BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780327|ref|YP_003064740.1| preprotein translocase subunit
SecA [Candidatus Liberibacter asiaticus str. psy62]
         (890 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 890

 Score = 1840 bits (4765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 890/890 (100%), Positives = 890/890 (100%)

Query: 1   MLSHLAKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNG 60
           MLSHLAKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNG
Sbjct: 1   MLSHLAKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNG 60

Query: 61  ETLDDLLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVY 120
           ETLDDLLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVY
Sbjct: 61  ETLDDLLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVY 120

Query: 121 LNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYI 180
           LNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYI
Sbjct: 121 LNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYI 180

Query: 181 TNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYR 240
           TNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYR
Sbjct: 181 TNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYR 240

Query: 241 TIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLI 300
           TIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLI
Sbjct: 241 TIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLI 300

Query: 301 NNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQ 360
           NNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQ
Sbjct: 301 NNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQ 360

Query: 361 TLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRT 420
           TLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRT
Sbjct: 361 TLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRT 420

Query: 421 SEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKEAY 480
           SEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKEAY
Sbjct: 421 SEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKEAY 480

Query: 481 IISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQS 540
           IISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQS
Sbjct: 481 IISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQS 540

Query: 541 LKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRM 600
           LKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRM
Sbjct: 541 LKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRM 600

Query: 601 ESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQR 660
           ESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQR
Sbjct: 601 ESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQR 660

Query: 661 LEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEW 720
           LEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEW
Sbjct: 661 LEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEW 720

Query: 721 RNDNGIDHTEMSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSFWREHMARLEH 780
           RNDNGIDHTEMSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSFWREHMARLEH
Sbjct: 721 RNDNGIDHTEMSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSFWREHMARLEH 780

Query: 781 SRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIEPNNINNQELNNSLP 840
           SRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIEPNNINNQELNNSLP
Sbjct: 781 SRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIEPNNINNQELNNSLP 840

Query: 841 YIAENDHGPVIQKENELDTPNVCKTSKIKRNHPCPCGSGKKYKHCHGSYL 890
           YIAENDHGPVIQKENELDTPNVCKTSKIKRNHPCPCGSGKKYKHCHGSYL
Sbjct: 841 YIAENDHGPVIQKENELDTPNVCKTSKIKRNHPCPCGSGKKYKHCHGSYL 890


>gi|254780384|ref|YP_003064797.1| serralysin [Candidatus Liberibacter asiaticus str. psy62]
          Length = 665

 Score = 28.9 bits (63), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 584 YLSLQDDLMRIFGSPRMESFLRKI--GLKEGEAI 615
           YL+  DDL  +FGS R  +    I  G+KEG A+
Sbjct: 572 YLTSYDDLWNVFGSDRSAAAQHYITHGMKEGRAL 605



 Score = 26.2 bits (56), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 17/125 (13%)

Query: 581 SKFYLSLQDDLMRIFGSPRMESFLRKI--GLKEGEAIIHPWINKAIERAQQKVEARN-FE 637
           S  YL   DDL  +FGS R  +    I  G+KEG    +P   KA+E      +  N F 
Sbjct: 401 SYLYLGSYDDLRNVFGSDRGAAARHYITHGVKEGR---NPDAFKALEYIASHEDLINAFA 457

Query: 638 TRKNLLKY--DDVLN----EQRKIIFEQRLEIIDTENILEII-----ADMRHDTLHNIVE 686
              +L++   D   N    E R + F+  L +   +++  +      A  RH   H + E
Sbjct: 458 DAPDLVQVGKDHFSNFGCEEGRFVTFDSYLYLGSYDDLRNVFGSDRGAAARHYITHGVKE 517

Query: 687 KCIPN 691
              P+
Sbjct: 518 GRNPD 522



 Score = 25.8 bits (55), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 12/106 (11%)

Query: 581 SKFYLSLQDDLMRIFGSPRMESFLRKI--GLKEGEAIIHPWINKAIERAQQKVEARN-FE 637
           S  YL   DDL  +FGS R  +    I  G+KEG    +P   KA+E      +  N F 
Sbjct: 485 SYLYLGSYDDLRNVFGSDRGAAARHYITHGVKEGR---NPDAFKALEYIASHEDLINAFA 541

Query: 638 TRKNLLKY--DDVLN----EQRKIIFEQRLEIIDTENILEIIADMR 677
              +L++   D   N    E R I F   L +   +++  +    R
Sbjct: 542 DAPDLVQAGKDHFSNFGYEEGRSITFNPDLYLTSYDDLWNVFGSDR 587


>gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 452

 Score = 28.5 bits (62), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 9/66 (13%)

Query: 635 NFETRKNLLKYDDV-LNEQRKIIFEQRLEIIDT--------ENILEIIADMRHDTLHNIV 685
           N +T K    ++D  LN+  KI  +Q L I+          ENIL + AD+   +  +I 
Sbjct: 46  NIDTLKWWESFNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASIS 105

Query: 686 EKCIPN 691
            + IPN
Sbjct: 106 HRFIPN 111


>gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 478

 Score = 26.9 bits (58), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 7/115 (6%)

Query: 198 RVDMVQRGHNFAIVDEVDSIFIDEARTPL-----IISGPVEDHSDLYRTIDSIIIQLHPS 252
           R D + RG    ++D    I +      L     +I  PV+D   +  +    I Q  PS
Sbjct: 65  RTDGLSRGD--CVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPS 122

Query: 253 DYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSH 307
             E       +    K  + I     G  +   GG    + V I+ LINN  K+H
Sbjct: 123 YTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAH 177


>gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 424

 Score = 26.2 bits (56), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 322 EVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQN 369
           +V + D  TGR M     S G H+A E +++ K       L +I F N
Sbjct: 23  DVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVN 70


>gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score = 25.8 bits (55), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 534 IQEEVQSLK--EKAIVAGGLY-VISTERHESRRIDNQLRGRSGR 574
           I+E  Q L+  EKA+ AGGL  V+S    E R +      RSG+
Sbjct: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGK 268


>gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62]
          Length = 458

 Score = 25.4 bits (54), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 82  LGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPV-YLNALSGKGVHVV 132
           + + P   +++  ++ HK C      G GKT++ +  + Y++    K V V+
Sbjct: 1   MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVI 52


>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1386

 Score = 24.6 bits (52), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 21   LRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLDDLLVPAFAVVREVARR 80
            LR +  KVI      ++IS   DDS+     ++K  +        +  P F    E A  
Sbjct: 1168 LRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGV-------PVSTPVFDGADEEAIN 1220

Query: 81   TLGMRPFDVQLLGGMILHKGCVAE 104
            ++ +R  D+   G  IL+ G   E
Sbjct: 1221 SM-LRMADLDESGQSILYDGLTGE 1243


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.136    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 572,823
Number of Sequences: 1233
Number of extensions: 25064
Number of successful extensions: 87
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 18
length of query: 890
length of database: 328,796
effective HSP length: 82
effective length of query: 808
effective length of database: 227,690
effective search space: 183973520
effective search space used: 183973520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)