HHsearch alignment for GI: 254780328 and conserved domain: PRK05086

Probab=96.44  E-value=0.0027  Score=39.62  Aligned_cols=111  Identities=18%  Similarity=0.104  Sum_probs=64.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCCC--CCHHHHCCCCE-EEEECCCHHHHHHHHHHCCCCEEEECHH
Q ss_conf             479996878827799999999879---88999926876--75213023867-9842689999999987569889995714
Q gi|254780328|r    4 KNVLVVGGAGYIGAHTCRVLYERG---FLPIVLDNLSS--GHAEFVLWGPL-EQVDICDYTNLRAVFAKYQPASVMHFAG   77 (333)
Q Consensus         4 kkIlItG~tGfiGs~l~~~L~~~g---~~v~~~d~~~~--~~~~~~~~~~~-~~~Di~d~~~l~~~~~~~~~d~ViHlAa   77 (333)
T Consensus         1 mKV~IiGA~G~VG~s~A~~l~~~~~~~~el~L~Di~~~~~G~alDL~h~~~~~~~~~~~~~~~~~~l~--~adiVvitAG   78 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALE--GADVVLISAG   78 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEECCCHHHHHC--CCCEEEECCC
T ss_conf             98999989986999999999828987774999758888610565654787546653461698678717--9999998789


Q ss_pred             HCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40112234310012330123332221122222222222233
Q gi|254780328|r   78 LTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSS  118 (333)
Q Consensus        78 ~~~~~~~~~~p~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~S  118 (333)
T Consensus        79 ~~rkp-G-~tR~dLl~~Na~I~~~i~~~I~~~~p~aiiivv  117 (312)
T PRK05086         79 VARKP-G-MDRSDLFNVNAGIVKNLVEKVAKTCPKACIGII  117 (312)
T ss_pred             CCCCC-C-CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             89985-8-988999998789999999988720897189995