HHsearch alignment for GI: 254780328 and conserved domain: PRK09009
>PRK09009 C factor cell-cell signaling protein; Provisional.
Probab=99.45 E-value=6.4e-14 Score=105.29 Aligned_cols=211 Identities=14% Similarity=0.056 Sum_probs=129.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEE--CCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHC-CCCEEEECHHHCC
Q ss_conf 4799968788277999999998798899992--687675213023867984268999999998756-9889995714401
Q gi|254780328|r 4 KNVLVVGGAGYIGAHTCRVLYERGFLPIVLD--NLSSGHAEFVLWGPLEQVDICDYTNLRAVFAKY-QPASVMHFAGLTN 80 (333)
Q Consensus 4 kkIlItG~tGfiGs~l~~~L~~~g~~v~~~d--~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~-~~d~ViHlAa~~~ 80 (333)
T Consensus 1 mnVLITGas~GIG~aia~~l~~~~~~~~v~~~~~~~~~-~~~~~~v~~~~~Dvt~~~~i~~~~~~~~~iD~linnAGi~~ 79 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLETYPDATVHATYRHHKP-DFRHDNVQWHALDVTDEAEIKQLSEQFTQLDWLINCVGMLH 79 (235)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCC-CCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 97999755639999999999856998099997377654-44579838998747999999999987087789997675244
Q ss_pred CC-----CCCC--C---CEEEEEECCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12-----2343--1---0012330123332221122----2222222222333322222222222222222222222222
Q gi|254780328|r 81 IS-----ESVK--N---PSLFYEINIKGSFNLIATA----IESNVRRFIFSSTCATYGIPHNTIITENDPQESITPYGYT 146 (333)
Q Consensus 81 ~~-----~~~~--~---p~~~~~~Nv~gt~~ll~~~----~~~~~~~~i~~SS~~vYG~~~~~~~~E~~~~~p~~~Yg~s 146 (333)
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~l~~~~~~~iv~isS~~g~--i~~------~~~~g~~~Y~aS 151 (235)
T PRK09009 80 TQDKGPEKSLQSLDSDFFLQNITLNTLPSLLLAKHFTPLLKQSESARFAVISAKVGS--ISD------NRLGGWYSYRAS 151 (235)
T ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--CCC------CCCCCCHHHHHH
T ss_conf 677776468677899999999988619999999999999986078764012223415--778------888862366999
Q ss_pred CCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 223332222222222-----222222222222222222222223333322222222222222222222222222222322
Q gi|254780328|r 147 KYVVERELLQHNKVN-----GLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTC 221 (333)
Q Consensus 147 K~~~E~~~~~~~~~~-----~~~~~~~R~~~vyGp~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~i~i~g~~~~~~dg~~ 221 (333)
T Consensus 152 KaAl~~lt~~la~E~~~~~~~i~V~~i~PG~v~T~-------------------m-~~~~~~~~p~-------------- 197 (235)
T PRK09009 152 KAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTP-------------------L-SKPFQQNVPK-------------- 197 (235)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-------------------C-CCHHHHCCCC--------------
T ss_conf 99999999999999764269968999814865671-------------------2-3067857998--------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCE
Q ss_conf 11001111100000001110023587310364179980
Q gi|254780328|r 222 LRDYIHVLDLANAHIMALEYLINQGDSIAINLGTGTGI 259 (333)
Q Consensus 222 ~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~Nig~~~~~ 259 (333)
T Consensus 198 -~r~~~PeeiA~~i~~L~s~~s~~~tG~~i~v-dG~~~ 233 (235)
T PRK09009 198 -GKLFTPEYVAQCLLGIIANATPAQSGSFLAY-DGEEL 233 (235)
T ss_pred -CCCCCHHHHHHHHHHHHCCCCCCCCCCEEEE-CCCCC
T ss_conf -8882999999999999716972369888978-97787