HHsearch alignment for GI: 254780328 and conserved domain: COG0451
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].
Probab=100.00 E-value=0 Score=327.68 Aligned_cols=306 Identities=29% Similarity=0.456 Sum_probs=245.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEECHHHCCCCC
Q ss_conf 47999687882779999999987988999926876752130238679842689999999987569889995714401122
Q gi|254780328|r 4 KNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNLRAVFAKYQPASVMHFAGLTNISE 83 (333)
Q Consensus 4 kkIlItG~tGfiGs~l~~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~~~d~ViHlAa~~~~~~ 83 (333)
T Consensus 1 ~~iLVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-d~vih~aa~~~~~~ 79 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAKGVP-DAVIHLAAQSSVPD 79 (314)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCC-CEEEECCCCCCCCC
T ss_conf 96999928877799999999858997999917875431124676434225335678998854588-78998886467753
Q ss_pred CCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 343-1001233012333222112222222222223333222222-22222222-22222222222222333222222222
Q gi|254780328|r 84 SVK-NPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCATYGIP-HNTIITEN-DPQESITPYGYTKYVVERELLQHNKV 160 (333)
Q Consensus 84 ~~~-~p~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vYG~~-~~~~~~E~-~~~~p~~~Yg~sK~~~E~~~~~~~~~ 160 (333)
T Consensus 80 ~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~~~~~p~~~Yg~sK~~~E~~~~~~~~~ 159 (314)
T COG0451 80 SNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARL 159 (314)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 33214788999999999999999986799879997875012788788887865578888767799999999999997663
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 22222222222222222222222233333222222222222222222222222222223221100111110000000111
Q gi|254780328|r 161 NGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDLANAHIMALE 240 (333)
Q Consensus 161 ~~~~~~~~R~~~vyGp~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~i~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~ 240 (333)
T Consensus 160 ~~~~~~ilR~~~vyGp~~~~~~------~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~i~v~D~~~~~~~~~~ 227 (314)
T COG0451 160 YGLPVVILRPFNVYGPGDKPDL------SSGVVSAFIRQLLKG-EPIIVI-----GGDGSQTRDFVYVDDVADALLLALE 227 (314)
T ss_pred CCCCEEEEEECEEECCCCCCCC------CHHHHHHHHHHHHHC-CCCEEE-----CCCCCCEEEEEEHHHHHHHHHHHHH
T ss_conf 3995799984637888987774------207899999998707-885035-----0788622425779999999999973
Q ss_pred HCCCCCCCCEEEEECCC-CEEHHHHHHHHHHHHCCCCC-EEECC--CCCCCCCEEEECHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 00235873103641799-80299999999998378987-59857--8988862221270899998188761079999999
Q gi|254780328|r 241 YLINQGDSIAINLGTGT-GITVKEIISTIQSMYECAFP-ITYES--RRIGDPPSLVADNKKAKKILGWNPKYKLRDIIES 316 (333)
Q Consensus 241 ~~~~~~~~~~~Nig~~~-~~si~~l~~~i~~~~g~~~~-i~~~~--~~~~~~~~~~~d~~k~~~~LGw~p~~~leegi~~ 316 (333)
T Consensus 228 ~~~~~----~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~~~i~~ 303 (314)
T COG0451 228 NPDGG----VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALGWEPKVSLEEGLAD 303 (314)
T ss_pred CCCCC----EEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 88871----89946987776899999999998488754201034322001013432687999997199788998999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999997242
Q gi|254780328|r 317 AWNWHLKYPR 326 (333)
Q Consensus 317 ~i~~~~~~~~ 326 (333)
T Consensus 304 ~~~~~~~~~~ 313 (314)
T COG0451 304 TLEWLLKKLE 313 (314)
T ss_pred HHHHHHHHCC
T ss_conf 9999986313