Score = 626 bits (1616), Expect = e-180 Identities = 235/382 (61%), Positives = 287/382 (75%), Gaps = 5/382 (1%) Query: 11 KLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLDDLLVPA 70 KL NER L+ V IN LE+E LSD+ L KT E ++R+ GETLDD+L A Sbjct: 3 KLFGSKNERDLKRLRKIVDQINALEEEYKALSDEELRAKTQELRKRLRQGETLDDILPEA 62 Query: 71 FAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGVH 130 FA+VRE A+R LGMR +DVQL+GG++LH+G +AEMKTGEGKTL A LP YLNALSGKGVH Sbjct: 63 FALVREAAKRVLGMRHYDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVH 122 Query: 131 VVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNELGFDYL 190 VVTVNDYLA+RD+ M +Y+FLGLS GV+ D+S ++RR AY CDITY TN+ELGFDYL Sbjct: 123 VVTVNDYLAKRDAEWMGPLYEFLGLSVGVITSDMSPEERREAYNCDITYGTNSELGFDYL 182 Query: 191 RDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSIIIQLH 250 RDNM + D VQRG NFAIVDEVDSI IDEARTPLIISGPVED S+LY D+++ +L Sbjct: 183 RDNMALSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPVEDESELYLIADALVKKLK 242 Query: 251 PS-DYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHTL 309 DYE DEK+R V +E+G ++ EELL + L EN+ ++H +N ALK+H L Sbjct: 243 EDEDYEDDEKRRNVLLTEEGIKKAEELLLIDLLYDEWA----ENLELLHHVNQALKAHHL 298 Query: 310 FLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQN 369 F R+ DYIV EVVI+DEFTGR+M GRR+SDG HQA+EAKE V+I PE+QTL+SIT+QN Sbjct: 299 FERDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEITPESQTLASITYQN 358 Query: 370 YFLKYRKLSGMTGTASTEAEEL 391 +F Y KL+GMTGTA TEAEE Sbjct: 359 FFRLYPKLAGMTGTAKTEAEEF 380 >gnl|CDD|183441 PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed. Length = 764 Score = 568 bits (1467), Expect = e-162 Identities = 288/825 (34%), Positives = 412/825 (49%), Gaps = 121/825 (14%) Query: 11 KLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLDDLLVPA 70 +LL E+ A V A E E+E + LSD+ L E +N + D + Sbjct: 7 RLLGAPTEKNQSRSLALVTAAAEYEEEAADLSDEELRKAAGE----LNLDDLGDSDDLAE 62 Query: 71 F-AVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGV 129 F A+ RE A RTLG+RPFDVQLLG + L G V EM TGEGKTLA + AL G+ V Sbjct: 63 FLAIAREAAERTLGLRPFDVQLLGALRLLAGDVIEMATGEGKTLAGAIAAAGYALQGRRV 122 Query: 130 HVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNELGFDY 189 HV+TVNDYLARRD+ M +Y+ LGL+ G + + + ++RRAAYACD+TY + NE+GFD Sbjct: 123 HVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDV 182 Query: 190 LRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSIIIQL 249 LRD + D+V + AI+DE DS+ +DEA PL+++G + + ++ +L Sbjct: 183 LRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAE-LVRRL 241 Query: 250 HPS-DYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVA--IVHLINNALKS 306 DYEID+ R VH ++KG ++E+ L G +L YS E+V + +N AL + Sbjct: 242 REGKDYEIDDDGRNVHLTDKGARKVEKALGGIDL------YSEEHVGTTLTQ-VNVALHA 294 Query: 307 HTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSIT 366 H L R+ YIV +V +I+ GR+ +R+ DG A+EAKE ++ + L +IT Sbjct: 295 HALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTIT 354 Query: 367 FQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKYA 426 Q +Y + GMTGTA E+L Y+L V +P N P IR DE D +Y T+ EK Sbjct: 355 VQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKND 414 Query: 427 AIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKEAYIISQAG 486 AI+ I + H+ GQPVLVGT + +SE LA +LR +LNA +EA II++AG Sbjct: 415 AIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAV-VLNAKNDAEEARIIAEAG 473 Query: 487 IPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAI 546 GAVT++T MAGRGTDI+LGG SDE R + V L Sbjct: 474 KYGAVTVSTQMAGRGTDIRLGG-------------SDEADR--------DRVAEL----- 507 Query: 547 VAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFG-----SPRME 601 GGL+VI T RH S R+DNQLRGR+GRQGDPG S F++SL+DD++ + + Sbjct: 508 --GGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDDVVAANLAGEKLPAQPD 565 Query: 602 SFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQRL 661 E I P ++ AQ+ E + E N +Y+ ++ +QR I Sbjct: 566 ---------EDGRITSPKAADLVDHAQRVAEGQLLEIHANTWRYNQLIAQQRAI------ 610 Query: 662 EIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEWR 721 I + R L T+ W Sbjct: 611 -----------IVERRERLLR----------------------TD-----------TAWE 626 Query: 722 NDNGIDHTEMSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSFWREHMARLEHS 781 E+++ + ++AE+ E ++ R I+L+ LD W +H+A L Sbjct: 627 --------ELAELAPERYAELAEE----VDEEVLEQAARQIMLYHLDRGWADHLAYLADV 674 Query: 782 RSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIE 826 R I R +++PL E+ A F +L + E Sbjct: 675 RESIHLRALGRQNPLDEFHRMAVDAFKSLAADAVERAQETFETAE 719 >gnl|CDD|183823 PRK12901, secA, preprotein translocase subunit SecA; Reviewed. Length = 1112 Score = 548 bits (1415), Expect = e-156 Identities = 275/734 (37%), Positives = 379/734 (51%), Gaps = 154/734 (20%) Query: 256 IDEKQRTVHFSEKGTERI-------------------------------EELLHGENLLK 284 IDEK +V ++KG + I EE E L + Sbjct: 418 IDEKNNSVELTDKGIDYITGNDEDPDFFVLPDIGTELAEIENEGGLDEEEEAEKKEELFQ 477 Query: 285 SGGLYSFENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQH 344 YS VH +N LK++TLF ++ +Y+V +V I+DE TGR+M GRRYSDG H Sbjct: 478 D---YS-VKSERVHTLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLH 533 Query: 345 QALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPT 404 QA+EAKE VKI+ QT ++IT QNYF Y KL+GMTGTA TEA E +IY LDV+ +PT Sbjct: 534 QAIEAKENVKIEAATQTFATITLQNYFRMYHKLAGMTGTAETEAGEFWDIYKLDVVVIPT 593 Query: 405 NVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKF 464 N P+ R D+ D +Y+T EKY A+I EI + + G+PVLVGT S+E SE L+ L+ K Sbjct: 594 NRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKI 653 Query: 465 TKFQILNALYHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDE 524 +LNA H+KEA I+++AG PG VTIATNMAGRGTDI+L V Sbjct: 654 -PHNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLSPEV-------------- 698 Query: 525 EIRNKRIKMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFY 584 KA AGGL +I TERHESRR+D QLRGR+GRQGDPG S+FY Sbjct: 699 -------------------KA--AGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 Query: 585 LSLQDDLMRIFGSPRMESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLK 644 +SL+D+LMR+FGS R+ + ++GLKEGE I H I+K+IERAQ+KVE NF RK LL+ Sbjct: 738 VSLEDNLMRLFGSERIAKVMDRMGLKEGEVIQHSMISKSIERAQKKVEENNFGIRKRLLE 797 Query: 645 YDDVLNEQRKIIFEQRLEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLE 704 YDDV+N QR++I+++R + E + IA+M +D IVE D K + Sbjct: 798 YDDVMNSQREVIYKRRRHALMGERLGMDIANMIYDVCEAIVEN------NKVANDYKGFK 851 Query: 705 TEIYEIFGIHFPVLEWRNDNGIDHTEMSKRIF--------AKADKIA-----------ED 745 E+ + P+ E N + E++ +++ K ++IA E+ Sbjct: 852 FELIRTLAMESPITE-EEFNKLKKDELTDKLYDAALENYQRKMERIAEIAFPVIKQVYEE 910 Query: 746 QENSF---------------------------GTEKMQALGRHILLHTLDSFWREHMARL 778 Q N + G E ++ ++I LH +D W+EH+ + Sbjct: 911 QGNMYERIVVPFTDGKRTLNVVTNLKEAYETEGKEIVKDFEKNITLHIIDEAWKEHLREM 970 Query: 779 EHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVS-----QIARIEPNNI--- 830 + + + Y Q+DPL YK E+F F ++ + ++V+S +I E I Sbjct: 971 DELKQSVQNASYEQKDPLLIYKFESFELFKNMVDKVNREVISFLFKGEIPVQEAPEIREA 1030 Query: 831 ------------NNQELNNSLPYIAENDHGPVIQKENELDTPNVCKTSKIKRNHPCPC-- 876 +E+ +S A + KE TP V KI RN P PC Sbjct: 1031 APERRLDPKYRTQKEEIQDSDQRAAASRDTGAQVKE----TP-VRVEKKIGRNDPVPCQN 1085 Query: 877 ---GSGKKYKHCHG 887 GSGKKYK H Sbjct: 1086 VDGGSGKKYKFKHA 1099 Score = 274 bits (704), Expect = 6e-74 Identities = 131/332 (39%), Positives = 162/332 (48%), Gaps = 98/332 (29%) Query: 19 RRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNG------------------ 60 + ++P K I E+ LS+D L KT EFK+ I Sbjct: 18 KEIQPIVEK---IKAEYPELEALSNDELRAKTDEFKQYIKEAVADIDAKIEELKAEAIES 74 Query: 61 -------------------------ETLDDLLVPAFAVVREVARRTLG------------ 83 + LD++L AFA+V+E ARR Sbjct: 75 LDIDEREDIYAQIDKLEKEAYEILEKVLDEILPEAFAIVKETARRFAENEEIEVTATDFD 134 Query: 84 ---------------------------------MRPFDVQLLGGMILHKGCVAEMKTGEG 110 M +DVQL+GG++LH+G +AEM TGEG Sbjct: 135 RELAATKDFVTIEGDKAIWKNHWDAGGNEITWDMVHYDVQLIGGVVLHQGKIAEMATGEG 194 Query: 111 KTLAAVLPVYLNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVV-FHDLSDDKR 169 KTL A LPVYLNAL+G GVHVVTVNDYLA+RDS M +Y+F GLS + H + + R Sbjct: 195 KTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDKHQPNSEAR 254 Query: 170 RAAYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIIS 229 R AY DITY TNNE GFDYLRDNM + D+VQR HN+AIVDEVDS+ ID+ARTPLIIS Sbjct: 255 RKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIIS 314 Query: 230 GPVEDHSDLYRTIDSIIIQLHPSDYEIDEKQR 261 GPV D +L P + E QR Sbjct: 315 GPVPKGD------DQEFEELKPRVERLVEAQR 340 >gnl|CDD|183822 PRK12900, secA, preprotein translocase subunit SecA; Reviewed. Length = 1025 Score = 515 bits (1329), Expect = e-146 Identities = 267/684 (39%), Positives = 380/684 (55%), Gaps = 94/684 (13%) Query: 254 YEIDEKQRTVHFSEKGTERIEELLH--------------------------GENLLKSGG 287 + +DEK T+ ++KG E + +L H + + K Sbjct: 385 FAVDEKANTIDLTDKGREFLSKLSHQDSDLFLLPDVGTEIAAIESDASLSAADKIKKKDE 444 Query: 288 LYSF--ENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQ 345 +Y E +H I+ LK+++LF R+ +Y+V +V+I+DEFTGR++PGRRYSDG HQ Sbjct: 445 VYRLFAERSERLHNISQLLKAYSLFERDDEYVVQNGQVMIVDEFTGRILPGRRYSDGLHQ 504 Query: 346 ALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTN 405 A+EAKE VKI+ E QT+++IT QN+F Y+KL+GMTGTA TEA E IY LDV+ +PTN Sbjct: 505 AIEAKENVKIEGETQTMATITIQNFFRLYKKLAGMTGTAETEASEFFEIYKLDVVVIPTN 564 Query: 406 VPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFT 465 P++R D D +Y+T EKY AI+ ++ + KKGQPVLVGT S+E SE L+ LR + Sbjct: 565 KPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIA 624 Query: 466 KFQILNALYHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEE 525 +LNA H++EA I+++AG GAVTIATNMAGRGTDI+LG E Sbjct: 625 H-NVLNAKQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLG----------------EG 667 Query: 526 IRNKRIKMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYL 585 +R GGL+++ +ERHESRRID QLRGR+GRQGDPG S FY+ Sbjct: 668 VREL-------------------GGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYV 708 Query: 586 SLQDDLMRIFGSPRMESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKY 645 SL+D+LMR+FGS R+ S + ++G +EG+ I H I K+IERAQ+KVE +NF RK LL+Y Sbjct: 709 SLEDELMRLFGSDRVISVMDRLGHEEGDVIEHSMITKSIERAQKKVEEQNFAIRKRLLEY 768 Query: 646 DDVLNEQRKIIFEQRLEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLET 705 DDVLN+QR++I+ +R + E + I D+ D +V+K Y + D+ LE Sbjct: 769 DDVLNQQREVIYTRRRNGLIKERLTSDIFDLLRDYCDTVVKK------YHKALDVDGLEE 822 Query: 706 EIYEIFGIHF-PVLEWRNDNGIDHTEMSKRIFAKADKIAEDQENSFGTEKMQALGRHILL 764 ++ + F P + G++ + +++ A +E + + M+ + ++ +L Sbjct: 823 QVLRELSVEFKPERDTFEREGVE--GTADKLYNTALAFYRRKEEAVPEDIMRQIEKYAVL 880 Query: 765 HTLDSFWREHMARLEHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVS---- 820 +D WREH+ ++ R I R Y Q+DPL EYK EA+ F LL + + +S Sbjct: 881 SVIDQKWREHLREIDSLREGINLRAYGQKDPLLEYKQEAYRLFVDLLREIELETLSLAFK 940 Query: 821 -------QIARIEPNNINNQELNNSL---------PYIAENDHGPVIQKENELDTPNVCK 864 + IE + L Y A D ENE Sbjct: 941 LFPVTPEEAEEIEERQRKSAVRQEKLVAQHEEAESAYNASADAPETRAPENEEPKQQPVI 1000 Query: 865 T-SKIKRNHPCPCGSGKKYKHCHG 887 K RN PCPCGSGKKYK+CHG Sbjct: 1001 AEKKPGRNDPCPCGSGKKYKNCHG 1024 Score = 254 bits (651), Expect = 6e-68 Identities = 126/301 (41%), Positives = 169/301 (56%), Gaps = 58/301 (19%) Query: 7 KLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFK------------ 54 K+ K+ +E+ ++ + INE++ ++ LSDD+L K E K Sbjct: 3 KIFEKIFGSKHEKDIKKIQPIIDRINEIQASLASLSDDALREKGMELKSRVRGALEPIEQ 62 Query: 55 -------------------ERINN-------------GETLDDLLVPAFAVVREVARRTL 82 E IN L+++L FA+V+E RR Sbjct: 63 KKKDLEKKLDNPDISLEEAESINEELDTLAKEYEEATAAALEEILPETFALVKETCRRLK 122 Query: 83 G-------------MRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGV 129 G M P+DVQL+GG++LH G ++EM TGEGKTL + LP +LNAL+G+GV Sbjct: 123 GHTYQVMGREMTWDMVPYDVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALTGRGV 182 Query: 130 HVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNELGFDY 189 HVVTVNDYLA+RD M+ +++F GLS GV+ + + ++RR Y CDITY TNNE GFDY Sbjct: 183 HVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNTMRPEERREQYLCDITYGTNNEFGFDY 242 Query: 190 LRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDL-YRTIDSIIIQ 248 LRDNM +MVQR FAIVDEVDS+ IDEARTPLIISGPV + + ++ I I Q Sbjct: 243 LRDNMAGTPEEMVQRDFYFAIVDEVDSVLIDEARTPLIISGPVPNADNSKFQEIKPWIEQ 302 Query: 249 L 249 L Sbjct: 303 L 303 >gnl|CDD|183821 PRK12899, secA, preprotein translocase subunit SecA; Reviewed. Length = 970 Score = 462 bits (1191), Expect = e-130 Identities = 225/579 (38%), Positives = 328/579 (56%), Gaps = 58/579 (10%) Query: 298 HLINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQP 357 H + L++H L ++ DYIV D++VIIDE TGR PGRR+S+G HQA+EAKE V I+ Sbjct: 427 HGLRQLLRAHLLMEKDVDYIVRDDQIVIIDEHTGRPQPGRRFSEGLHQAIEAKEHVTIRK 486 Query: 358 ENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEI 417 E+QT +++T QN+F Y KL+GMTGTA TE+ E IYNL V++VPT P +RID +DE Sbjct: 487 ESQTFATVTLQNFFRLYEKLAGMTGTAITESREFKEIYNLYVLQVPTFKPCLRIDHNDEF 546 Query: 418 YRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEK 477 Y T EKY AI+AEI H+KG P+L+GT S+E SE L+ LR+++ + +LNA H + Sbjct: 547 YMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRI-EHTVLNAKNHAQ 605 Query: 478 EAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEE 537 EA II+ AG GAVT+ATNMAGRGTDI+L Sbjct: 606 EAEIIAGAGKLGAVTVATNMAGRGTDIKL------------------------------- 634 Query: 538 VQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGS 597 E+A+ GGLYVI T RH+SRRID QLRGR R GDPG +KF+LS +D LMR+F S Sbjct: 635 ----DEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRLMRLFAS 690 Query: 598 PRMESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIF 657 P++ + +R EGEA+ P N+ IE AQ++VE RN+ RK+ L+YDDV+N+QR+ I+ Sbjct: 691 PKLNTLIRHFRPPEGEAMSDPMFNRLIETAQKRVEGRNYTIRKHTLEYDDVMNKQRQTIY 750 Query: 658 EQRLEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPV 717 R +++ E+I + ++ + I + + + + KLE + F + Sbjct: 751 AFRNDVLHAEDIFVVAKEIIEHVALMLASL-ILKDRHADGCSLPKLEEWLSYSFPVKLDD 809 Query: 718 LEWRNDNGIDHTEMSKRIFAKADKIAEDQENSF----------GTEKMQALG------RH 761 E R D ++++I AD + E + F E + A G R Sbjct: 810 QELRRLGDTD--AIAEKI---ADLLIEAFQVKFSSMVAEFTEAIGEAVDAQGICNDILRS 864 Query: 762 ILLHTLDSFWREHMARLEHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQ 821 +++ +D W+ H+ ++ RS +G R Q+DPL E+K E+F F +L+ +R +V Sbjct: 865 VMIMHIDEQWKIHLVDMDLLRSEVGLRTVGQKDPLIEFKHESFLLFESLIRDIRIAIVKH 924 Query: 822 IARIEPNNINNQELNNSLPYIAENDHGPVIQKENELDTP 860 + R+E + +N +P +A + H EL Sbjct: 925 LFRLELTLTRSDRPDNVIPTVATSFHNHENFGPMELTVV 963 Score = 271 bits (694), Expect = 6e-73 Identities = 123/243 (50%), Positives = 164/243 (67%), Gaps = 14/243 (5%) Query: 11 KLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLDDLLVPA 70 + S ER L+ + V +N +++ S LSDD L NKT+E K+R +GE+LD LL A Sbjct: 7 RFFGSSQERILKRFQKLVEKVNAYDEKFSSLSDDELRNKTAELKQRYQDGESLDKLLPEA 66 Query: 71 FAVVREVARRTLG-------------MRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVL 117 + VV+ V RR G M P+DVQ+LG + +HKG + EM+TGEGKTL AV+ Sbjct: 67 YGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVM 126 Query: 118 PVYLNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDI 177 P+YLNAL+GK VH+VTVNDYLA+RD + ++ ++LGL+TGV+ +KR+ Y CD+ Sbjct: 127 PLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDV 186 Query: 178 TYITNNELGFDYLRDN-MQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHS 236 Y T +E GFDYLRDN + R+ + V RG FAI+DEVDSI IDEARTPLIISGP E H+ Sbjct: 187 VYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILIDEARTPLIISGPGEKHN 246 Query: 237 DLY 239 +Y Sbjct: 247 PVY 249 >gnl|CDD|148879 pfam07516, SecA_SW, SecA Wing and Scaffold domain. SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This family is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains. Length = 211 Score = 250 bits (642), Expect = 8e-67 Identities = 88/213 (41%), Positives = 135/213 (63%), Gaps = 2/213 (0%) Query: 614 AIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQRLEIIDTENILEII 673 I + KAIE AQ+KVE RNF+ RKNLL+YDDVLN+QRK+I+ QR EI++ E++ EII Sbjct: 1 PIESKMVTKAIENAQKKVEGRNFDIRKNLLEYDDVLNQQRKVIYAQRNEILEGEDLKEII 60 Query: 674 ADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEWRNDNGIDHTEMSK 733 +M D + +IVE+ P S PE+WD++ LE + + G+ + E G+ E+ + Sbjct: 61 LEMIEDVIDDIVEEYAPEKS-PEEWDLEGLEEALRSLLGLDLDIDEL-ELEGLTAEELKE 118 Query: 734 RIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSFWREHMARLEHSRSIIGFRGYAQR 793 ++ A + E++E G E M+ + R I+L +D W+EH+ ++H R IG RGY Q+ Sbjct: 119 KLIEAAKEAYEEKEAELGEELMREIERRIMLQVIDELWKEHLDAMDHLREGIGLRGYGQK 178 Query: 794 DPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIE 826 DPL EYK EAF F +L ++++VV + R++ Sbjct: 179 DPLVEYKREAFELFEEMLEDIKEEVVRYLFRVQ 211 >gnl|CDD|180153 PRK05590, PRK05590, hypothetical protein; Provisional. Length = 166 Score = 56.5 bits (137), Expect = 3e-08 Identities = 17/26 (65%), Positives = 19/26 (73%) Query: 862 VCKTSKIKRNHPCPCGSGKKYKHCHG 887 V +K+ RN PCPCGSGKKYK C G Sbjct: 139 VVNENKVGRNDPCPCGSGKKYKKCCG 164 >gnl|CDD|179309 PRK01617, PRK01617, hypothetical protein; Provisional. Length = 154 Score = 47.0 bits (112), Expect = 2e-05 Identities = 14/21 (66%), Positives = 16/21 (76%) Query: 867 KIKRNHPCPCGSGKKYKHCHG 887 + RN PCPCGSGKK+K C G Sbjct: 133 QFGRNDPCPCGSGKKFKKCCG 153 Score = 31.5 bits (72), Expect = 1.0 Identities = 9/18 (50%), Positives = 10/18 (55%) Query: 873 PCPCGSGKKYKHCHGSYL 890 CPCGS +Y C YL Sbjct: 4 LCPCGSALEYSLCCQPYL 21 >gnl|CDD|166842 PRK00183, PRK00183, hypothetical protein; Provisional. Length = 157 Score = 44.8 bits (106), Expect = 1e-04 Identities = 15/24 (62%), Positives = 17/24 (70%) Query: 867 KIKRNHPCPCGSGKKYKHCHGSYL 890 K RN PCPCGSG+K+K C YL Sbjct: 133 KAGRNDPCPCGSGQKFKKCCAPYL 156 >gnl|CDD|182427 PRK10396, PRK10396, hypothetical protein; Provisional. Length = 221 Score = 44.4 bits (105), Expect = 1e-04 Identities = 14/19 (73%), Positives = 16/19 (84%) Query: 867 KIKRNHPCPCGSGKKYKHC 885 K+ RN PCPCGSGKK+K C Sbjct: 200 KVGRNDPCPCGSGKKFKQC 218 >gnl|CDD|128763 smart00487, DEXDc, DEAD-like helicases superfamily. Length = 201 Score = 44.4 bits (105), Expect = 1e-04 Identities = 36/154 (23%), Positives = 54/154 (35%), Gaps = 20/154 (12%) Query: 85 RPFDVQLLGGMILHKG---CVAEMKTGEGKTLAAVLPVYLNALSGKGVHVV----TVNDY 137 Q L G + TG GKTLAA+LP GKG V+ T Sbjct: 8 PLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRE-- 65 Query: 138 LARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYA---CDITYITNNELGFDYLRDNM 194 LA + + + + LGL ++ S ++ DI T L D + Sbjct: 66 LAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLL 125 Query: 195 QYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLII 228 + VD+V I+DE + +D + Sbjct: 126 ELSNVDLV-------ILDEAHRL-LDGGFGDQLE 151 >gnl|CDD|179332 PRK01752, PRK01752, hypothetical protein; Provisional. Length = 156 Score = 44.0 bits (104), Expect = 2e-04 Identities = 14/19 (73%), Positives = 15/19 (78%) Query: 872 HPCPCGSGKKYKHCHGSYL 890 PC CGSGKK+KHC G YL Sbjct: 138 QPCVCGSGKKFKHCCGGYL 156 Score = 29.8 bits (67), Expect = 3.3 Identities = 9/17 (52%), Positives = 10/17 (58%) Query: 873 PCPCGSGKKYKHCHGSY 889 CPC SGK Y C G + Sbjct: 7 ACPCQSGKHYADCCGPF 23 >gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional. Length = 291 Score = 43.7 bits (103), Expect = 2e-04 Identities = 15/19 (78%), Positives = 17/19 (89%) Query: 868 IKRNHPCPCGSGKKYKHCH 886 +KRN PC CGSGKK+KHCH Sbjct: 1 MKRNDPCWCGSGKKWKHCH 19 >gnl|CDD|179393 PRK02250, PRK02250, hypothetical protein; Provisional. Length = 166 Score = 41.8 bits (98), Expect = 7e-04 Identities = 14/21 (66%), Positives = 15/21 (71%) Query: 867 KIKRNHPCPCGSGKKYKHCHG 887 K RN PC CGSGKK+K C G Sbjct: 146 KQGRNDPCICGSGKKFKKCCG 166 >gnl|CDD|152573 pfam12138, Spherulin4, Spherulation-specific family 4. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein. Length = 243 Score = 30.8 bits (70), Expect = 1.7 Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 5/41 (12%) Query: 214 VDSIFIDEARTPLIISGPVEDHSDLYRTIDSIIIQLHPSDY 254 VD IF+DE S + + YR I S I L Sbjct: 104 VDGIFLDET-----PSDYNASYLEYYRNITSYIKGLGGDGL 139 >gnl|CDD|182976 PRK11119, proX, glycine betaine transporter periplasmic subunit; Provisional. Length = 331 Score = 29.9 bits (68), Expect = 2.7 Identities = 10/20 (50%), Positives = 16/20 (80%) Query: 424 KYAAIIAEIIDSHKKGQPVL 443 YAA++A+ I +K+G+PVL Sbjct: 186 NYAALMADTIARYKEGKPVL 205 >gnl|CDD|151095 pfam10552, ORF6C, ORF6C domain. This domain was identified by Iyer and colleagues. Length = 114 Score = 29.9 bits (68), Expect = 3.1 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 3/80 (3%) Query: 528 NKRIKMIQEEVQSLKEKAIVAGGLY-VISTERHESRRIDNQLRGRSGRQGDPGRSKFYLS 586 ++I+ I+E+V L+E + G I + ++R+ L G+ R K + Sbjct: 14 KEKIEEIEEKVDDLEENMPLFAGEAKEIQ--KKVNKRVVELLGGKGSPAYKNLRKKVFRD 71 Query: 587 LQDDLMRIFGSPRMESFLRK 606 + L R FG ++ RK Sbjct: 72 IYRQLKREFGVSSYKAIPRK 91 >gnl|CDD|179710 PRK04016, PRK04016, DNA-directed RNA polymerase subunit N; Provisional. Length = 62 Score = 29.9 bits (68), Expect = 3.3 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 9/41 (21%) Query: 46 LANKTSEFKERINNGE----TLDDLLVPAFAVVREVARRTL 82 +A K EFKER+ GE LDDL V R RR L Sbjct: 14 IAEKWEEFKERVEAGEDPGKVLDDL-----GVKRYCCRRML 49 >gnl|CDD|181498 PRK08601, PRK08601, NADH dehydrogenase subunit 5; Validated. Length = 509 Score = 29.6 bits (67), Expect = 3.5 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Query: 287 GLYSFENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVI 325 G YS AI+HLI + L TLFL++ V R +V Sbjct: 312 GAYS---AAIIHLILHGLFKATLFLQS-GSAVPRFNIVK 346 >gnl|CDD|131431 TIGR02378, nirD_assim_sml, nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused. Length = 105 Score = 29.6 bits (67), Expect = 3.8 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 7/72 (9%) Query: 397 LDVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPV---LVGTPSIEKSE 453 +D I T V V+ D I+R ++ AI + + HK+ + +VG + Sbjct: 8 IDDIPEETGVCVLLGDTQIAIFRVPGDQVFAI--QNMCPHKRAFVLSRGIVGD--AQGEL 63 Query: 454 YLASQLRKHKFT 465 ++A L K F Sbjct: 64 WVACPLHKRNFR 75 >gnl|CDD|163096 TIGR02987, met_A_Alw26, type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. Length = 524 Score = 29.4 bits (66), Expect = 4.8 Identities = 11/54 (20%), Positives = 19/54 (35%) Query: 620 INKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQRLEIIDTENILEII 673 + + +R + KY V E ++ E LEI + + II Sbjct: 142 KYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNGYVSII 195 >gnl|CDD|183571 PRK12522, PRK12522, RNA polymerase sigma factor; Provisional. Length = 173 Score = 28.7 bits (64), Expect = 7.6 Identities = 12/30 (40%), Positives = 18/30 (60%) Query: 515 EHELANISDEEIRNKRIKMIQEEVQSLKEK 544 + NIS+E I+ +MI+E +Q L EK Sbjct: 94 FADDVNISEEFIQKVEAEMIREVIQLLNEK 123 >gnl|CDD|181881 PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional. Length = 810 Score = 28.4 bits (64), Expect = 7.8 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 16/56 (28%) Query: 199 VDMVQRGHNFAIVDEVDSIFIDEAR----TPLIISGP----------VEDHSDLYR 240 V+ V+ H A + D++F E+R PL+I GP + SDL R Sbjct: 752 VEAVRPDHPLANLLPCDNVFAIESRWYRDNPLVIRGPGAGREVTAGAI--QSDLNR 805 >gnl|CDD|181513 PRK08638, PRK08638, threonine dehydratase; Validated. Length = 333 Score = 28.5 bits (64), Expect = 8.2 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 11/75 (14%) Query: 501 GTDIQLGGNVAMRIEHELAN----ISDEEIRNKRIKMIQEEVQSLKEKAIVAGGLYVIST 556 G D+ GN+ I EL + +S++EIRN +IQ +V G ++T Sbjct: 237 GCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQ-------RNKVVTEGAGALAT 289 Query: 557 ERHESRRIDNQLRGR 571 S ++D ++ + Sbjct: 290 AALLSGKLDQYIQNK 304 >gnl|CDD|102361 PRK06404, PRK06404, anthranilate synthase component I; Reviewed. Length = 351 Score = 28.3 bits (63), Expect = 8.3 Identities = 11/28 (39%), Positives = 14/28 (50%) Query: 36 KEISHLSDDSLANKTSEFKERINNGETL 63 K + +D SL+ K E E I GE L Sbjct: 97 KLKGNYNDISLSLKIKELIELIRAGEVL 124 >gnl|CDD|178488 PLN02900, PLN02900, alanyl-tRNA synthetase. Length = 936 Score = 28.4 bits (64), Expect = 8.7 Identities = 11/28 (39%), Positives = 13/28 (46%) Query: 88 DVQLLGGMILHKGCVAEMKTGEGKTLAA 115 DVQ GG +LH G V E G + Sbjct: 557 DVQKAGGFVLHIGTVTEGSVSVGDAVTC 584 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.318 0.136 0.387 Gapped Lambda K H 0.267 0.0711 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 14,923,244 Number of extensions: 1030535 Number of successful extensions: 2445 Number of sequences better than 10.0: 1 Number of HSP's gapped: 2355 Number of HSP's successfully gapped: 83 Length of query: 890 Length of database: 5,994,473 Length adjustment: 102 Effective length of query: 788 Effective length of database: 3,790,457 Effective search space: 2986880116 Effective search space used: 2986880116 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 62 (27.7 bits)