RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780329|ref|YP_003064742.1| 30S ribosomal protein S6
[Candidatus Liberibacter asiaticus str. psy62]
         (135 letters)



>d2qalf1 d.58.14.1 (F:1-100) Ribosomal protein S6 {Escherichia coli
           [TaxId: 562]}
          Length = 100

 Score =  103 bits (259), Expect = 5e-24
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 1/100 (1%)

Query: 1   MKLYEHVFLLRQDISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKNRKAYY 60
           M+ YE VF++  D S +Q+   I +Y + I    G++  + + G R +AY I K  KA+Y
Sbjct: 1   MRHYEIVFMVHPDQS-EQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHY 59

Query: 61  VFMNIASPPAAIHEMKRKMRIDENVLRSLTLLVDSHEQSP 100
           V MN+ +P   I E++   R ++ V+RS+ +         
Sbjct: 60  VLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEA 99


>d1loua_ d.58.14.1 (A:) Ribosomal protein S6 {Thermus thermophilus
          [TaxId: 274]}
          Length = 97

 Score =  102 bits (255), Expect = 1e-23
 Identities = 25/96 (26%), Positives = 48/96 (50%)

Query: 1  MKLYEHVFLLRQDISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKNRKAYY 60
          M+ YE   +L  ++   Q+       Q   +  G  V  V ELG+R +AY I K+ + Y+
Sbjct: 1  MRRYEVNIVLNPNLDQSQLALEKEIIQRAAENYGARVEKVEELGLRRLAYPIAKDPQGYF 60

Query: 61 VFMNIASPPAAIHEMKRKMRIDENVLRSLTLLVDSH 96
          ++  +  P   ++++ R++RI +NV R + +     
Sbjct: 61 LWYQVEMPEDRVNDLARELRIRDNVRRVMVVKSQEP 96


>d1vmba_ d.58.14.1 (A:) Ribosomal protein S6 {Thermotoga maritima
          [TaxId: 2336]}
          Length = 107

 Score = 98.7 bits (246), Expect = 2e-22
 Identities = 20/98 (20%), Positives = 48/98 (48%), Gaps = 1/98 (1%)

Query: 1  MKLYEHVFLLRQDISSQQIKDTIGQYQSLIQEN-GGEVRLVNELGMRTIAYRIRKNRKAY 59
           ++YE +F++  ++  ++ ++ + + + +I+E   G++  V  +GMR  AY I+K  +  
Sbjct: 2  ERIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKIDKVERMGMRKFAYEIKKFNEGD 61

Query: 60 YVFMNIASPPAAIHEMKRKMRIDENVLRSLTLLVDSHE 97
          Y  +        + E++   R+   ++R  T      E
Sbjct: 62 YTVIYFRCDGQNLQELENFYRVTPEIIRWQTFRRFDLE 99


>d2j5aa1 d.58.14.1 (A:3-108) Ribosomal protein S6 {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 106

 Score = 94.5 bits (235), Expect = 3e-21
 Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 1/98 (1%)

Query: 1   MKLYEHVFLLRQDISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKNRKAYY 60
           ++ YE VF ++  +S +++K    Q +  I++ GGE+    + GMR +AY I+K   A Y
Sbjct: 5   LRYYETVFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARY 64

Query: 61  VFMNI-ASPPAAIHEMKRKMRIDENVLRSLTLLVDSHE 97
             +      P   +E+  +++IDE+V+R L + +   E
Sbjct: 65  FLVQFKTENPQLPNELDFQLKIDEDVIRWLNIQIKESE 102


>d1wzaa1 b.71.1.1 (A:437-515) Bacterial alpha-Amylase
          {Halothermothrix orenii [TaxId: 31909]}
          Length = 79

 Score = 25.0 bits (54), Expect = 2.2
 Identities = 10/38 (26%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 35 GEVRLVNELGMRTIAYRIRKNRKAYYVFMNIASPPAAI 72
          G++ ++N  G+  +A+R   +++  YV+ N+ + P  I
Sbjct: 1  GKIEIING-GLNVVAFRRYNDKRDLYVYHNLVNRPVKI 37


>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside
          phosphotransferase {Enterococcus faecalis [TaxId:
          1351]}
          Length = 263

 Score = 25.0 bits (53), Expect = 2.6
 Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 16 SQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKNRKAYYVFMNIASPPAAIHEM 75
          S ++K  I +Y+ +    G     V         Y++    +  Y+ M  +      +++
Sbjct: 6  SPELKKLIEKYRCVKDTEGMSPAKV---------YKLVGENENLYLKMTDSRYKGTTYDV 56

Query: 76 KRKMRI 81
          +R+  +
Sbjct: 57 EREKDM 62


>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide
          ribonucleotide synthetase PurP {Pyrococcus furiosus
          [TaxId: 2261]}
          Length = 99

 Score = 23.8 bits (52), Expect = 5.7
 Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 5/51 (9%)

Query: 44 GMRTIAYRIRKNRKAYYVFMNIASPPAAIHEMKRKMRIDENVL----RSLT 90
          G  TIA+   K +  Y  +  +A         + ++  + N +     S  
Sbjct: 24 GFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELL-NLNAVVVPTGSFV 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.375 

Gapped
Lambda     K      H
   0.267   0.0746    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 463,020
Number of extensions: 19186
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 14
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.2 bits)