HHsearch alignment for GI: 254780328 and conserved domain: pfam01488
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=96.96 E-value=0.0019 Score=40.49 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=46.7
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHH-CCCCEEEEECCCHHHHHHHHHHCCCCEEEECHH
Q ss_conf 96447999687882779999999987988999926876752130-238679842689999999987569889995714
Q gi|254780328|r 1 MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFV-LWGPLEQVDICDYTNLRAVFAKYQPASVMHFAG 77 (333)
Q Consensus 1 m~~kkIlItG~tGfiGs~l~~~L~~~g~~v~~~d~~~~~~~~~~-~~~~~~~~Di~d~~~l~~~~~~~~~d~ViHlAa 77 (333)
T Consensus 10 l~~~~vlVIGa-G~~~~~~~~~L~~~g~~~i~v~nRt~~ka~~la~~~~~~~~~~~~~~~l~~~l~~~--DivI~aT~ 84 (134)
T pfam01488 10 LKGKKVLLIGA-GEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFGGEEVEALPLDELEELLAEA--DIVISATS 84 (134)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHC--CEEEEECC
T ss_conf 14898999996-09999999999975998899954757899999998499725898513544136319--99999259