HHsearch results for GI: 254780329 and protein with PDBid: 3i1m_F
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F 1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F 2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F* 2vho_F ...
Probab=99.97 E-value=7.8e-33 Score=211.75 Aligned_cols=109 Identities=29% Similarity=0.544 Sum_probs=102.9
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCCCCEEEEEEEEEECCHHHHHHHHHHHC
Q ss_conf 98705999987899999999999999999985697899970368653530322241899999998089779999999808
Q gi|254780329|r 1 MKLYEHVFLLRQDISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKNRKAYYVFMNIASPPAAIHEMKRKMR 80 (135)
Q Consensus 1 M~~YE~~~i~~p~~~~~~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~~~lk 80 (135)
||+||+|||++|++++ ++..+++++.++|+++||+|.++++||+|+|||+|+|+++|+|++|+|.++|+.|++|++.|+
T Consensus 1 Mr~YE~~~Il~p~~~e-~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~K~~~G~Y~~~~f~~~~~~i~el~~~lk 79 (135)
T 3i1m_F 1 MRHYEIVFMVHPDQSE-QVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFR 79 (135)
T ss_dssp CCEECBEEEECSTTTT-SHHHHHHHHHHHHHHTTCEECCCEEEEEECCSSCTTSSSCEEEEECCEECCTTHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCHH-HHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHCCCCCCCEEEEEEEEEEECHHHHHHHHHHHC
T ss_conf 9863399996888078-999999999999986898899975023421001135789899999999849999999999965
Q ss_pred CCCHHEEEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 980210011244113455643576532121
Q gi|254780329|r 81 IDENVLRSLTLLVDSHEQSPTLTIQRHDRD 110 (135)
Q Consensus 81 ~~~~VLR~l~vk~~~~~~~~~~~~~~~~~~ 110 (135)
++++|||||+||+++....++++.+.....
T Consensus 80 ~~~~VLR~l~vk~~e~~~~~~~~~~~~~e~ 109 (135)
T 3i1m_F 80 FNDAVIRSMVMRTKHAVTEASPMVKAKDER 109 (135)
T ss_dssp HCSSEESCCBCCCSSCCCSCC---------
T ss_pred CCCCEEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 660400678998425666757544200110