HHsearch alignment for GI: 254780328 and conserved domain: cd05290
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.29 E-value=0.01 Score=36.09 Aligned_cols=161 Identities=13% Similarity=0.074 Sum_probs=86.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCC---CHHHHC------CCCEEEEECCCHHHHHHHHHHCCCCEEE
Q ss_conf 799968788277999999998798--89999268767---521302------3867984268999999998756988999
Q gi|254780328|r 5 NVLVVGGAGYIGAHTCRVLYERGF--LPIVLDNLSSG---HAEFVL------WGPLEQVDICDYTNLRAVFAKYQPASVM 73 (333)
Q Consensus 5 kIlItG~tGfiGs~l~~~L~~~g~--~v~~~d~~~~~---~~~~~~------~~~~~~~Di~d~~~l~~~~~~~~~d~Vi 73 (333)
T Consensus 1 KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~Di~~~~a~g~a~Dl~h~~~~~~~~~~~~~~~~y~~~~------~aDiVV 73 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCA------DADIIV 73 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCHHHHC------CCCEEE
T ss_conf 9899996-989999999998569988799992889823799998761203589986586679989946------999999
Q ss_pred ECHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCC-CCCC
Q ss_conf 571440112234310012330123332221122222222222233332222222222---222222222222222-2223
Q gi|254780328|r 74 HFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCATYGIPHNTI---ITENDPQESITPYGY-TKYV 149 (333)
Q Consensus 74 HlAa~~~~~~~~~~p~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vYG~~~~~~---~~E~~~~~p~~~Yg~-sK~~ 149 (333)
T Consensus 74 itaG~~~kpg~t~~R~dL~~~N~~I~~~i~~~i~~~~p~~i~ivvs-----NPvDvmt~~~~k~sg~p~~rViG~Gt~LD 148 (307)
T cd05290 74 ITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT-----NPLDIAVYIAATEFDYPANKVIGTGTMLD 148 (307)
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC-----CCHHHHHHHHHHHHCCCCCCEEECCCHHH
T ss_conf 8677765899983588888857899999999986139974999847-----93889999999984899357872022177
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33222222222222222222222222222
Q gi|254780328|r 150 VERELLQHNKVNGLRSVVLRYFNAAGATL 178 (333)
Q Consensus 150 ~E~~~~~~~~~~~~~~~~~R~~~vyGp~~ 178 (333)
T Consensus 149 saR~r~~la~~l~v~~~~V~a-~VlGeHG 176 (307)
T cd05290 149 TARLRRIVADKYGVDPKNVTG-YVLGEHG 176 (307)
T ss_pred HHHHHHHHHHHHCCCCCCCEE-EEEECCC
T ss_conf 899999999984999343320-5874479