BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter asiaticus str. psy62] (890 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter asiaticus str. psy62] Length = 890 Score = 1840 bits (4765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 890/890 (100%), Positives = 890/890 (100%) Query: 1 MLSHLAKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNG 60 MLSHLAKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNG Sbjct: 1 MLSHLAKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNG 60 Query: 61 ETLDDLLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVY 120 ETLDDLLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVY Sbjct: 61 ETLDDLLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVY 120 Query: 121 LNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYI 180 LNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYI Sbjct: 121 LNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYI 180 Query: 181 TNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYR 240 TNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYR Sbjct: 181 TNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYR 240 Query: 241 TIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLI 300 TIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLI Sbjct: 241 TIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLI 300 Query: 301 NNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQ 360 NNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQ Sbjct: 301 NNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQ 360 Query: 361 TLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRT 420 TLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRT Sbjct: 361 TLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRT 420 Query: 421 SEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKEAY 480 SEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKEAY Sbjct: 421 SEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKEAY 480 Query: 481 IISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQS 540 IISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQS Sbjct: 481 IISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQS 540 Query: 541 LKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRM 600 LKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRM Sbjct: 541 LKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRM 600 Query: 601 ESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQR 660 ESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQR Sbjct: 601 ESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQR 660 Query: 661 LEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEW 720 LEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEW Sbjct: 661 LEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEW 720 Query: 721 RNDNGIDHTEMSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSFWREHMARLEH 780 RNDNGIDHTEMSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSFWREHMARLEH Sbjct: 721 RNDNGIDHTEMSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSFWREHMARLEH 780 Query: 781 SRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIEPNNINNQELNNSLP 840 SRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIEPNNINNQELNNSLP Sbjct: 781 SRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIEPNNINNQELNNSLP 840 Query: 841 YIAENDHGPVIQKENELDTPNVCKTSKIKRNHPCPCGSGKKYKHCHGSYL 890 YIAENDHGPVIQKENELDTPNVCKTSKIKRNHPCPCGSGKKYKHCHGSYL Sbjct: 841 YIAENDHGPVIQKENELDTPNVCKTSKIKRNHPCPCGSGKKYKHCHGSYL 890 >gi|254780384|ref|YP_003064797.1| serralysin [Candidatus Liberibacter asiaticus str. psy62] Length = 665 Score = 28.9 bits (63), Expect = 0.40, Method: Compositional matrix adjust. Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Query: 584 YLSLQDDLMRIFGSPRMESFLRKI--GLKEGEAI 615 YL+ DDL +FGS R + I G+KEG A+ Sbjct: 572 YLTSYDDLWNVFGSDRSAAAQHYITHGMKEGRAL 605 Score = 26.2 bits (56), Expect = 2.6, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 17/125 (13%) Query: 581 SKFYLSLQDDLMRIFGSPRMESFLRKI--GLKEGEAIIHPWINKAIERAQQKVEARN-FE 637 S YL DDL +FGS R + I G+KEG +P KA+E + N F Sbjct: 401 SYLYLGSYDDLRNVFGSDRGAAARHYITHGVKEGR---NPDAFKALEYIASHEDLINAFA 457 Query: 638 TRKNLLKY--DDVLN----EQRKIIFEQRLEIIDTENILEII-----ADMRHDTLHNIVE 686 +L++ D N E R + F+ L + +++ + A RH H + E Sbjct: 458 DAPDLVQVGKDHFSNFGCEEGRFVTFDSYLYLGSYDDLRNVFGSDRGAAARHYITHGVKE 517 Query: 687 KCIPN 691 P+ Sbjct: 518 GRNPD 522 Score = 25.8 bits (55), Expect = 2.9, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 12/106 (11%) Query: 581 SKFYLSLQDDLMRIFGSPRMESFLRKI--GLKEGEAIIHPWINKAIERAQQKVEARN-FE 637 S YL DDL +FGS R + I G+KEG +P KA+E + N F Sbjct: 485 SYLYLGSYDDLRNVFGSDRGAAARHYITHGVKEGR---NPDAFKALEYIASHEDLINAFA 541 Query: 638 TRKNLLKY--DDVLN----EQRKIIFEQRLEIIDTENILEIIADMR 677 +L++ D N E R I F L + +++ + R Sbjct: 542 DAPDLVQAGKDHFSNFGYEEGRSITFNPDLYLTSYDDLWNVFGSDR 587 >gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus Liberibacter asiaticus str. psy62] Length = 452 Score = 28.5 bits (62), Expect = 0.46, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 9/66 (13%) Query: 635 NFETRKNLLKYDDV-LNEQRKIIFEQRLEIIDT--------ENILEIIADMRHDTLHNIV 685 N +T K ++D LN+ KI +Q L I+ ENIL + AD+ + +I Sbjct: 46 NIDTLKWWESFNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASIS 105 Query: 686 EKCIPN 691 + IPN Sbjct: 106 HRFIPN 111 >gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 478 Score = 26.9 bits (58), Expect = 1.4, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 7/115 (6%) Query: 198 RVDMVQRGHNFAIVDEVDSIFIDEARTPL-----IISGPVEDHSDLYRTIDSIIIQLHPS 252 R D + RG ++D I + L +I PV+D + + I Q PS Sbjct: 65 RTDGLSRGD--CVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPS 122 Query: 253 DYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSH 307 E + K + I G + GG + V I+ LINN K+H Sbjct: 123 YTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAH 177 >gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 26.2 bits (56), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 23/48 (47%) Query: 322 EVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQN 369 +V + D TGR M S G H+A E +++ K L +I F N Sbjct: 23 DVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVN 70 >gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 25.8 bits (55), Expect = 3.5, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Query: 534 IQEEVQSLK--EKAIVAGGLY-VISTERHESRRIDNQLRGRSGR 574 I+E Q L+ EKA+ AGGL V+S E R + RSG+ Sbjct: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGK 268 >gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62] Length = 458 Score = 25.4 bits (54), Expect = 4.1, Method: Compositional matrix adjust. Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 82 LGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPV-YLNALSGKGVHVV 132 + + P +++ ++ HK C G GKT++ + + Y++ K V V+ Sbjct: 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVI 52 >gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 1386 Score = 24.6 bits (52), Expect = 6.8, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%) Query: 21 LRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLDDLLVPAFAVVREVARR 80 LR + KVI ++IS DDS+ ++K + + P F E A Sbjct: 1168 LRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGV-------PVSTPVFDGADEEAIN 1220 Query: 81 TLGMRPFDVQLLGGMILHKGCVAE 104 ++ +R D+ G IL+ G E Sbjct: 1221 SM-LRMADLDESGQSILYDGLTGE 1243 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.136 0.387 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 572,823 Number of Sequences: 1233 Number of extensions: 25064 Number of successful extensions: 87 Number of sequences better than 100.0: 13 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 78 Number of HSP's gapped (non-prelim): 18 length of query: 890 length of database: 328,796 effective HSP length: 82 effective length of query: 808 effective length of database: 227,690 effective search space: 183973520 effective search space used: 183973520 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 43 (21.2 bits)