HHsearch alignment for GI: 254780328 and conserved domain: PRK09009

>PRK09009 C factor cell-cell signaling protein; Provisional.
Probab=99.45  E-value=6.4e-14  Score=105.29  Aligned_cols=211  Identities=14%  Similarity=0.056  Sum_probs=129.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEE--CCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHC-CCCEEEECHHHCC
Q ss_conf             4799968788277999999998798899992--687675213023867984268999999998756-9889995714401
Q gi|254780328|r    4 KNVLVVGGAGYIGAHTCRVLYERGFLPIVLD--NLSSGHAEFVLWGPLEQVDICDYTNLRAVFAKY-QPASVMHFAGLTN   80 (333)
Q Consensus         4 kkIlItG~tGfiGs~l~~~L~~~g~~v~~~d--~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~-~~d~ViHlAa~~~   80 (333)
T Consensus         1 mnVLITGas~GIG~aia~~l~~~~~~~~v~~~~~~~~~-~~~~~~v~~~~~Dvt~~~~i~~~~~~~~~iD~linnAGi~~   79 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLETYPDATVHATYRHHKP-DFRHDNVQWHALDVTDEAEIKQLSEQFTQLDWLINCVGMLH   79 (235)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCC-CCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             97999755639999999999856998099997377654-44579838998747999999999987087789997675244


Q ss_pred             CC-----CCCC--C---CEEEEEECCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             12-----2343--1---0012330123332221122----2222222222333322222222222222222222222222
Q gi|254780328|r   81 IS-----ESVK--N---PSLFYEINIKGSFNLIATA----IESNVRRFIFSSTCATYGIPHNTIITENDPQESITPYGYT  146 (333)
Q Consensus        81 ~~-----~~~~--~---p~~~~~~Nv~gt~~ll~~~----~~~~~~~~i~~SS~~vYG~~~~~~~~E~~~~~p~~~Yg~s  146 (333)
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~l~~~~~~~iv~isS~~g~--i~~------~~~~g~~~Y~aS  151 (235)
T PRK09009         80 TQDKGPEKSLQSLDSDFFLQNITLNTLPSLLLAKHFTPLLKQSESARFAVISAKVGS--ISD------NRLGGWYSYRAS  151 (235)
T ss_pred             CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--CCC------CCCCCCHHHHHH
T ss_conf             677776468677899999999988619999999999999986078764012223415--778------888862366999


Q ss_pred             CCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             223332222222222-----222222222222222222222223333322222222222222222222222222222322
Q gi|254780328|r  147 KYVVERELLQHNKVN-----GLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTC  221 (333)
Q Consensus       147 K~~~E~~~~~~~~~~-----~~~~~~~R~~~vyGp~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~i~i~g~~~~~~dg~~  221 (333)
T Consensus       152 KaAl~~lt~~la~E~~~~~~~i~V~~i~PG~v~T~-------------------m-~~~~~~~~p~--------------  197 (235)
T PRK09009        152 KAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTP-------------------L-SKPFQQNVPK--------------  197 (235)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-------------------C-CCHHHHCCCC--------------
T ss_conf             99999999999999764269968999814865671-------------------2-3067857998--------------


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCE
Q ss_conf             11001111100000001110023587310364179980
Q gi|254780328|r  222 LRDYIHVLDLANAHIMALEYLINQGDSIAINLGTGTGI  259 (333)
Q Consensus       222 ~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~Nig~~~~~  259 (333)
T Consensus       198 -~r~~~PeeiA~~i~~L~s~~s~~~tG~~i~v-dG~~~  233 (235)
T PRK09009        198 -GKLFTPEYVAQCLLGIIANATPAQSGSFLAY-DGEEL  233 (235)
T ss_pred             -CCCCCHHHHHHHHHHHHCCCCCCCCCCEEEE-CCCCC
T ss_conf             -8882999999999999716972369888978-97787