HHsearch alignment for GI: 254780328 and conserved domain: cd01336
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.26 E-value=0.0032 Score=39.12 Aligned_cols=166 Identities=14% Similarity=0.056 Sum_probs=84.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHC---CC----EEEEEECCCCCC-----HHHHCC--CCEEEEECCCHHHHHHHHHHCCC
Q ss_conf 47999687882779999999987---98----899992687675-----213023--86798426899999999875698
Q gi|254780328|r 4 KNVLVVGGAGYIGAHTCRVLYER---GF----LPIVLDNLSSGH-----AEFVLW--GPLEQVDICDYTNLRAVFAKYQP 69 (333)
Q Consensus 4 kkIlItG~tGfiGs~l~~~L~~~---g~----~v~~~d~~~~~~-----~~~~~~--~~~~~~Di~d~~~l~~~~~~~~~ 69 (333)
T Consensus 3 ~kV~VtGAaG~Ig~~l~~~la~g~~~g~~~~i~L~L~Di~~~~~~l~Gv~mel~d~a~p~l-~~i~~~~~~~~a~~~--a 79 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLL-KSVVATTDPEEAFKD--V 79 (325)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEHHHCCCCCC-CCEEECCCHHHHHCC--C
T ss_conf 1999988871889999999975885689970599996677867765526745743786455-873522887898368--8
Q ss_pred CEEEECHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 89995714401122343100123301233322211222222-22-222233332222222222222222-2222222222
Q gi|254780328|r 70 ASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESN-VR-RFIFSSTCATYGIPHNTIITENDP-QESITPYGYT 146 (333)
Q Consensus 70 d~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~~ll~~~~~~~-~~-~~i~~SS~~vYG~~~~~~~~E~~~-~~p~~~Yg~s 146 (333)
T Consensus 80 Dvvii~ag~prkp-Gmt-R~DLl~~Na~I~k~~~~~I~~~a~p~~~viVv~NPvn---~~~~i~~~~a~~~p~~~i~~~t 154 (325)
T cd01336 80 DVAILVGAMPRKE-GME-RKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPAN---TNALILLKYAPSIPKENFTALT 154 (325)
T ss_pred CEEEEECCCCCCC-CCC-HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHH---HHHHHHHHHCCCCCHHHEEEEE
T ss_conf 7899948877999-982-7999998999999999999986145819999279358---8999999977999668499842
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2233322222222222222222222222222
Q gi|254780328|r 147 KYVVERELLQHNKVNGLRSVVLRYFNAAGAT 177 (333)
Q Consensus 147 K~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~ 177 (333)
T Consensus 155 ~LD~~R~~~~lA~kl~v~~~~V~~~iIwG~H 185 (325)
T cd01336 155 RLDHNRAKSQIALKLGVPVSDVKNVIIWGNH 185 (325)
T ss_pred HHHHHHHHHHHHHHHCCCHHHEEEEEEEECC
T ss_conf 8999999999999859896784667999879