HHsearch alignment of GI: 254780330 and MMDB domain: 2vqe_R_
>2vqe_R (R:) 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus}
Probab=99.95 E-value=1.3e-28 Score=181.10 Aligned_cols=79 Identities=37% Similarity=0.526 Sum_probs=72.8
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 6667132277777888854350388511446889999962899848550331748999999999999999704658676
Q gi|254780330|r 4 VAPTPLLRRNVSHRRKSCPLSGKGAPRIDYKDIRLLNRFLSQRGKIVPSRISSVSHKKQRELAKAIKRARYLGLIAYVN 82 (83)
Q Consensus 4 ~~p~p~~~~~~~~~~k~c~~~~~~~~~iDYKn~~lL~~Fis~~GkI~prr~TG~~~k~Qr~i~~aIKrAR~~gLlPy~~ 82 (83)
..+.+...+....+++.|+||.++++.|||||+++|++|||++|+|+||++||+|++|||+|++|||+||+||||||+.
T Consensus 5 ~~~~~~~~~~~~~~~~~c~~~~~~~~~idykn~~lL~~Fis~~GkIlprr~TGl~~k~Qr~l~~aIkrAR~~gLlP~~~ 83 (88)
T 2vqe_R 5 NAKPKKEAQRRPSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSGKEQRILAKTIKRARILGLLPFTE 83 (88)
T ss_dssp -----------CCCSCCTTTSCCCEETTCTTCHHHHGGGBCSSSCBCCHHHHCCCHHHHHHHHHHHHHHHHTTSSCSCC
T ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 6464412320887776663333666866765889999876998858177458878999999999999999975453229