HHsearch alignment for GI: 254780328 and conserved domain: COG1090
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].
Probab=99.93 E-value=2.1e-26 Score=182.55 Aligned_cols=279 Identities=19% Similarity=0.218 Sum_probs=190.8
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEECHHHCCCCC--
Q ss_conf 999687882779999999987988999926876752130238679842689999999987569889995714401122--
Q gi|254780328|r 6 VLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNLRAVFAKYQPASVMHFAGLTNISE-- 83 (333)
Q Consensus 6 IlItG~tGfiGs~l~~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~~~d~ViHlAa~~~~~~-- 83 (333)
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~------v~~~~~~~~~~~~-~~DavINLAG~~I~~rrW 73 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPN------VTLWEGLADALTL-GIDAVINLAGEPIAERRW 73 (297)
T ss_pred CEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCC------CCCCCHHHHCCCC-CCCEEEECCCCCCCCCCC
T ss_conf 957356650168999999848986999974785023324765------3343012440367-877899888981544657
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf 343100123301233322211222--22222222233332222222222222222222222222222333222222-222
Q gi|254780328|r 84 SVKNPSLFYEINIKGSFNLIATAI--ESNVRRFIFSSTCATYGIPHNTIITENDPQESITPYGYTKYVVERELLQH-NKV 160 (333)
Q Consensus 84 ~~~~p~~~~~~Nv~gt~~ll~~~~--~~~~~~~i~~SS~~vYG~~~~~~~~E~~~~~p~~~Yg~sK~~~E~~~~~~-~~~ 160 (333)
T Consensus 74 t~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~g~~---Fla~lc~~WE~~a~~a~~ 150 (297)
T COG1090 74 TEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESPPGDD---FLAQLCQDWEEEALQAQQ 150 (297)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEECCCCCEEEECCCCCCCC---HHHHHHHHHHHHHHHHHH
T ss_conf 88999999997768999999999852679808985245777558886464157888777---599999999999866640
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 22222222222222222222222233333222222222222222222222222222223221100111110000000111
Q gi|254780328|r 161 NGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDLANAHIMALE 240 (333)
Q Consensus 161 ~~~~~~~~R~~~vyGp~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~i~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~ 240 (333)
T Consensus 151 ~gtRvvllRtGvVLs~~GG------------aL~~m~--------~~fk~glGG~~GsGrQ~~SWIhieD~v~~I~fll~ 210 (297)
T COG1090 151 LGTRVVLLRTGVVLSPDGG------------ALGKML--------PLFKLGLGGKLGSGRQWFSWIHIEDLVNAILFLLE 210 (297)
T ss_pred CCCEEEEEEEEEEECCCCC------------CHHHHC--------CHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHH
T ss_conf 6846999988778617886------------034310--------13552257715898730343329999999999984
Q ss_pred HCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHCCCCCEEECCC-----CCCCCCEEEECH-----HHHHHHHCCCCCCC-
Q ss_conf 0023587310364179980299999999998378987598578-----988862221270-----89999818876107-
Q gi|254780328|r 241 YLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFPITYESR-----RIGDPPSLVADN-----KKAKKILGWNPKYK- 309 (333)
Q Consensus 241 ~~~~~~~~~~~Nig~~~~~si~~l~~~i~~~~g~~~~i~~~~~-----~~~~~~~~~~d~-----~k~~~~LGw~p~~~- 309 (333)
T Consensus 211 ~~~l---sGp~N~taP~PV~~~~F~~al~r~l~RP~~~~v-P~~~~rl~LGe~a~~lL~gQrvlP~kl~~-aGF~F~y~d 285 (297)
T COG1090 211 NEQL---SGPFNLTAPNPVRNKEFAHALGRALHRPAILPV-PSFALRLLLGEMADLLLGGQRVLPKKLEA-AGFQFQYPD 285 (297)
T ss_pred CCCC---CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHH-CCCEEECCC
T ss_conf 7577---775103589867289999999998679953569-38999998522589886360344799987-798166577
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780328|r 310 LRDIIESAWN 319 (333)
Q Consensus 310 leegi~~~i~ 319 (333)
T Consensus 286 l~~AL~~il~ 295 (297)
T COG1090 286 LEEALADILK 295 (297)
T ss_pred HHHHHHHHHH
T ss_conf 9999999972