RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780328|ref|YP_003064741.1| UDP-glucose 4-epimerase
[Candidatus Liberibacter asiaticus str. psy62]
(333 letters)
>gnl|CDD|130247 TIGR01179, galE, UDP-glucose-4-epimerase. This enzyme
interconverts UDP-glucose and UDP-galactose. A set of
related proteins, some of which are tentatively
identified as UDP-glucose-4-epimerase in Thermotoga
maritima, Bacillus halodurans, and several archaea, but
deeply branched from this set and lacking experimental
evidence, are excluded from this model and described
separately.
Length = 328
Score = 372 bits (957), Expect = e-104
Identities = 146/325 (44%), Positives = 201/325 (61%), Gaps = 8/325 (2%)
Query: 5 NVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWG------PLEQVDICDYT 58
+LV GGAGYIG+HT R L E G +VLDNLS+G E + G + D+ D
Sbjct: 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRE 60
Query: 59 NLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSS 118
L +F +++ +V+HFAGL + ESV++P +Y N+ + NL+ ++ V++FIFSS
Sbjct: 61 LLDRLFEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSS 120
Query: 119 TCATYGIPHNTIITENDPQESITPYGYTKYVVERELLQHNKVN-GLRSVVLRYFNAAGAT 177
+ A YG P + I+E+ P I PYG +K + ER L +K + GL V+LRYFN AGA
Sbjct: 121 SAAVYGEPSSIPISEDSPLGPINPYGRSKLMSERILRDLSKADPGLSYVILRYFNVAGAD 180
Query: 178 LDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDLANAHIM 237
+ IGE TH+IP A + A+G ++ +FG DY T DGTC+RDYIHV+DLA+AH+
Sbjct: 181 PEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDLADAHLA 240
Query: 238 ALEYLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFPITYESRRIGDPPSLVADNKK 297
ALEYL+N G+S NLG G G +V E+I + + FP+ RR GDP SLVAD K
Sbjct: 241 ALEYLLNGGESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPRRPGDPASLVADASK 300
Query: 298 AKKILGWNPKY-KLRDIIESAWNWH 321
++ LGW PKY L II++AW W
Sbjct: 301 IRRELGWQPKYTDLEIIIKTAWRWE 325
>gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase.
Length = 352
Score = 257 bits (660), Expect = 2e-69
Identities = 125/343 (36%), Positives = 181/343 (52%), Gaps = 21/343 (6%)
Query: 1 MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFV-----LWGPL------ 49
+ + +LV GGAGYIG+HT L G+ +V+DNL + E + L G L
Sbjct: 3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVF 62
Query: 50 EQVDICDYTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIES 109
+VD+ D L VFA + +V+HFAGL + ESV P L+Y+ N+ G+ NL+ +
Sbjct: 63 HKVDLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKH 122
Query: 110 NVRRFIFSSTCATYGIPHNTIITENDPQESITPYGYTKYVVEREL--LQHNKVNGLRSVV 167
++ +FSS+ YG P TE P + PYG TK +E + + + ++
Sbjct: 123 GCKKLVFSSSATVYGQPEEVPCTEEFPLSATNPYGRTKLFIEEICRDIHASDPE-WKIIL 181
Query: 168 LRYFNAAGATLDSIIGEWHNPE---THVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRD 224
LRYFN GA IGE +P+ +++P + A+G + VFG DY T+DGT +RD
Sbjct: 182 LRYFNPVGAHPSGRIGE--DPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGTGVRD 239
Query: 225 YIHVLDLANAHIMALEYLINQGDS--IAINLGTGTGITVKEIISTIQSMYECAFPITYES 282
YIHV+DLA+ HI AL L D A NLGTG G +V E+++ + P+
Sbjct: 240 YIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAP 299
Query: 283 RRIGDPPSLVADNKKAKKILGWNPKYKLRDIIESAWNWHLKYP 325
RR GD + A +KA+K LGW KY + ++ WNW K P
Sbjct: 300 RRPGDAEEVYASTEKAEKELGWKAKYGIDEMCRDQWNWASKNP 342
>gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional.
Length = 338
Score = 211 bits (540), Expect = 1e-55
Identities = 119/339 (35%), Positives = 179/339 (52%), Gaps = 25/339 (7%)
Query: 5 NVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFV-----LWGP---LEQVDICD 56
VLV GG+GYIG+HTC L + G ++LDNL + + L G + DI +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 57 YTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIF 116
L + + +V+HFAGL + ESV+ P +Y+ N+ G+ LI+ +NV+ IF
Sbjct: 62 EALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIF 121
Query: 117 SSTCATYG----IPHNTIITENDPQESITPYGYTKYVVERELLQHNKVNGLRSVV-LRYF 171
SS+ YG IP+ PQ +PYG +K +VE+ L K S+ LRYF
Sbjct: 122 SSSATVYGDQPKIPYVESFPTGTPQ---SPYGKSKLMVEQILTDLQKAQPDWSIALLRYF 178
Query: 172 NAAGATLDSIIGEWHNPE---THVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHV 228
N GA +GE +P+ +++P + A+G ++S +FG DY T DGT +RDYIHV
Sbjct: 179 NPVGAHPSGDMGE--DPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236
Query: 229 LDLANAHIMALEYLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFPITYE--SRRIG 286
+DLA+ H+ A+E L N+ NLG G G +V ++++ C P+ Y RR G
Sbjct: 237 MDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSK--ACGKPVNYHFAPRREG 294
Query: 287 DPPSLVADNKKAKKILGWNPKYKLRDIIESAWNWHLKYP 325
D P+ AD KA + L W L ++ + W+W ++P
Sbjct: 295 DLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHP 333
>gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase. This
protein is related to UDP-glucose 4-epimerase (GalE) and
likewise has an NAD cofactor.
Length = 317
Score = 114 bits (288), Expect = 3e-26
Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 35/333 (10%)
Query: 5 NVLVVGGAGYIGAHTCR-VLYERG-FLPIVLDNLS-SGHAEFV--LWGP----LEQVDIC 55
+LV GGAG+IG++ R +L E IVLD L+ +G+ E + L + DI
Sbjct: 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIG 60
Query: 56 DYTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVR-RF 114
D + +F ++QP +V+HFA +++ S+ P+ F E N+ G++ L+ + RF
Sbjct: 61 DRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRF 120
Query: 115 IFSSTCATYGIPHNT-IITENDPQESITPYGYTKYVVERELLQHNKVNGLRSVVLRYFNA 173
ST YG TE P +PY +K + + +++ GL +++ R N
Sbjct: 121 HHISTDEVYGDLEKGDAFTETTPLAPSSPYSASKAASDHLVRAYHRTYGLPALITRCSNN 180
Query: 174 AGATLDSIIGEWHNPETHVIPLAIKTA-MGYQNSFKVFGQDYATRDGTCLRDYIHVLDLA 232
G + PE +IPL I A G V+G DG +RD+++V D
Sbjct: 181 YGP--------YQFPEK-LIPLMITNALAG--KPLPVYG------DGQQVRDWLYVED-- 221
Query: 233 NAHIMALEYLINQGDSIAI-NLGTGTGITVKEIISTI-QSMYECAFPITYESRRIGDPPS 290
H A+ ++ +G N+G G T E++ TI + + + IT+ R G
Sbjct: 222 --HCRAIYLVLEKGRVGETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRR 279
Query: 291 LVADNKKAKKILGWNPKYKLRDIIESAWNWHLK 323
D K K+ LGW PKY + + W+L
Sbjct: 280 YAIDASKIKRELGWAPKYTFEEGLRKTVQWYLD 312
>gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional.
Length = 355
Score = 98.2 bits (244), Expect = 2e-21
Identities = 92/355 (25%), Positives = 147/355 (41%), Gaps = 60/355 (16%)
Query: 4 KNVLVVGGAGYIGAHTCR-VLYERGFLPIVLDNLS-----------SGHAEFVLWGPLEQ 51
+ +L+ GGAG+IG+ R ++ E +V+D L+ + F E+
Sbjct: 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAF----EK 57
Query: 52 VDICDYTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATA----- 106
VDICD L VF ++QP VMH A +++ S+ P+ F E NI G++ L+ A
Sbjct: 58 VDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWN 117
Query: 107 ----IESNVRRFIFSSTCATYGIPHNT--IITENDPQESITPYGYTKYVVERELLQHNKV 160
+ + RF ST YG H+T TE P +PY +K + + +
Sbjct: 118 ALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRT 177
Query: 161 NGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGT 220
GL +++ N G +H PE +IPL I A+ + V+G +G
Sbjct: 178 YGLPTLITNCSNN--------YGPYHFPEK-LIPLMILNALAGK-PLPVYG------NGQ 221
Query: 221 CLRDYIHVLDLANAHIMALEYLINQGD-SIAINLGTGTGITVKEIISTIQSMYECAFP-- 277
+RD+++V D H AL + G N+G +++ TI + E P
Sbjct: 222 QIRDWLYVED----HARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNK 277
Query: 278 ----------ITYESRRIGDPPSLVADNKKAKKILGWNPKYKLRDIIESAWNWHL 322
IT+ + R G D K + LGW P+ + W+L
Sbjct: 278 PQGVAHYRDLITFVADRPGHDLRYAIDASKIARELGWLPQETFESGMRKTVQWYL 332
>gnl|CDD|178326 PLN02725, PLN02725,
GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase.
Length = 306
Score = 96.3 bits (240), Expect = 9e-21
Identities = 77/328 (23%), Positives = 148/328 (45%), Gaps = 40/328 (12%)
Query: 7 LVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNLRAVFAK 66
V G G +G+ R L GF +VL H E +D+ ++ A FAK
Sbjct: 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRT----HKE---------LDLTRQADVEAFFAK 47
Query: 67 YQPASVMHFAG-LTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIF-SSTC---- 120
+P V+ A + I ++ P+ F N++ N+I A V++ +F S+C
Sbjct: 48 EKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPK 107
Query: 121 -ATYGIPHNTIITENDPQESITPYGYTKYVVERELLQHNKVNGLRSVVLRY-FNAAGATL 178
A IP ++T P+ + Y K K+ ++ ++Y ++A
Sbjct: 108 FAPQPIPETALLT-GPPEPTNEWYAIAKIAGI-------KMC--QAYRIQYGWDAISGMP 157
Query: 179 DSIIGEWHN--PE-THVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDLANAH 235
++ G N PE +HVIP I+ ++ + G+ LR+++HV DLA+A
Sbjct: 158 TNLYGPHDNFHPENSHVIPALIRR--FHEAKANGAPEVVVWGSGSPLREFLHVDDLADAV 215
Query: 236 IMALEYLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFPITYESRRIGDPPSLVADN 295
+ + + +N+G+G +T+KE+ ++ + + +++ + P + D+
Sbjct: 216 VFLMR---RYSGAEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTSKPDGTPRKLMDS 272
Query: 296 KKAKKILGWNPKYKLRDIIESAWNWHLK 323
K + LGW+PK+ L+D ++ + W+L+
Sbjct: 273 SKLRS-LGWDPKFSLKDGLQETYKWYLE 299
>gnl|CDD|182230 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional.
Length = 352
Score = 86.4 bits (214), Expect = 9e-18
Identities = 92/353 (26%), Positives = 148/353 (41%), Gaps = 56/353 (15%)
Query: 6 VLVVGGAGYIGAHTCR-VLYERGFLPIVLDNLS-SGHAEFVLWGP------LEQVDICDY 57
+LV GGAG+IG+ R ++ + +D L+ +G+ E + E DICD
Sbjct: 3 ILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDR 62
Query: 58 TNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIE--------- 108
L +FA++QP +VMH A +++ S+ P+ F E NI G++ L+ A
Sbjct: 63 AELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDK 122
Query: 109 SNVRRFIFSSTCATYG-IPHN---------TIITENDPQESITPYGYTKYVVERELLQHN 158
N RF ST YG +PH + TE +PY +K + +
Sbjct: 123 KNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETTAYAPSSPYSASKASSDHLVRAWL 182
Query: 159 KVNGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRD 218
+ GL ++V N G +H PE +IPL I A+ + ++G+
Sbjct: 183 RTYGLPTIVTNCSNN--------YGPYHFPEK-LIPLVILNALEGK-PLPIYGK------ 226
Query: 219 GTCLRDYIHVLDLANAHIMALEYLINQGD-SIAINLGTGTGITVKEIISTIQSMYECAFP 277
G +RD+++V D H AL ++ +G N+G +++ TI + + P
Sbjct: 227 GDQIRDWLYVED----HARALYKVVTEGKAGETYNIGGHNEKKNLDVVLTICDLLDEIVP 282
Query: 278 --------ITYESRRIGDPPSLVADNKKAKKILGWNPKYKLRDIIESAWNWHL 322
ITY + R G D K + LGW P+ I W+L
Sbjct: 283 KATSYREQITYVADRPGHDRRYAIDASKISRELGWKPQETFESGIRKTVEWYL 335
>gnl|CDD|162758 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase.
This family consists of examples of
ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme
involved in biosynthesis of the inner core of
lipopolysaccharide (LPS) for Gram-negative bacteria.
This enzyme is homologous to UDP-glucose 4-epimerase
(TIGR01179) and belongs to the NAD dependent
epimerase/dehydratase family (pfam01370).
Length = 314
Score = 77.3 bits (191), Expect = 5e-15
Identities = 76/290 (26%), Positives = 125/290 (43%), Gaps = 38/290 (13%)
Query: 6 VLVVGGAGYIGAHTCRVLYERGFLPI-VLDNLSSGHAEFVLWGPLEQVDICDYTN----- 59
++V GGAG+IG++ + L ERG I V+DNL GH + L + I DY +
Sbjct: 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGHK----FLNLADLVIADYIDKEDFL 56
Query: 60 --LRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFS 117
L A + ++ H ++ +E+ + E N + S L+ E + FI++
Sbjct: 57 DRLEKG-AFGKIEAIFHQGACSDTTET--DGEYMMENNYQYSKRLLDWCAEKGIP-FIYA 112
Query: 118 STCATYGIPHNTIITENDPQESITPYGYTK-----YVVERELLQHN--KVNGLRSVVLRY 170
S+ ATYG + + + YGY+K YV R L + +V G LRY
Sbjct: 113 SSAATYGDGEAGFREGRELERPLNVYGYSKFLFDQYVRRRVLPEALSAQVVG-----LRY 167
Query: 171 FNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLD 230
FN G E+H + + + + + K+F +DG LRD+++V D
Sbjct: 168 FNVYGP------REYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKD 221
Query: 231 LANAHIMALEYLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFPITY 280
+ + ++ LE G S NLGTG + ++ + I Y
Sbjct: 222 VVDVNLWLLE----NGVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEY 267
>gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC;
Provisional.
Length = 348
Score = 73.6 bits (180), Expect = 6e-14
Identities = 80/341 (23%), Positives = 142/341 (41%), Gaps = 40/341 (11%)
Query: 4 KNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFV----------LWGPLE--Q 51
K L+ G AG+IG+ L I LDN S+G+ + W Q
Sbjct: 16 KRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQ 75
Query: 52 VDICDYTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNV 111
DI +T+ + V+H A L ++ S+K+P NI G N++ A +++V
Sbjct: 76 GDIRKFTDCQKACKNVD--YVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHV 133
Query: 112 RRFIFSSTCATYGIPHNTIITENDPQESITPYGYTKYVVERELLQHNKVNGLRSVVLRYF 171
F ++++ +TYG + E ++PY TKYV E + ++ LRYF
Sbjct: 134 SSFTYAASSSTYGDHPDLPKIEERIGRPLSPYAVTKYVNELYADVFARSYEFNAIGLRYF 193
Query: 172 NAAGATLDSIIGEWHNPE---THVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHV 228
N + G NP + VIP I + + + Y DG+ RD+ ++
Sbjct: 194 N--------VFGRRQNPNGAYSAVIPRWILSLLKDEPI-------YINGDGSTSRDFCYI 238
Query: 229 LDLANAHIMALEYLINQGDSIAINLGTGTGITVKEIISTIQSMYEC-------AFPITYE 281
++ A++++ + N+ G ++ E+ I+ A PI Y+
Sbjct: 239 ENVIQANLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPI-YK 297
Query: 282 SRRIGDPPSLVADNKKAKKILGWNPKYKLRDIIESAWNWHL 322
R GD AD K K L + P++ +++ ++ W++
Sbjct: 298 DFRDGDVKHSQADITKIKTFLSYEPEFDIKEGLKQTLKWYI 338
>gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase. The
sequences in this family are members of the pfam01370
superfamily of NAD-dependent epimerases and dehydratases
typically acting on nucleotide-sugar substrates. The
genes of the family modeled here are generally in the
same locus with genes involved in the biosynthesis and
elaboration of hopene, the cyclization product of the
polyisoprenoid squalene.
Length = 328
Score = 72.7 bits (179), Expect = 1e-13
Identities = 68/252 (26%), Positives = 109/252 (43%), Gaps = 52/252 (20%)
Query: 6 VLVVGGAGYIGAHTCRVLYERGFLPIVL-------DNLSSGHAEFVLWGPLEQVDICDYT 58
VLV G G++G+ R+L E+G VL NL E V G D+ D
Sbjct: 3 VLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVE-G-----DLRDPA 56
Query: 59 NLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSS 118
+LR A + ++ H A + +P Y N++G+ NL+ A+E+ V R +++S
Sbjct: 57 SLRKAVAGCR--ALFHVAADYRLW--APDPEEMYAANVEGTRNLLRAALEAGVERVVYTS 112
Query: 119 TCATYGIPHN-TIITENDP---QESITPYGYTKYVVERELLQHNKVNGLRSVVLRYFNAA 174
+ AT G+ + T E P + I Y +K++ E+ L+ GL V++
Sbjct: 113 SVATLGVRGDGTPADETTPSSLDDMIGHYKRSKFLAEQAALEMAAEKGLPVVIV------ 166
Query: 175 GATLDSIIGEWHNPETHVIPLAIK-TAMGYQNSFKVFGQDYATRD-----GTCLRDYIHV 228
NP T + P IK T G ++ D+ T L + +HV
Sbjct: 167 ------------NPSTPIGPRDIKPTPTG-----RII-VDFLNGKMPAYVDTGL-NLVHV 207
Query: 229 LDLANAHIMALE 240
D+A H++ALE
Sbjct: 208 DDVAEGHLLALE 219
>gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase.
Length = 436
Score = 67.0 bits (163), Expect = 7e-12
Identities = 78/321 (24%), Positives = 134/321 (41%), Gaps = 43/321 (13%)
Query: 6 VLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFV--LWG----PLEQVDICDYTN 59
++V GGAG++G+H L RG IV+DN +G E + L+G L + D+ +
Sbjct: 123 IVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPIL 182
Query: 60 LRA--VFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFS 117
L ++ PAS +H+ NP + N+ G+ N++ A RF+ +
Sbjct: 183 LEVDQIYHLACPASPVHYK---------YNPVKTIKTNVMGTLNMLGLAKRVGA-RFLLT 232
Query: 118 STCATYGIP-----HNTIITENDPQESITPYGYTKYVVERELLQHNKVNGLRSVVLRYFN 172
ST YG P T +P + Y K E + +++ G+ + R FN
Sbjct: 233 STSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFN 292
Query: 173 AAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDLA 232
G + G ++ + I+ + V+G DG R + +V DL
Sbjct: 293 TYGPRMCLDDGR---VVSNFVAQTIR-----KQPMTVYG------DGKQTRSFQYVSDLV 338
Query: 233 NAHIMALEYLINQGDSIA-INLGTGTGITVKEIISTIQSMYECAFPITYESRRIGDPPSL 291
+ + +E G+ + NLG T+ E+ ++ + + I ++ DP
Sbjct: 339 DGLVALME-----GEHVGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPNTADDPHKR 393
Query: 292 VADNKKAKKILGWNPKYKLRD 312
D KAK++L W PK LR+
Sbjct: 394 KPDISKAKELLNWEPKISLRE 414
>gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase.
Length = 442
Score = 63.5 bits (154), Expect = 8e-11
Identities = 82/320 (25%), Positives = 130/320 (40%), Gaps = 43/320 (13%)
Query: 6 VLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLW---GP---LEQVDICDYTN 59
V+V GGAG++G+H L RG IV+DN +G E V+ P L + D+ +
Sbjct: 122 VVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPIL 181
Query: 60 LRA--VFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFS 117
L ++ PAS +H+ NP + N+ G+ N++ A R F+ +
Sbjct: 182 LEVDQIYHLACPASPVHYK---------FNPVKTIKTNVVGTLNMLGLAKRVGAR-FLLT 231
Query: 118 STCATYGIP--HNTIIT---ENDPQESITPYGYTKYVVERELLQHNKVNGLRSVVLRYFN 172
ST YG P H + T +P + Y K E + +++ + + R FN
Sbjct: 232 STSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFN 291
Query: 173 AAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDLA 232
G + G V+ + A+ + V+G DG R + V DL
Sbjct: 292 TYGPRMCIDDGR-------VVSNFVAQAL-RKEPLTVYG------DGKQTRSFQFVSDLV 337
Query: 233 NAHIMALEYLINQGDSIA-INLGTGTGITVKEIISTIQSMYECAFPITYESRRIGDPPSL 291
+ +E G+ + NLG T+ E+ +Q + I + DP
Sbjct: 338 EGLMRLME-----GEHVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNTEDDPHKR 392
Query: 292 VADNKKAKKILGWNPKYKLR 311
D KAK++LGW PK LR
Sbjct: 393 KPDITKAKELLGWEPKVSLR 412
>gnl|CDD|162953 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase. Members of
this protein family are CDP-glucose 4,6-dehydratase from
a variety of Gram-negative and Gram-positive bacteria.
Members typically are encoded next to a gene that
encodes a glucose-1-phosphate cytidylyltransferase,
which produces the substrate, CDP-D-glucose, used by
this enzyme to produce CDP-4-keto-6-deoxyglucose.
Length = 349
Score = 55.8 bits (135), Expect = 1e-08
Identities = 64/305 (20%), Positives = 106/305 (34%), Gaps = 60/305 (19%)
Query: 53 DICDYTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVR 112
DI D LR A+++P V H A + +S +P +E N+ G+ NL+
Sbjct: 60 DIRDAAKLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAI------ 113
Query: 113 RFIFSSTCATYGIPHNTIIT---------------ENDPQESITPYGYTKYVVE------ 151
R I S A +T E DP PY +K E
Sbjct: 114 RAI-GSVKAV------VNVTSDKCYRNDEWVWGYRETDPLGGHDPYSSSKACAELVIASY 166
Query: 152 -RELLQHNKVNGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVF 210
+G++ R N G G+W E +IP I+
Sbjct: 167 RSSFFGVANFHGIKIASARAGNVIGG------GDW--AEDRLIPDVIRAFSS-------- 210
Query: 211 GQDYATRDGTCLRDYIHVLDLANAHIMALEYLINQGDSI--AINLG--TGTGITVKEIIS 266
+ R+ R + HVL+ + +++ E L A N G V E++
Sbjct: 211 NKIVIIRNPDATRPWQHVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVV 270
Query: 267 TIQSMYECAFPITYESRRIGDPPS----LVADNKKAKKILGWNPKYKLRDIIESAWNWHL 322
+ +E + P L D+ KA+ +LGW+P++ L + + +W+
Sbjct: 271 DALEFWWGD-DAEWEDDSDLNHPHEARLLKLDSSKARTLLGWHPRWGLEEAVSRTVDWYK 329
Query: 323 KYPRS 327
+ R
Sbjct: 330 AWLRG 334
>gnl|CDD|177902 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme.
Length = 668
Score = 55.9 bits (135), Expect = 1e-08
Identities = 69/253 (27%), Positives = 103/253 (40%), Gaps = 43/253 (16%)
Query: 2 ENKNVLVVGGAGYIGAHTCRVLYER--GFLPIVLDNL-------------SSGHAEFVLW 46
E KN+L+ G AG+I +H L + +VLD L SS + +FV
Sbjct: 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVK- 63
Query: 47 GPLEQVDICDYTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLI-AT 105
G + D+ +Y + ++MHFA T++ S N F + NI G+ L+ A
Sbjct: 64 GDIASADLVNY-----LLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEAC 118
Query: 106 AIESNVRRFIFSSTCATYGIPHNTIITENDPQESI---TPYGYTKYVVERELLQHNKVNG 162
+ +RRFI ST YG N + PY TK E ++ + + G
Sbjct: 119 KVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYG 178
Query: 163 LRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAM-GYQNSFKVFGQDYATRDGTC 221
L + R N G PE +IP I AM G + G DG+
Sbjct: 179 LPVITTRGNNVYGPN--------QFPEK-LIPKFILLAMQGKP--LPIHG------DGSN 221
Query: 222 LRDYIHVLDLANA 234
+R Y++ D+A A
Sbjct: 222 VRSYLYCEDVAEA 234
>gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase.
Length = 370
Score = 54.4 bits (131), Expect = 4e-08
Identities = 76/336 (22%), Positives = 127/336 (37%), Gaps = 44/336 (13%)
Query: 2 ENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHA-------EFVLWGPLEQVDI 54
E + + G G+I +H R L G I D + H EF L L ++
Sbjct: 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHL-VDLRVMEN 78
Query: 55 CDYTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRF 114
C + V + A+ M G + SV + Y N SFN++ A + V+RF
Sbjct: 79 CLKV-TKGVDHVFNLAADMGGMGFIQSNHSV----IMYN-NTMISFNMLEAARINGVKRF 132
Query: 115 IFSSTCATYG----IPHNTIITEND--PQESITPYGYTKYVVERELLQHNKVNGLRSVVL 168
++S+ Y + N + E+D P E YG K E + K G+ +
Sbjct: 133 FYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRIG 192
Query: 169 RYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIH- 227
R+ N G G W + A+ + F+++G TR T + + +
Sbjct: 193 RFHNIYGP-----FGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEG 247
Query: 228 VLDLANAHIMALEYLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFPITYESRRIGD 287
VL L + +N+G+ +++ E+ S PI + I
Sbjct: 248 VLRLTKSDF-----------REPVNIGSDEMVSMNEMAEIALSFENKKLPI----KHIPG 292
Query: 288 PPSLV---ADNKKAKKILGWNPKYKLRDIIESAWNW 320
P + +DN K+ LGW P +L+D + + W
Sbjct: 293 PEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFW 328
>gnl|CDD|182998 PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase;
Provisional.
Length = 308
Score = 52.0 bits (125), Expect = 2e-07
Identities = 69/274 (25%), Positives = 121/274 (44%), Gaps = 60/274 (21%)
Query: 6 VLVVGGAGYIGAHTCRVLYERGFLPI-VLDNLSSGHAEFVLWGPLEQVDICDYTNLRAVF 64
++V GGAG+IG++ + L ++G I V+DNL G +FV L +DI DY + + F
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG-TKFV---NLVDLDIADYMD-KEDF 56
Query: 65 AKYQPASVMHFAGLTNISESVKNPSLFYE----------------INIKGSFNLIATAIE 108
A +M +I ++F+E N + S L+ +E
Sbjct: 57 L----AQIMAGDDFGDIE------AIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLE 106
Query: 109 SNVRRFIFSSTCATYGIPHNTIITENDPQESITPYGYTKYVVE---RELLQH--NKVNGL 163
+ F+++S+ ATYG + I E + ++ + YGY+K++ + R++L +++ G
Sbjct: 107 REIP-FLYASSAATYGGRTDDFIEEREYEKPLNVYGYSKFLFDEYVRQILPEANSQICG- 164
Query: 164 RSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVF-GQDYATRDGTCL 222
RYFN G E H + + + + K+F G +
Sbjct: 165 ----FRYFNVYGPR------EGHKGSMASVAFHLNNQLNNGENPKLFEGSE------NFK 208
Query: 223 RDYIHVLDLANAHIMALEYLINQGDSIAINLGTG 256
RD+++V D+A ++ E G S N GTG
Sbjct: 209 RDFVYVGDVAAVNLWFWE----NGVSGIFNCGTG 238
>gnl|CDD|178184 PLN02572, PLN02572, UDP-sulfoquinovose synthase.
Length = 442
Score = 45.6 bits (108), Expect = 2e-05
Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 28/157 (17%)
Query: 2 ENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLS-----------------SGHAEFV 44
+ K V+V+GG GY G T L +RG+ ++DNL S H
Sbjct: 46 KKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVR 105
Query: 45 LWGP-------LEQVDICDYTNLRAVFAKYQPASVMHFAGLTNISESVKNPS-LFYEI-- 94
W L DICD+ L F ++P +V+HF + S+ + S +
Sbjct: 106 RWKEVSGKEIELYVGDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHN 165
Query: 95 NIKGSFNLIATAIESNVR-RFIFSSTCATYGIPHNTI 130
N+ G+ N++ E + T YG P+ I
Sbjct: 166 NVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDI 202
>gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase. This
enzyme catalyzes the first step in the biosynthesis of
pseudaminic acid, the conversion of
UDP-N-acetylglucosamine to
UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences
are members of the broader pfam01073 (3-beta
hydroxysteroid dehydrogenase/isomerase family) family.
Length = 324
Score = 42.4 bits (100), Expect = 2e-04
Identities = 46/193 (23%), Positives = 73/193 (37%), Gaps = 44/193 (22%)
Query: 3 NKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHA------EFVLWG-----PLEQ 51
NK++L+ GG G G + F+ +L+N + E W P
Sbjct: 4 NKSILITGGTGSFG---------KAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPC 54
Query: 52 V-----DICDYTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATA 106
+ D+ D L V+H A L + + NP NI G+ N+I A
Sbjct: 55 LRFFIGDVRDKERLTRALRGVD--YVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAA 112
Query: 107 IESNVRRFIFSSTCATYGIPHNTIITENDPQESITPYGYTKYVVERELLQHNKVNG---L 163
I++ V+R + ST + I YG TK ++ + N ++G
Sbjct: 113 IDNGVKRVVALST--------------DKAANPINLYGATKLASDKLFVAANNISGSKGT 158
Query: 164 RSVVLRYFNAAGA 176
R V+RY N G+
Sbjct: 159 RFSVVRYGNVVGS 171
>gnl|CDD|177862 PLN02214, PLN02214, cinnamoyl-CoA reductase.
Length = 342
Score = 41.7 bits (97), Expect = 2e-04
Identities = 63/265 (23%), Positives = 94/265 (35%), Gaps = 63/265 (23%)
Query: 4 KNVLVVGGAGYIGAHTCRVLYERGFL------------PIVLDNLSSGHAEFVLWGPLEQ 51
K V V G GYI + ++L ERG+ L L G +L +
Sbjct: 11 KTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILC----K 66
Query: 52 VDICDYTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNV 111
D+ DY L+A V H A S +P E + G+ +I A E+ V
Sbjct: 67 ADLQDYEALKAAIDGCD--GVFHTA-----SPVTDDPEQMVEPAVNGAKFVINAAAEAKV 119
Query: 112 RRFIFSSTC-ATYGIPHNTIITENDPQESITP---------------YGYTKYVVERELL 155
+R + +S+ A Y P+ DP+ + Y Y K V E+
Sbjct: 120 KRVVITSSIGAVYMDPN------RDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAW 173
Query: 156 QHNKVNGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYA 215
+ K G+ VVL G L I + HV+ +A Y N
Sbjct: 174 ETAKEKGVDLVVLNPVLVLGPPLQPTI---NASLYHVLKYLTGSAKTYAN---------- 220
Query: 216 TRDGTCLRDYIHVLDLANAHIMALE 240
+ Y+ V D+A AH++ E
Sbjct: 221 -----LTQAYVDVRDVALAHVLVYE 240
>gnl|CDD|178484 PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase.
Length = 353
Score = 41.3 bits (97), Expect = 4e-04
Identities = 72/358 (20%), Positives = 137/358 (38%), Gaps = 71/358 (19%)
Query: 8 VVGGAGYIGAHTCRVLYERGFL-PIVLDNLSSGHAEFVLWGPLEQV-----DICDYTNLR 61
V G GYIG+ ++L +RG+ L + + W +++ D+ + +
Sbjct: 15 VTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFD 74
Query: 62 AVF----AKYQPASVMHF---AGLTNISESVKNPSLFYEINIKGSFNLIATAIESN-VRR 113
+ A+ M F + NI E V+ S + IKG+ N++ + ++S V+R
Sbjct: 75 EAVKGCDGVFHVAASMEFDVSSDHNNIEEYVQ--SKVIDPAIKGTLNVLKSCLKSKTVKR 132
Query: 114 FIFSSTCATY----------GIPHNTIITENDPQESITPYGY----TKYVVERELLQHNK 159
+F+S+ +T + T T D + G+ +K + E ++ K
Sbjct: 133 VVFTSSISTLTAKDSNGRWRAVVDETCQTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAK 192
Query: 160 VNGLRSVVLRYFNAAGATLDS------------IIGEWHNPETHVIPLAIKTAMGYQNSF 207
NG+ V + AG L I G+ + I A+ + MG
Sbjct: 193 ENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGD---SKLFSILSAVNSRMG----- 244
Query: 208 KVFGQDYATRDGTCLRDYIHVLDLANAHIMALEYLINQGDSIAINLGTGTGITVKEIIST 267
+ +H+ D+ +AHI +E +G I + E+I+
Sbjct: 245 -------------SIA-LVHIEDICDAHIFLMEQTKAEGRYIC----CVDSYDMSELINH 286
Query: 268 IQSMYECAFPITYESRRI-GDPPSLVADNKKAKKILGWNPKYKLRDIIESAWNWHLKY 324
+ Y C+ G PS ++ +KK + LG+ KY + +II+ + + +
Sbjct: 287 LSKEYPCSNIQVRLDEEKRGSIPSEIS-SKKLRD-LGFEYKYGIEEIIDQTIDCCVDH 342
>gnl|CDD|180299 PRK05872, PRK05872, short chain dehydrogenase; Provisional.
Length = 296
Score = 40.3 bits (95), Expect = 8e-04
Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 31/146 (21%)
Query: 1 MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLD-----------NLSSGHAEFVLWGPL 49
+ K V+V G A IGA R L+ RG ++D L +
Sbjct: 7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTV---- 62
Query: 50 EQVDICDYTNLRA----VFAKYQPAS-VMHFAGLTNISESVK--NPSLF---YEINIKGS 99
D+ D ++A ++ V+ AG+ + SV +P F ++N+ G
Sbjct: 63 -VADVTDLAAMQAAAEEAVERFGGIDVVVANAGIAS-GGSVAQVDPDAFRRVIDVNLLGV 120
Query: 100 FNLIATAIESNVRR----FIFSSTCA 121
F+ + + + + R SS A
Sbjct: 121 FHTVRATLPALIERRGYVLQVSSLAA 146
>gnl|CDD|162255 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase. This enzyme
catalyzes the last of 4 steps in making dTDP-rhamnose, a
precursor of LPS core antigen, O-antigen, etc.
Length = 287
Score = 39.7 bits (93), Expect = 0.001
Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 19/164 (11%)
Query: 6 VLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNLRAVFA 65
+L+ G G +G + L G + + L + Q+D+ D L +
Sbjct: 2 ILITGANGQLGRELVQQLSPEGRVVVALTS--------------SQLDLTDPEALERLLR 47
Query: 66 KYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCATYGI 125
+P +V++ A T++ + +P + +N NL A R + ST +
Sbjct: 48 AIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGA-RLVHISTDYVFDG 106
Query: 126 PHNTIITENDPQESITPYGYTKYVVERELLQHNKVNGLRSVVLR 169
E+D + YG +K E+ + G ++++R
Sbjct: 107 EGKRPYREDDATNPLNVYGQSKLAGEQAIRAA----GPNALIVR 146
>gnl|CDD|178259 PLN02653, PLN02653, GDP-mannose 4,6-dehydratase.
Length = 340
Score = 39.4 bits (92), Expect = 0.001
Identities = 62/289 (21%), Positives = 110/289 (38%), Gaps = 60/289 (20%)
Query: 53 DICDYTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNL---IATAIES 109
D+ D ++LR +P V + A ++++ S + P ++ G+ L + +
Sbjct: 68 DLSDASSLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQE 127
Query: 110 NVR--RFIFSSTCATYGIPHNTIITENDPQESITP-YGYTKYVVERELLQHNKVNGLRSV 166
R ++ + + YG + PQ TP + + Y V + VN
Sbjct: 128 TGRQIKYYQAGSSEMYG-------STPPPQSETTPFHPRSPYAVAKVAAHWYTVN----- 175
Query: 167 VLRYFNAAGATL-DSIIGEWHNP---ETHV---IPLAI-KTAMGYQNSFKVF-GQDYATR 217
Y A G + I+ +P E V I A+ + +G Q K+F G A+R
Sbjct: 176 ---YREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQK--KLFLGNLDASR 230
Query: 218 DGTCLRDYIHVLDLANAHIMALEYLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFP 277
D DY+ A+ ++ Q + T TV+E + E AF
Sbjct: 231 DWGFAGDYVE----------AMWLMLQQEKPDDYVVATEESHTVEEFL-------EEAFG 273
Query: 278 ---ITYESRRIGDP----PS----LVADNKKAKKILGWNPKYKLRDIIE 315
+ ++ DP P+ L D KA+++LGW PK +++
Sbjct: 274 YVGLNWKDHVEIDPRYFRPAEVDNLKGDASKAREVLGWKPKVGFEQLVK 322
>gnl|CDD|129055 smart00822, PKS_KR, This enzymatic domain is part of bacterial
polyketide synthases and catalyses the first step in the
reductive modification of the beta-carbonyl centres in
the growing polyketide chain. It uses NADPH to reduce
the keto group to a hydroxy group.
Length = 180
Score = 38.6 bits (91), Expect = 0.002
Identities = 37/151 (24%), Positives = 53/151 (35%), Gaps = 39/151 (25%)
Query: 6 VLVVGGAGYIGAHTCRVLYERG-----FL---PIVLDNLSSGHAEFVLWGPLEQVDICDY 57
L+ GG G +G R L ERG L + AE G V CD
Sbjct: 3 YLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDV 62
Query: 58 TN-------LRAVFAKYQP-ASVMHFAG------LTNISE-------SVKNPSLFYEINI 96
+ L A+ A+ P V+H AG L N++ + K +
Sbjct: 63 ADRAALAAALAAIPARLGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPK---------V 113
Query: 97 KGSFNLIATAIESNVRRFI-FSSTCATYGIP 126
G++NL + + F+ FSS G P
Sbjct: 114 DGAWNLHELTRDLPLDFFVLFSSVAGVLGNP 144
>gnl|CDD|162378 TIGR01472, gmd, GDP-mannose 4,6-dehydratase. Excluded from this
model are members of the clade that score poorly because
of highly dervied (phylogenetically long-branch)
sequences, e.g. Aneurinibacillus thermoaerophilus Gmd,
described as a bifunctional GDP-mannose
4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase
(PUBMED:11096116).
Length = 343
Score = 38.7 bits (90), Expect = 0.002
Identities = 62/293 (21%), Positives = 106/293 (36%), Gaps = 34/293 (11%)
Query: 53 DICDYTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLI-ATAIESNV 111
D+ D +NLR + + +P + + A +++ S + P +++ G+ L+ A +
Sbjct: 63 DLTDSSNLRRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLI 122
Query: 112 R--RFIFSSTCATYGIPHNTIITENDPQESITPYGYTK-----YVVE-RELLQHNKVNGL 163
+ +F +ST YG E P +PY K V RE VNG+
Sbjct: 123 KSVKFYQASTSELYGKVQEIPQNETTPFYPRSPYAAAKLYAHWITVNYREAYGLFAVNGI 182
Query: 164 RSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAI-KTAMGYQNSFKVFGQDYATRDGTCL 222
FN GE N T I A K +G Q G A RD
Sbjct: 183 ------LFNHE----SPRRGE--NFVTRKITRAAAKIKLGLQEKL-YLGNLDAKRDWGHA 229
Query: 223 RDYIHVLDLANAHIMALEYLINQGDSIAIN-------LGTGTGI----TVKEIISTIQSM 271
+DY+ + L +Y+I G++ ++ G + + +
Sbjct: 230 KDYVEAMWLMLQQDKPDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKET 289
Query: 272 YECAFPITYESRRIGDPPSLVADNKKAKKILGWNPKYKLRDIIESAWNWHLKY 324
+ I R + L+ D KAK+ LGW P+ +++ L+
Sbjct: 290 GKVHVEIDPRYFRPTEVDLLLGDATKAKEKLGWKPEVSFEKLVKEMVEEDLEL 342
>gnl|CDD|183375 PRK11908, PRK11908, NAD-dependent epimerase/dehydratase family
protein; Provisional.
Length = 347
Score = 38.5 bits (90), Expect = 0.002
Identities = 45/197 (22%), Positives = 84/197 (42%), Gaps = 30/197 (15%)
Query: 4 KNVLVVGGAGYIGAHTC-RVL----YERGFLPIVLDNLSS--GHAEF-VLWGPLE-QVDI 54
K VL++G G+IG H R+L +E + + D L H G + +
Sbjct: 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEW 61
Query: 55 CDYTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRF 114
+Y +++ ++ + + VK P +E++ + + ++ +A++ +
Sbjct: 62 IEY-HVKKCDV------ILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHL 113
Query: 115 IFSSTCATYGIPHNTIITENDPQESITPYG--------Y--TKYVVERELLQHNKVNGLR 164
+F ST YG+ + E DP+ S YG Y +K +++R + + GL
Sbjct: 114 VFPSTSEVYGMCPDE---EFDPEASPLVYGPINKPRWIYACSKQLMDRVIWAYGMEEGLN 170
Query: 165 SVVLRYFNAAGATLDSI 181
+ R FN G LDSI
Sbjct: 171 FTLFRPFNWIGPGLDSI 187
>gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein.
Length = 322
Score = 38.1 bits (88), Expect = 0.003
Identities = 68/302 (22%), Positives = 117/302 (38%), Gaps = 71/302 (23%)
Query: 4 KNVLVVGGAGYIGAHTCRVLYERGF--------------------LPIVLDNLSSGHAEF 43
K V V G +GYI + ++L RG+ L + L A+
Sbjct: 6 KLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADL 65
Query: 44 VLWGPLEQ-VDICDYTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNL 102
+ EQ ++ CD AVF P F + + + +P+L KG+ N+
Sbjct: 66 LEESSFEQAIEGCD-----AVFHTASPV----FFTVKDPQTELIDPAL------KGTINV 110
Query: 103 IATAIE-SNVRRFIFSSTCATY-----GIPHNTIITE---NDP---QESITPYGYTKYVV 150
+ T E +V+R I +S+ A I N ++ E +DP +E+ Y +K +
Sbjct: 111 LNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNWYPLSKILA 170
Query: 151 ERELLQHNKVNGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVF 210
E + K NG+ VVL G L + +++ + + N +F
Sbjct: 171 ENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLN-----------FSVELIVDFINGKNLF 219
Query: 211 GQDYATRDGTCLRDYIHVLDLANAHIMALEYLINQGDSIAINLGTGTGITVKEIISTIQS 270
+ ++ V D+A AHI ALE G I G ++V +II ++
Sbjct: 220 NNRFYR--------FVDVRDVALAHIKALETPSANGRYII----DGPIMSVNDIIDILRE 267
Query: 271 MY 272
++
Sbjct: 268 LF 269
>gnl|CDD|149205 pfam07993, NAD_binding_4, Male sterility protein. This family
represents the C-terminal region of the male sterility
protein in a number of arabidopsis and drosophila. A
sequence-related jojoba acyl CoA reductase is also
included.
Length = 245
Score = 37.2 bits (87), Expect = 0.006
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 14/107 (13%)
Query: 72 VMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCATYGIPHNTI- 130
++H A N E + N+ G+ ++ A + F ST G +
Sbjct: 89 IIHNAATVNFVEPYSD---LRATNVLGTREVLRLAKQMKKLPFHHVSTAYVNGERGGLLE 145
Query: 131 --------ITENDPQESITPYGYTKYVVERELLQHNKVNGLRSVVLR 169
Y +K++ E+ + + GL V+ R
Sbjct: 146 EKPYPLDEDEPALLGGLPNGYTQSKWLAEQLVREAAG--GLPVVIYR 190
>gnl|CDD|180183 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Validated.
Length = 246
Score = 34.4 bits (80), Expect = 0.041
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 19/78 (24%)
Query: 1 MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLD-------------NLSSGHAEFVLWG 47
++ K LV G + IG L G ++ D + G A +
Sbjct: 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVL--- 59
Query: 48 PLEQVDICDYTNLRAVFA 65
D+ D +RA+
Sbjct: 60 ---VFDVSDEAAVRALIE 74
>gnl|CDD|178047 PLN02427, PLN02427, UDP-apiose/xylose synthase.
Length = 386
Score = 34.4 bits (79), Expect = 0.043
Identities = 56/263 (21%), Positives = 92/263 (34%), Gaps = 57/263 (21%)
Query: 110 NVRRFIFSSTCATYGIPHNTIITENDP----------QESITP------------YGYTK 147
N +R I STC YG + + ++ P +E +P Y K
Sbjct: 127 NNKRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDESPCIFGSIEKQRWSYACAK 186
Query: 148 YVVERELLQHNKVNGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSF 207
++ER + NGL ++R FN W P IP + G
Sbjct: 187 QLIERLIYAEGAENGLEFTIVRPFN------------WIGPRMDFIPGIDGPSEGVPRVL 234
Query: 208 KVFGQDYATRD-------GTCLRDYIHVLDLANAHIMALEYLINQGDSIAINLGT-GTGI 259
F + R+ G R ++++ D A ++ +E I N+G +
Sbjct: 235 ACFSNNLLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHI-FNVGNPNNEV 293
Query: 260 TVKEIISTIQSMY-----ECAFPIT--------YESRRIGDPPSLVADNKKAKKILGWNP 306
TV+++ + +Y E A + D + D K LGWNP
Sbjct: 294 TVRQLAEMMTEVYAKVSGEPALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNP 353
Query: 307 KYKLRDIIESAWNW-HLKYPRSL 328
K L D++ES + H Y ++
Sbjct: 354 KTSLWDLLESTLTYQHKTYAEAI 376
>gnl|CDD|169699 PRK09186, PRK09186, flagellin modification protein A;
Provisional.
Length = 256
Score = 33.8 bits (78), Expect = 0.064
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 13/79 (16%)
Query: 1 MENKNVLVVGGAGYIGAHTCRVLYERGFLPIV-----------LDNLSSGHAEFVLWGPL 49
++ K +L+ G G IG+ + + E G + I L++L L L
Sbjct: 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKL--SL 59
Query: 50 EQVDICDYTNLRAVFAKYQ 68
++DI D +L +K
Sbjct: 60 VELDITDQESLEEFLSKSA 78
>gnl|CDD|162515 TIGR01746, Thioester-redct, thioester reductase domain. It has
been suggested that a NADP-binding motif can be found in
the N-terminal portion of this domain that may form a
Rossman-type fold.
Length = 367
Score = 33.5 bits (77), Expect = 0.069
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 12/121 (9%)
Query: 71 SVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCATYGIPHNTI 130
+++H L N V S N+ G+ ++ A + + ST + +
Sbjct: 91 TIVHNGALVNW---VYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLST 147
Query: 131 ITENDP-----QESITPYGYTKYVVERELLQHNKVNGLRSVVLRYFNAAGATLDSIIGEW 185
+TE+D Y +K+V E L++ GL ++R G +S G
Sbjct: 148 VTEDDAIVTPPPGLAGGYAQSKWVAEL-LVREASDRGLPVTIVRPGRILG---NSYTGAI 203
Query: 186 H 186
+
Sbjct: 204 N 204
>gnl|CDD|181389 PRK08324, PRK08324, short chain dehydrogenase; Validated.
Length = 681
Score = 33.7 bits (78), Expect = 0.073
Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 19/114 (16%)
Query: 6 VLVVGGAGYIGAHTCRVLYERGFLPIVLD----NLSSGHAEFVLWGPLEQVDICDYTNLR 61
LV G AG IG T + L G ++ D + AE V CD T+
Sbjct: 425 ALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGV-ACDVTDEA 483
Query: 62 AVFAKYQPASVMHFAGL-------------TNISESVKNPSLFYEINIKGSFNL 102
AV A ++ A + F G+ S ++ +++N G F +
Sbjct: 484 AVQAAFEEA-ALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLV 536
>gnl|CDD|132250 TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxyl-CoA
dehydrogenase. Members of this protein family are the
enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase.
The enzymatic properties were confirmed experimentally
in Rhodopseudomonas palustris; the enzyme is
homotetrameric, and not sensitive to oxygen. This
enzyme is part of proposed pathway for degradation of
benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from
the analogous in Thauera aromatica. It also may occur
in degradation of the non-aromatic compound
cyclohexane-1-carboxylate.
Length = 250
Score = 33.4 bits (76), Expect = 0.086
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 1 MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFV 44
+++K +V GG G IG TCR E G V D L+ AE V
Sbjct: 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFD-LNREAAEKV 43
>gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated.
Length = 520
Score = 33.3 bits (76), Expect = 0.098
Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 14/115 (12%)
Query: 6 VLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEF--VLWGP--LEQVDICDYTNLR 61
V + GGA IG G +++D + G + L Q DI D +
Sbjct: 272 VAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVE 331
Query: 62 AVFA----KYQPASVM-HFAG-----LTNISESVKNPSLFYEINIKGSFNLIATA 106
+ FA ++ V+ + AG ++ +S ++ + Y++N+ G+F A
Sbjct: 332 SAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAA 386
>gnl|CDD|181668 PRK09135, PRK09135, pteridine reductase; Provisional.
Length = 249
Score = 33.0 bits (76), Expect = 0.11
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 1 MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAE 42
K L+ GGA IGA R L+ G+ + + S+ A+
Sbjct: 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEAD 45
>gnl|CDD|178263 PLN02657, PLN02657, 3,8-divinyl protochlorophyllide a 8-vinyl
reductase.
Length = 390
Score = 32.8 bits (75), Expect = 0.14
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 13/129 (10%)
Query: 2 ENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSG-------HAEFVLWGPLEQV-- 52
++ VLVVG GYIG R L RG+ + + SG E V
Sbjct: 59 KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFG 118
Query: 53 DICDYTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVR 112
D+ D +LR V + + L + + VK+ ++I+ + + N + E +
Sbjct: 119 DVTDADSLRKVLFSEGDPVDVVVSCLASRTGGVKDS---WKIDYQATKNSLDAGREVGAK 175
Query: 113 RFI-FSSTC 120
F+ S+ C
Sbjct: 176 HFVLLSAIC 184
>gnl|CDD|181508 PRK08628, PRK08628, short chain dehydrogenase; Provisional.
Length = 258
Score = 32.6 bits (75), Expect = 0.15
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 1 MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDN 35
+++K V+V GGA IGA L E G +P++
Sbjct: 5 LKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGR 39
>gnl|CDD|178569 PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase family protein.
Length = 325
Score = 31.5 bits (71), Expect = 0.34
Identities = 63/291 (21%), Positives = 108/291 (37%), Gaps = 48/291 (16%)
Query: 4 KNVLVVGGAGYIGAHTCRVLYERGFLPIVL-----DNLSSGHAEFVLWGPLEQVDICDYT 58
K V V G +GYI + ++L RG+ D + H L G E++ +
Sbjct: 6 KVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHL-LALDGAKERLKLFKAD 64
Query: 59 NLRAVFAKYQPA-----SVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIE-SNVR 112
L ++ A +V H A I+ + G+ N++ T + S+V+
Sbjct: 65 LLDE--GSFELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVK 122
Query: 113 RFIFSSTCATYGIPH-----NTIITEN---DP---QESITPYGYTKYVVERELLQHNKVN 161
R I +S+ A P N ++ E +P +E Y +K + E + K N
Sbjct: 123 RVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQWYVLSKTLAEDAAWRFAKDN 182
Query: 162 GLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTC 221
+ +VL + G P + I M +N F T
Sbjct: 183 EIDLIVL--------NPGLVTGPILQPTLNFSVAVIVELMKGKNPFN-----------TT 223
Query: 222 LRDYIHVLDLANAHIMALEYLINQGDSIAINLGTGTGITVKEIISTIQSMY 272
++ V D+A AH+ ALE G I G +T+K+I + ++ +
Sbjct: 224 HHRFVDVRDVALAHVKALETPSANGRYII----DGPVVTIKDIENVLREFF 270
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 31.2 bits (70), Expect = 0.42
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 289 PSLVADN-KKAKKILGWNPKYKLRDIIESA 317
P V DN KI+GW PK ++ DI+ESA
Sbjct: 101 PMSVYDNVAYGVKIVGWRPKLEIDDIVESA 130
>gnl|CDD|162529 TIGR01777, yfcH, conserved hypothetical protein TIGR01777. This
model represents a clade of proteins of unknown function
including the E. coli yfcH protein.
Length = 292
Score = 31.1 bits (71), Expect = 0.47
Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 23/174 (13%)
Query: 6 VLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNLRAVFA 65
+L+ GG G+IG + L + G +L A + + A
Sbjct: 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGAN-------TKWEGYKPWAPLAESE 53
Query: 66 KYQPA-SVMHFAGLTNISESVKNPS---LFYEINIKGSFNLIATAIESNVRR---FIFSS 118
+ A +V++ AG I++ + I + + AI + ++ FI +S
Sbjct: 54 ALEGADAVINLAGE-PIADKRWTEERKQEIRDSRIDTT-RALVEAIAAAEQKPKVFISAS 111
Query: 119 TCATYGIPHNTIITENDPQESITPYGYTKYVV---ERELLQHNKVNGLRSVVLR 169
YG + + TE D + + E + G R V+LR
Sbjct: 112 AVGYYGTSEDRVFTEEDSP---AGDDFLAELCRDWEEAAQAAEDL-GTRVVLLR 161
>gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional.
Length = 260
Score = 30.7 bits (70), Expect = 0.53
Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 41/141 (29%)
Query: 2 ENKNVLVVGGAGYIGAHTCRVLYERGFLPIVL------------DNLSSGHAE--FVLWG 47
+ K LV GG +GA R ERG +V+ L + A+ FV
Sbjct: 5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFV--- 61
Query: 48 PLEQVDICDYTNLRAVFAKYQPASVMHF---------AGLT---NISESVKNPSLF---Y 92
Q D+ D + R V A A+ F AGLT I ++ +P LF +
Sbjct: 62 ---QADLSDVEDCRRVVA----AADEAFGRLDALVNAAGLTDRGTILDT--SPELFDRHF 112
Query: 93 EINIKGSFNLIATAIESNVRR 113
+N++ F L+ AI+ RR
Sbjct: 113 AVNVRAPFFLMQEAIKLMRRR 133
>gnl|CDD|181045 PRK07578, PRK07578, short chain dehydrogenase; Provisional.
Length = 199
Score = 30.6 bits (70), Expect = 0.56
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 18/86 (20%)
Query: 6 VLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNLRAVFA 65
+LV+G +G IG L +R ++ SSG QVDI D ++RA+F
Sbjct: 3 ILVIGASGTIGRAVVAELSKRH--EVITAGRSSGDV---------QVDITDPASIRALFE 51
Query: 66 KYQP-------ASVMHFAGLTNISES 84
K A +HFA L +++
Sbjct: 52 KVGKVDAVVSAAGKVHFAPLAEMTDE 77
>gnl|CDD|149646 pfam08659, KR, KR domain. This enzymatic domain is part of
bacterial polyketide synthases and catalyses the first
step in the reductive modification of the beta-carbonyl
centres in the growing polyketide chain. It uses NADPH
to reduce the keto group to a hydroxy group.
Length = 181
Score = 30.6 bits (70), Expect = 0.56
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 6 VLVVGGAGYIGAHTCRVLYERG 27
LV GG G +G R L ERG
Sbjct: 3 YLVTGGLGGLGLELARWLAERG 24
>gnl|CDD|181299 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase;
Validated.
Length = 252
Score = 30.6 bits (70), Expect = 0.62
Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 23/118 (19%)
Query: 1 MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLD----NLSSGHAEFVLWGPLEQVDICD 56
K V V G A IG E G I D +D+ D
Sbjct: 6 FSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFLTQEDYPFA------TFVLDVSD 59
Query: 57 YTNLRAV----FAKYQP-------ASVMHFAGLTNISESVKNPSLFYEINIKGSFNLI 103
+ V A+ P A ++ ++S+ + +N G+FNL
Sbjct: 60 AAAVAQVCQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTF--AVNAGGAFNLF 115
>gnl|CDD|180126 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Validated.
Length = 248
Score = 29.8 bits (68), Expect = 1.0
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 1 MENKNVLVVGGAGYIGAHTCRVLYERGF 28
+E K LV G + IG L +G
Sbjct: 3 LEGKVALVTGASRGIGRAIAERLAAQGA 30
>gnl|CDD|178268 PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase family
protein.
Length = 322
Score = 28.5 bits (64), Expect = 2.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 1 MENKNVLVVGGAGYIGAHTCRVLYERGF 28
E K V V G +GYI + ++L +RG+
Sbjct: 2 GEGKVVCVTGASGYIASWLVKLLLQRGY 29
Score = 27.4 bits (61), Expect = 5.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 225 YIHVLDLANAHIMALE 240
++ V D+ANAHI A E
Sbjct: 225 WVDVRDVANAHIQAFE 240
>gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase;
Reviewed.
Length = 251
Score = 28.3 bits (64), Expect = 2.9
Identities = 13/44 (29%), Positives = 16/44 (36%)
Query: 1 MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFV 44
+E + LV G A IG L G IV+D A
Sbjct: 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATA 47
>gnl|CDD|163114 TIGR03031, cas_csx12, CRISPR-associated protein, Csx12 family.
Members of this family of CRISPR-associated (cas)
protein are found, so far, in CRISPR/cas loci in
Wolinella succinogenes DSM 1740, Legionella pneumophila
str. Paris, and Francisella tularensis, where the last
probably is an example of a degenerate CRISPR locus,
having neither repeats nor a functional Cas1. The
characteristic repeat length is 37 base pairs and period
is about 72. One region of this large protein shows
sequence similarity to PFAM model pfam01844, HNH
endonuclease.
Length = 802
Score = 28.4 bits (63), Expect = 2.9
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 265 ISTIQSMYECAFPITYESRRIGDPPSLVADNKKAKKIL 302
I + F I E DP L ++ K K++
Sbjct: 545 IEEARKNSGNTFKIDIEEALSKDPEHLTSNEKALLKLI 582
>gnl|CDD|184511 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 450
Score = 28.0 bits (63), Expect = 3.1
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 1 MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLD 34
++ K VLVV GAG G + L + G I+ D
Sbjct: 3 LKGKKVLVV-GAGVSGLALAKFLKKLGAKVILTD 35
>gnl|CDD|180804 PRK07041, PRK07041, short chain dehydrogenase; Provisional.
Length = 230
Score = 28.1 bits (63), Expect = 3.4
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 7 LVVGGAGYIGAHTCRVLYERG-FLPIV---LDNLSSGHAEFVLWGPLEQV--DICDYTNL 60
LVVGG+ IG R G + I D L++ P+ DI D +
Sbjct: 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAV 60
Query: 61 RAVFAKYQPA 70
A FA+ P
Sbjct: 61 DAFFAEAGPF 70
>gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated.
Length = 238
Score = 27.9 bits (63), Expect = 3.7
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 1 MENKNVLVVGGAGYIGAHTCRVLYERG 27
++ K VLV G IG L RG
Sbjct: 4 IKGKVVLVTGANRGIGRAFVEQLLARG 30
>gnl|CDD|181239 PRK08125, PRK08125, bifunctional UDP-glucuronic acid
decarboxylase/UDP-4-amino-4-deoxy-L-arabinose
formyltransferase; Validated.
Length = 660
Score = 27.6 bits (62), Expect = 4.1
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 83 ESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCATYGIPHNTIITENDPQESITP 142
E +NP +E++ + + +I ++ N +R IF ST YG+ + E+ + P
Sbjct: 397 EYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPSTSEVYGMCTDKYFDEDTSNLIVGP 455
Query: 143 -------YGYTKYVVERELLQHNKVNGLRSVVLRYFNAAGATLDSI 181
Y +K +++R + + + GLR + R FN G LD++
Sbjct: 456 INKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNL 501
Score = 26.5 bits (59), Expect = 9.5
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 296 KKAKKILGWNPKYKLRDIIESAWNWHLK 323
+ A+++L W PK +++ I+ ++ L+
Sbjct: 624 RNARRLLDWEPKIDMQETIDETLDFFLR 651
>gnl|CDD|183776 PRK12827, PRK12827, short chain dehydrogenase; Provisional.
Length = 249
Score = 27.8 bits (62), Expect = 4.3
Identities = 32/160 (20%), Positives = 50/160 (31%), Gaps = 53/160 (33%)
Query: 4 KNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSS-----------------GHAEFVLW 46
+ VL+ GG+G +G L G IVLD G A +
Sbjct: 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGL-- 64
Query: 47 GPLEQVDICDYTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLF--------------- 91
D+ D+ RA A V F L + V N +
Sbjct: 65 ----AFDVRDFAATRAALD----AGVEEFGRLDIL---VNNAGIATDAAFAELSIEEWDD 113
Query: 92 -YEINIKGSFNLIATAIESNVR-----RFIFSSTCATYGI 125
++N+ G FN+ A+ +R R + + G+
Sbjct: 114 VIDVNLDGFFNVTQAALPPMIRARRGGRIVN--IASVAGV 151
>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.
Length = 438
Score = 27.4 bits (61), Expect = 4.6
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 1 MENKNVLVVGGAGYIGAHTCRVLYERG 27
+ LVVG AGYI LYERG
Sbjct: 146 NQVDKALVVG-AGYISLEVLENLYERG 171
>gnl|CDD|178819 PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.
Length = 423
Score = 27.5 bits (62), Expect = 5.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 1 MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFV 44
+ K VLV+ GAG +G + L E+G I + N + AE +
Sbjct: 180 LSGKKVLVI-GAGEMGELVAKHLAEKGVRKITVANRTLERAEEL 222
>gnl|CDD|180879 PRK07201, PRK07201, short chain dehydrogenase; Provisional.
Length = 657
Score = 27.2 bits (61), Expect = 6.1
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 2 ENKNVLVVGGAGYIGAHTCRVLYERGFLPIVL----DNLSSGHAEFVLWGPLEQVDICDY 57
K VL+ G + IG T + E G ++ + L AE G CD
Sbjct: 370 VGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDL 429
Query: 58 TNLRAV 63
T+ AV
Sbjct: 430 TDSAAV 435
>gnl|CDD|177655 PLN00016, PLN00016, RNA-binding protein; Provisional.
Length = 378
Score = 27.4 bits (61), Expect = 6.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 297 KAKKILGWNPKYKLRD 312
KAK+ LGW PK+ L +
Sbjct: 326 KAKEELGWTPKFDLVE 341
>gnl|CDD|163268 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 27.0 bits (60), Expect = 7.9
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 2 ENKNVLVVGGAGYIGAHTCRVLYER 26
V + G G++G+ R L R
Sbjct: 970 TPITVFLTGATGFLGSFILRDLLTR 994
>gnl|CDD|178616 PLN03064, PLN03064, alpha,alpha-trehalose-phosphate synthase
(UDP-forming); Provisional.
Length = 934
Score = 26.7 bits (59), Expect = 8.1
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 21 RVLYERGFLPIVLDNLS-----SGHAEFVLWG-----PLEQVDICDYT-NLRAVFAKYQP 69
+ L E+ +P+ LD +G+ +LW L Q D T + ++ FA Y+
Sbjct: 157 KALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKK 216
Query: 70 ASVMHFAGLTN 80
A+ M FA + N
Sbjct: 217 ANQM-FADVVN 226
>gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase;
Provisional.
Length = 259
Score = 26.5 bits (59), Expect = 8.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 2 ENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLD 34
N+ +V+GG +GA C L E G+ V D
Sbjct: 1 MNQVAVVIGGGQTLGAFLCHGLAEEGYRVAVAD 33
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease.
Length = 557
Score = 26.7 bits (59), Expect = 9.2
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 96 IKGS--FNLIATAIESNVRRFIFSSTCATYGIPHNTIITENDPQESITPYGYT 146
+K S N I TAI V F+ + T N ITE PYG+T
Sbjct: 180 VKESAWVNKIFTAINILVLLFVIIAG-FTKADVANWSITEEKGAGGFMPYGFT 231
>gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional.
Length = 250
Score = 26.5 bits (59), Expect = 9.3
Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 33/154 (21%)
Query: 1 MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNL-------------SSGHAEFVLWG 47
+ K LV G A +GA L E G D L + G A +
Sbjct: 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAI--- 61
Query: 48 PLEQVDICDYTNLRAVFAKYQPA-----SVMHFAGLTNISESVK-NPSLF---YEINIKG 98
D+ D +++ F A +++ AG+TN + + + + +N++G
Sbjct: 62 ---AADLADPASVQRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRG 118
Query: 99 SFNLIATA----IESNVRRFI-FSSTCATYGIPH 127
+F ++ A +S R + +S A +G P
Sbjct: 119 TFLMLRAALPHLRDSGRGRIVNLASDTALWGAPK 152
>gnl|CDD|181126 PRK07806, PRK07806, short chain dehydrogenase; Provisional.
Length = 248
Score = 26.6 bits (59), Expect = 9.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 3 NKNVLVVGGAGYIGAHTCRVLYERG 27
K LV G + IGA T ++L G
Sbjct: 6 GKTALVTGSSRGIGADTAKILAGAG 30
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.136 0.413
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,476,730
Number of extensions: 348226
Number of successful extensions: 839
Number of sequences better than 10.0: 1
Number of HSP's gapped: 795
Number of HSP's successfully gapped: 89
Length of query: 333
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 239
Effective length of database: 3,963,321
Effective search space: 947233719
Effective search space used: 947233719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)