HHsearch results for GI: 254780330 and protein with PDBid: 2vqe_R

>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R 1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R* 1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U* 1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Probab=99.94  E-value=2.4e-27  Score=173.14  Aligned_cols=82  Identities=37%  Similarity=0.556  Sum_probs=70.8

Q ss_pred             CCCCCCCCHHHCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCHHHCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             98766671322777-77888854350388511446889999962899848550331748999999999999999704658
Q gi|254780330|r    1 MAEVAPTPLLRRNV-SHRRKSCPLSGKGAPRIDYKDIRLLNRFLSQRGKIVPSRISSVSHKKQRELAKAIKRARYLGLIA   79 (83)
Q Consensus         1 ms~~~p~p~~~~~~-~~~~k~c~~~~~~~~~iDYKn~~lL~~Fis~~GkI~prr~TG~~~k~Qr~i~~aIKrAR~~gLlP   79 (83)
                      ||+.+..|...... ..+++.|.++..+++.+||||+++|++||||+|+|+||++||+|+++||+|++|||+||+|||||
T Consensus         1 ms~k~~~~kk~~~rr~~~k~~~~~~~~~~~~iDyKdv~lL~~Fis~~GkI~prr~TGl~~k~Qr~l~~aIKrAR~~gLlp   80 (88)
T 2vqe_R            1 MSTKNAKPKKEAQRRPSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSGKEQRILAKTIKRARILGLLP   80 (88)
T ss_dssp             ---------------CCCSCCTTTSCCCEETTCTTCHHHHGGGBCSSSCBCCHHHHCCCHHHHHHHHHHHHHHHHTTSSC
T ss_pred             CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99876564510111887777663344667856755889999866998748287427879999999999999999975465


Q ss_pred             CCC
Q ss_conf             676
Q gi|254780330|r   80 YVN   82 (83)
Q Consensus        80 y~~   82 (83)
                      ||+
T Consensus        81 ~~~   83 (88)
T 2vqe_R           81 FTE   83 (88)
T ss_dssp             SCC
T ss_pred             CCH
T ss_conf             228