HHsearch alignment for GI: 254780328 and conserved domain: TIGR01214
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=100.00 E-value=2.6e-41 Score=274.64 Aligned_cols=290 Identities=19% Similarity=0.234 Sum_probs=237.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEECHHHCCCCCC
Q ss_conf 79996878827799999999879889999268767521302386798426899999999875698899957144011223
Q gi|254780328|r 5 NVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNLRAVFAKYQPASVMHFAGLTNISES 84 (333)
Q Consensus 5 kIlItG~tGfiGs~l~~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~~~d~ViHlAa~~~~~~~ 84 (333)
T Consensus 1 rilitGa~GQlG~~L~~~l~~~g~~~~~~~~~----~~~~~~~~~~~~Dl~dP~~l~~~~r~~~Pd~vvntAAYT~VD~A 76 (317)
T TIGR01214 1 RILITGANGQLGRELVQQLSKPGRVVVALTRS----TRLKLAARWSQLDLTDPEALEELLRAIRPDAVVNTAAYTDVDGA 76 (317)
T ss_pred CEEEECCCCHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCHHCCCCCC
T ss_conf 97887387567999999707888278643687----77611336544062246889999985287537623011010000
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43100123301233322211222222222222333322222----22222222222222222222222333222222222
Q gi|254780328|r 85 VKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCATYGI----PHNTIITENDPQESITPYGYTKYVVERELLQHNKV 160 (333)
Q Consensus 85 ~~~p~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vYG~----~~~~~~~E~~~~~p~~~Yg~sK~~~E~~~~~~~~~ 160 (333)
T Consensus 77 E~~~~~AyavNa~A~~~lA~~A~~~Ga-~~vh~STDYVFDGdfGG~~~~PY~e~D~~nPlnvYG~SK~~GE~a~~~~~~~ 155 (317)
T TIGR01214 77 ESDPEKAYAVNALAPQNLARAAARVGA-RLVHISTDYVFDGDFGGEGKRPYREDDETNPLNVYGQSKLAGEQAVRAAGPD 155 (317)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCC-EEEEEEECEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 377778765740789999999986691-5999863423447557888668876468798431211156899999983799
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 2222222222222222222222223333322222222222-222222222222222222322110011111000000011
Q gi|254780328|r 161 NGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTA-MGYQNSFKVFGQDYATRDGTCLRDYIHVLDLANAHIMAL 239 (333)
Q Consensus 161 ~~~~~~~~R~~~vyGp~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~i~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~ 239 (333)
T Consensus 156 e--~~lIvRTsWlY~~~g~--------~g~NF~~tMlrLaG~~-~~~l~vV~DQ~----G----sPTy~~dLA~~~~~ll 216 (317)
T TIGR01214 156 E--NALIVRTSWLYGAGGG--------SGRNFVKTMLRLAGKE-REELRVVDDQI----G----SPTYAKDLARAIAALL 216 (317)
T ss_pred C--CEEEEEEEEEECCCCC--------CCCCHHHHHHHHCCCC-CCCEEEEECCC----C----CHHHHHHHHHHHHHHH
T ss_conf 8--5788985213448998--------8421799999853789-98403785576----8----7358999999999999
Q ss_pred HHC-----CCCCCCCEEEEECCCCEEHHHHHHHHHHHHCCCC---CE--EECCC-------CCCCCCEEEECHHHHHHHH
Q ss_conf 100-----2358731036417998029999999999837898---75--98578-------9888622212708999981
Q gi|254780328|r 240 EYL-----INQGDSIAINLGTGTGITVKEIISTIQSMYECAF---PI--TYESR-------RIGDPPSLVADNKKAKKIL 302 (333)
Q Consensus 240 ~~~-----~~~~~~~~~Nig~~~~~si~~l~~~i~~~~g~~~---~i--~~~~~-------~~~~~~~~~~d~~k~~~~L 302 (333)
T Consensus 217 ~~~~Wdv~~~a~~~GvYH~~~~G~~SWyeFA~~If~~~~~~g~~~~~~~~v~Pis~~~yp~pA~RPayS~Ld~~~~~~~~ 296 (317)
T TIGR01214 217 ERLNWDVEDAARARGVYHLANSGQVSWYEFAQAIFEVAGECGLLLKVPEEVKPISSKEYPTPARRPAYSVLDNTKLVKTL 296 (317)
T ss_pred HHHCCCHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEECHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 76133400101367346775054313688999999999854710487200010113207789988643044568999960
Q ss_pred C---CCCCCCHHHHHHHHHH
Q ss_conf 8---8761079999999999
Q gi|254780328|r 303 G---WNPKYKLRDIIESAWN 319 (333)
Q Consensus 303 G---w~p~~~leegi~~~i~ 319 (333)
T Consensus 297 g~P~~~lp-~Wr~al~~~l~ 315 (317)
T TIGR01214 297 GKPLLVLP-DWREALRAVLK 315 (317)
T ss_pred CCCCCCCC-CHHHHHHHHHH
T ss_conf 86667998-78999999974