HHsearch alignment for GI: 254780328 and conserved domain: cd00755
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.86 E-value=0.092 Score=30.12 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=61.4
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC--CCCCCHHHHCCCCEEEEECC--CHHHHHHHHHHCCCCEEEEC
Q ss_conf 9644799968788277999999998798-8999926--87675213023867984268--99999999875698899957
Q gi|254780328|r 1 MENKNVLVVGGAGYIGAHTCRVLYERGF-LPIVLDN--LSSGHAEFVLWGPLEQVDIC--DYTNLRAVFAKYQPASVMHF 75 (333)
Q Consensus 1 m~~kkIlItG~tGfiGs~l~~~L~~~g~-~v~~~d~--~~~~~~~~~~~~~~~~~Di~--d~~~l~~~~~~~~~d~ViHl 75 (333)
T Consensus 9 l~~s~V~v~G~GG-vGs~~a~~LarsGVG~l~lvD~D~v~~SN-LnR-Q~~a~~~~iG~~K~~~~~~rl~~iNP~~~v~~ 85 (231)
T cd00755 9 LRNAHVAVVGLGG-VGSWAAEALARSGVGKLTLIDFDVVCVSN-LNR-QIHALLSTVGKPKVEVMAERIRDINPECEVDA 85 (231)
T ss_pred HHCCCEEEECCCH-HHHHHHHHHHHCCCCEEEEEECCEECCCC-HHH-HHCCCHHHCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 8549789988863-68999999998099759997199904544-443-30165633699728999999998799988998
Q ss_pred HHHCCCCCCC-----CCCEEEE--EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1440112234-----3100123--30123332221122222222222233332222
Q gi|254780328|r 76 AGLTNISESV-----KNPSLFY--EINIKGSFNLIATAIESNVRRFIFSSTCATYG 124 (333)
Q Consensus 76 Aa~~~~~~~~-----~~p~~~~--~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vYG 124 (333)
T Consensus 86 ~~~~~~~~n~~~ll~~~~D~VvDaiD~~~~K~~l~~~c~~~~ip-lI--ss~Gag~ 138 (231)
T cd00755 86 VEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIP-VI--SSMGAGG 138 (231)
T ss_pred EHHHCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCE-EE--EECCCCC
T ss_conf 62515998999984547777853442487799999999982990-89--9867346