HHsearch alignment for GI: 254780328 and conserved domain: cd03785
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=91.70 E-value=0.97 Score=23.81 Aligned_cols=75 Identities=25% Similarity=0.412 Sum_probs=40.4
Q ss_pred EEEEECCCC-HH--HHHHHHHHHHCCCEEEEEECCCCCCH-HHH--CCCCEEEEECC------CHH-------------H
Q ss_conf 799968788-27--79999999987988999926876752-130--23867984268------999-------------9
Q gi|254780328|r 5 NVLVVGGAG-YI--GAHTCRVLYERGFLPIVLDNLSSGHA-EFV--LWGPLEQVDIC------DYT-------------N 59 (333)
Q Consensus 5 kIlItG~tG-fi--Gs~l~~~L~~~g~~v~~~d~~~~~~~-~~~--~~~~~~~~Di~------d~~-------------~ 59 (333)
T Consensus 2 i~i~~GGTGGHi~Palala~~L~~~g~~V~~i~~~-~g~e~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T cd03785 2 ILIAGGGTGGHIFPALALAEELRERGAEVLFLGTK-RGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGVLQ 80 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECC-CHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89994785899999999999999787989999878-36864234413994899768887888739999999999999999
Q ss_pred HHHHHHHCCCCEEEECHHHCC
Q ss_conf 999987569889995714401
Q gi|254780328|r 60 LRAVFAKYQPASVMHFAGLTN 80 (333)
Q Consensus 60 l~~~~~~~~~d~ViHlAa~~~ 80 (333)
T Consensus 81 ~~~~l~~~kPd~vi~~GGY~s 101 (350)
T cd03785 81 ARKILKKFKPDVVVGFGGYVS 101 (350)
T ss_pred HHHHHHHCCCCEEEECCCCHH
T ss_conf 999999649999998898103