HHsearch alignment of GI: 254780329 and MMDB domain: 1cqm_A_

>1cqm_A (A:) Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus}
Probab=99.96  E-value=1e-29  Score=194.39  Aligned_cols=101  Identities=24%  Similarity=0.451  Sum_probs=97.7

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCCCCEEEEEEEEEECCHHHHHHHHHHHC
Q ss_conf             98705999987899999999999999999985697899970368653530322241899999998089779999999808
Q gi|254780329|r    1 MKLYEHVFLLRQDISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKNRKAYYVFMNIASPPAAIHEMKRKMR   80 (135)
Q Consensus         1 M~~YE~~~i~~p~~~~~~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~~~lk   80 (135)
                      ||+||++||++|++++++++++++++.+.|.++||.|.++++||+|+|||||+|+++|+|++++|+++|+.+++|++.|+
T Consensus         1 M~~YE~~~i~~~~~~~~~~~~~~~~~~~~i~~~gg~i~~~e~~G~r~LaY~Ikk~~~G~Y~~~~f~~~~~~i~el~~~lr   80 (101)
T 1cqm_A            1 MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELR   80 (101)
T ss_dssp             CEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEECCCCCEEEEEEEEEEECHHHHHHHHHHHC
T ss_conf             98614999988999999999999999999987898999998761510660747876899999999959999999999867


Q ss_pred             CCCHHEEEEEEEECCCCCCCC
Q ss_conf             980210011244113455643
Q gi|254780329|r   81 IDENVLRSLTLLVDSHEQSPT  101 (135)
Q Consensus        81 ~~~~VLR~l~vk~~~~~~~~~  101 (135)
                      +|++|||||++|+++....++
T Consensus        81 ~~~~VlR~l~vk~~~~~~~~s  101 (101)
T 1cqm_A           81 IRDNVRRVMVVKSQEPFLANA  101 (101)
T ss_dssp             TSTTEEEEEEEECSSCCC---
T ss_pred             CCCCEEEEEEEECCCCCCCCC
T ss_conf             898848999997277668999