HHsearch alignment for GI: 254780328 and conserved domain: TIGR00036
>TIGR00036 dapB dihydrodipicolinate reductase; InterPro: IPR011770 Dihydrodipicolinate reductase is an enzyme found in bacteria and higher plants which is involved in the biosynthesis of diaminopimelic acid, a component of bacterial cell walls, and the essential amino acid L-lysine. It catalyses the the reduced pyridine nucleotide-dependent reduction of the alpha,beta-unsaturated cyclic imine, dihydrodipicolinate, to generate tetrahydrodipicolinate as shown below : 2,3-dihydrodipicolinate + NAD(P)H = 2,3,4,5-tetrahydrodipicolinate + NAD(P)(+) As this enzyme is not found in mammals it is a potential target for the development of novel antibacterial and herbicidal compounds. The structures of the Escherichia coli (P04036 from SWISSPROT) and Mycobacterium tuberculosis (P72024 from SWISSPROT) enzymes have been determined , . The enzyme is a homotetramer where each monomer is composed of two domains, an N-terminal NAD(P)H-binding domain which forms a Rossman fold, and a C-terminal substrate-binding domain that forms an open, mixed alpha-beta sandwich.Tetramerisation occurs exclusively through interactions between C-terminal domain residues. Both enzymes show relatively little preference for either NADH or NADPH as cofactor. Conformational changes upon substrate binding bring the cofactor and substrate into close proximity and allow catalysis to occur. ; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0005737 cytoplasm.
Probab=94.61 E-value=0.19 Score=28.24 Aligned_cols=121 Identities=23% Similarity=0.314 Sum_probs=68.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHH--CCCEEEE-EECCCCCCHHH----HCCCCEEEEECCCHHHHHHHHH--HCCCCEEEE
Q ss_conf 4799968788277999999998--7988999-92687675213----0238679842689999999987--569889995
Q gi|254780328|r 4 KNVLVVGGAGYIGAHTCRVLYE--RGFLPIV-LDNLSSGHAEF----VLWGPLEQVDICDYTNLRAVFA--KYQPASVMH 74 (333)
Q Consensus 4 kkIlItG~tGfiGs~l~~~L~~--~g~~v~~-~d~~~~~~~~~----~~~~~~~~~Di~d~~~l~~~~~--~~~~d~ViH 74 (333)
T Consensus 2 ikvav~GA~GRMG~~~ik~~~~~ye~l~Lv~A~~~~~~~~~G~D~GEl~g~g~~gv~v~~~~~~~~~l~~~~~~~DVliD 81 (281)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAVLQAYEGLKLVAAFERHGSSLQGTDIGELAGIGKVGVPVTDDLEAVLVLAFTETKPDVLID 81 (281)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 83588478873469999999974898167888861688856654202422554784100057889998740236864787
Q ss_pred CHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 71440112234310012330123332221122222222222233332222222222222222222222222222333222
Q gi|254780328|r 75 FAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCATYGIPHNTIITENDPQESITPYGYTKYVVEREL 154 (333)
Q Consensus 75 lAa~~~~~~~~~~p~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vYG~~~~~~~~E~~~~~p~~~Yg~sK~~~E~~~ 154 (333)
T Consensus 82 FT~---p---------------~g~~~~~~~a~~~Gv~-~V~-GT---------TGf~e~~~~~---------------~ 117 (281)
T TIGR00036 82 FTT---P---------------EGVVENVKIALENGVR-LVV-GT---------TGFSEEDLQE---------------L 117 (281)
T ss_pred CCC---C---------------HHHHHHHHHHHHCCCE-EEE-CC---------CCCCHHHHHH---------------H
T ss_conf 386---0---------------5678999999966885-577-16---------6899899999---------------9
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 22222222222222
Q gi|254780328|r 155 LQHNKVNGLRSVVL 168 (333)
Q Consensus 155 ~~~~~~~~~~~~~~ 168 (333)
T Consensus 118 ~~~a~~~~~~~v~A 131 (281)
T TIGR00036 118 RDLAEKKGVAAVIA 131 (281)
T ss_pred HHHHHHCCCCEEEE
T ss_conf 99998649978984